datacite.yml 5.1 KB

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  1. # Metadata for DOI registration according to DataCite Metadata Schema 4.1.
  2. # For detailed schema description see https://doi.org/10.5438/0014
  3. ## Required fields
  4. # The main researchers involved. Include digital identifier (e.g., ORCID)
  5. # if possible, including the prefix to indicate its type.
  6. authors:
  7. -
  8. firstname: "Fikret Emre"
  9. lastname: "Kapucu"
  10. affiliation: "Neuro Group, Faculty of Medicine and Health Technology, Tampere University"
  11. id: "ORCID:0000-0002-4557-6885"
  12. -
  13. firstname: "Andrey"
  14. lastname: "Vinogradov"
  15. affiliation: "Neuro Group, Faculty of Medicine and Health Technology, Tampere University"
  16. id: "ORCID:0000-0003-1894-773X"
  17. -
  18. firstname: "Tanja"
  19. lastname: "Hyvärinen"
  20. affiliation: "Neuro Group, Faculty of Medicine and Health Technology, Tampere University"
  21. id: "ORCID:0000-0002-8723-8817"
  22. -
  23. firstname: "Laura"
  24. lastname: "Ylä-Outinen"
  25. affiliation: "Neuro Group, Faculty of Medicine and Health Technology, Tampere University"
  26. id: "ORCID:0000-0001-7817-9395"
  27. -
  28. firstname: "Susanna"
  29. lastname: "Narkilahti"
  30. affiliation: "Neuro Group, Faculty of Medicine and Health Technology, Tampere University"
  31. id: "ORCID:0000-0002-7602-4418"
  32. # A title to describe the published resource.
  33. title: "Comparative microelectrode array dataset of the functional development of hPSC-derived and rat neuronal networks "
  34. # Additional information about the resource, e.g., a brief abstract.
  35. description: |
  36. We provide a dataset of microelectrode array recordings (MEA) from human pluripotent stem cell (hPSC)-derived and
  37. rat embryonic cortical neurons during in vitro maturation and pharmacological treatment at their mature stage.
  38. Together with the recorded raw MEA data, we share the analysis code that produces the key scientific findings
  39. published previously with this dataset (Hyvärinen et al., 2019), including PCA analysis to reveal the distinction
  40. between rat and human cell activity features. The data enables evaluation and comparison of hPSC-derived and rat
  41. cortical cultures in terms of functional development and response to pharmacological treatment. The 12500 Hz
  42. sampled data is recorded with Axion 12-well plates (for developmental tracking) and 48-well plates (for
  43. pharmacological experiments). Raw data constitute time series of extracellularly recorded voltage values in Volts.
  44. The duration of the recordings varies from 10 to 30 minutes depending on the experimental set-up. Each raw MEA data
  45. file contains organised meta-data. This dataset is valuable for experimental and computational neuroscientists and
  46. any signal analyst with interest for neuronal signalling. The accurate detailed description of data is delivered in
  47. the corresponding publication (Kapucu et al., submitted).
  48. # Lit of keywords the resource should be associated with.
  49. # Give as many keywords as possible, to make the resource findable.
  50. keywords:
  51. - Neuroscience
  52. - Electrophysiology
  53. - Microelectrode array
  54. - MEA
  55. - Extracellular recordings
  56. - Action potential
  57. - Neuronal connectivity
  58. - Spike analysis
  59. - Burst analysis
  60. - Stem cell-derived neurons
  61. - Neuronal network development
  62. # License information for this resource. Please provide the license name and/or a link to the license.
  63. # Please add also a corresponding LICENSE file to the repository.
  64. license:
  65. name: "Creative Commons Attribution-NonCommercial 4.0 International License"
  66. url: "https://creativecommons.org/licenses/by-nc/4.0/"
  67. ## Optional Fields
  68. # Funding information for this resource.
  69. # Separate funder name and grant number by comma.
  70. funding:
  71. - "Academy of Finland, 332693 (Fikret Emre Kapucu), 286990/326436 (Laura Ylä-Outinen), 312414 and 311017 (Susanna Narkilahti)"
  72. - "Orion Research Foundation, grant for postdoctoral research 2019 (Fikret Emre Kapucu), grant for doctoral dissertation work 2020 (Andrey Vinogradov)"
  73. # Related publications. reftype might be: IsSupplementTo, IsDescribedBy, IsReferencedBy.
  74. # Please provide digital identifier (e.g., DOI) if possible.
  75. # Add a prefix to the ID, separated by a colon, to indicate the source.
  76. # Supported sources are: DOI, arXiv, PMID
  77. # In the citation field, please provide the full reference, including title, authors, journal etc.
  78. references:
  79. -
  80. id: "doi:10.xxx/zzzz"
  81. reftype: "IsDescribedBy"
  82. citation: "Kapucu, F.E., Vinogradov A., Hyvärinen T., Ylä-Outinen L., Narkilahti S. (2021, submitted). Comparative microelectrode array dataset of functional development of human PSC-derived and rat neuronal networks"
  83. -
  84. id: "doi:10.1038/s41598-019-53647-8"
  85. reftype: "IsSupplementTo"
  86. citation: "Hyvärinen, T., Hyysalo, A., Kapucu, F.E., Aarnos, L., Vinogradov, A., Eglen, J.E., Ylä-Outinen, L., Narkilahti, S. (2019). Functional characterization of human pluripotent stem cell-derived cortical networks differentiated on laminin-521 substrate: comparison to rat cortical cultures. Scientific Reports volume 9, 17125."
  87. # Resource type. Default is Dataset, other possible values are Software, DataPaper, Image, Text.
  88. resourcetype: Dataset
  89. # Do not edit or remove the following line
  90. templateversion: 1.2