Browse Source

Frissítés "README.md"

Richárd Fiáth 3 years ago
parent
commit
d2462c610e
1 changed files with 1 additions and 1 deletions
  1. 1 1
      README.md

+ 1 - 1
README.md

@@ -11,7 +11,7 @@ Each recording and corresponding metadata, single unit properties and quality me
 The CSV file named "Animal_characteristics_and_targeted_cortical_areas" contains information about the weight and sex of animals, as well as about the cortical area and stereotaxic coordinates corresponding to each probe insertion. The "Recording_characteristics" CSV file lists several useful properties for each NWB file including the file size, the duration of the recording, the cortical location, the single unit yield, the average signal-to-noise ratio of single units, the degree of power line (50 Hz) noise contamination (given by the power spectral density value measured at 50 Hz, and also by the ratio of the power spectral density measured at 50 Hz to the power spectral density measured at 49 Hz), the RMS noise and RMS signal levels.
 
 ## NWB file structure
-Each NWB file contains several main groups which are similar to directories. The *acquisition* group contains the continuous wideband 128-channel data (‘wideband_multichannel_recording’) in a compressed form, as well as several parameters related to the raw data such as the measurement unit or the data conversion number. The *general* group contains metadata about the experiments and consists of several subgroups, related to the recording probe (‘general/devices’; ‘general/extracellular_ephys’) or the subjects of the experiments (‘general/subject’). Former subgroups carry information about the probe location (brain area and stereotaxic coordinates) and the relative positions and laminar location of recordings sites, while the latter contains metadata about the animal (e.g., sex, species, subject ID, or weight). Information about spike sorting and single units and corresponding data are available in the *units* group. For each unit, we included here the mean and standard deviation of their spike waveform on all channels, calculated both from the filtered (‘mean_waveform_all_channels_filt’; ’waveform_sd_all_channels_filt’) and the wideband data (‘mean_waveform_all_channels_raw’; ’ waveform_sd_all_channels_raw’). For an easier visualization of the multichannel spike waveform in two dimensions, we have also added an array which contains the mean spike waveform in the 32 x 4 shape of the electrode array (‘mean_waveform_all_channels_filt_32x4’; ’mean_waveform_all_channels_raw_32x4’). Furthermore, the spike waveform recorded on the channel with the largest spike (i.e., peak waveform channel) was saved separately (‘mean_waveform_peak_channel_filt’, ‘mean_waveform_peak_channel_raw’). Several single unit properties and cluster quality metrics, as well as the spike times and spike count of each unit were saved in the *units* group. Furthermore, to aid users in selecting and analyzing a subset of this dataset appropriate for their research goals, we also created an NWB file (‘allSingleUnits.nwb’) which contains all single units with all the properties listed above, along with the identifier of the recording (‘units/session_id’)  and the cortical area (‘units/cortical_area’) they originate from. The structure if NWB files can be explored using the [HDFView](https://www.hdfgroup.org/downloads/hdfview/) software.
+Each NWB file contains several main groups which are similar to directories. The *acquisition* group contains the continuous wideband 128-channel data (‘wideband_multichannel_recording’) in a compressed form, as well as several parameters related to the raw data such as the measurement unit or the data conversion number. The *general* group contains metadata about the experiments and consists of several subgroups, related to the recording probe (‘general/devices’; ‘general/extracellular_ephys’) or the subjects of the experiments (‘general/subject’). Former subgroups carry information about the probe location (brain area and stereotaxic coordinates) and the relative positions and laminar location of recordings sites, while the latter contains metadata about the animal (e.g., sex, species, subject ID, or weight). Information about spike sorting and single units and corresponding data are available in the *units* group. For each unit, we included here the mean and standard deviation of their spike waveform on all channels, calculated both from the filtered (‘mean_waveform_all_channels_filt’; ’waveform_sd_all_channels_filt’) and the wideband data (‘mean_waveform_all_channels_raw’; ’ waveform_sd_all_channels_raw’). For an easier visualization of the multichannel spike waveform in two dimensions, we have also added an array which contains the mean spike waveform in the 32 x 4 shape of the electrode array (‘mean_waveform_all_channels_filt_32x4’; ’mean_waveform_all_channels_raw_32x4’). Furthermore, the spike waveform recorded on the channel with the largest spike (i.e., peak waveform channel) was saved separately (‘mean_waveform_peak_channel_filt’, ‘mean_waveform_peak_channel_raw’). Several single unit properties and cluster quality metrics, as well as the spike times and spike count of each unit were saved in the *units* group. Furthermore, to aid users in selecting and analyzing a subset of this dataset appropriate for their research goals, we also created an NWB file (‘allSingleUnits.nwb’) which contains all single units with all the properties listed above, along with the identifier of the recording (‘units/session_id’)  and the cortical area (‘units/cortical_area’) they originate from. The structure of NWB files can be explored using the [HDFView](https://www.hdfgroup.org/downloads/hdfview/) software.
 
 ## Downloading the dataset