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@@ -1,12 +1,14 @@
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-# Automatic slice segmentation
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+# Description
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+This repository contains the full data set for constructing the DAPI template, the full DAPI template creation pipeline and the automatic slice segmentation.
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-Program for automatically registering a segmentation to a DAPI-stained slice.
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+# Automatic slice segmentation
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+Program for automatic segmentation to a DAPI-stained coronal mouse brain slices.
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## Dependencies
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* Python 3.6
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* Ants (https://github.com/ANTsX/ANTs)
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-##Prerequisites
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+## Prerequisites
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* A high-resolution, DAPI modality TIFF image of a brain slice. Can have multiple channels.
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* A template file (.nii or .nii.gz)
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* A segmentation of the template file (.nii or .nii.gz)
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