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@@ -11,7 +11,7 @@ The repository also includes an automatic segmentation/spatial normalization pip
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Program for automatic segmentation to a DAPI-stained coronal mouse brain slices.
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**Getting started**
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- - [Setup your environment](#how-to-setup-the-environment) with the correct python version, python packages, and Advanced Normalization Tools (ANTs).
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+ - [Setup your environment](#setting-up-the-environment) with the correct python version, python packages, and Advanced Normalization Tools (ANTs).
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- Download the and unzip the [example folder](./Example_folder.zip).
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- In a terminal window, navigate into the unzipped example folder.
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- Run the runner_example.sh with the command ```bash runner_example.sh```
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@@ -19,7 +19,7 @@ Program for automatic segmentation to a DAPI-stained coronal mouse brain slices.
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For detailed parameter and output description go to the [automatic segmentation program](./automatic_segmentation_program).
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-## How to setup the environment
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+## Setting up the environment
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Below is a quick guide to setup the enviroment on a UNIX (Mac and Linux) system
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* The program requires Python 3.7+. You can get the newest version of python by installing Anaconda (https://www.anaconda.com). To check your version of python, type ```python --version```
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