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README.md

Data repository for Hasegawa & Huang et al.

This data can be used to generate main and supplementary figures of Hasegawa, Huang, Paricio-Montesinos & Gründemann (original preprint https://doi.org/10.1101/2023.08.23.554119).

Data matrices were generated in MATLAB2020a (MathWorks) and safed as .mat files.

Data structure:
'DataAll.(Aud1)': Initial auditory-go group
'DataAll.(Vis1)': Initial visual-go group
E.g. DataAll.('Aud1')(n).BHV.Naive{m}.FieldName (n: n-th mouse; m: m-th session)

FieldName
StimStart: Stimulus start time (s)
ICF: raw calcium trace (sample,cell)
LickPulse: Lick time (s)
Trial_Freq: Auditory stimulus frequency
Trial_Grat: Visual stimulus angle
RotaryEncPulse: Rotary encoder pulse (no direction)

datacite.yml
Title Data for: Network state changes in sensory thalamus represent learned outcomes
Authors Hasegawa,Masashi;German Center for Neurodegenerative Diseases (DZNE), Bonn, Germany and University of Basel, Department of Biomedicine, Basel, Switzerland
Huang,Ziyan;German Center for Neurodegenerative Diseases (DZNE), Bonn, Germany
Paricio-Montesinos,Ricardo;German Center for Neurodegenerative Diseases (DZNE), Bonn, Germany
Gründemann,Jan;German Center for Neurodegenerative Diseases (DZNE), Bonn, Germany and University of Basel, Department of Biomedicine, Basel, Switzerland
Description Data repository for generation of figures of Hasegawa M, Huang Z, Paricio-Montesinos R, Gründemann J (2024). In vivo calcium imaging data from mice.
License Creative Commons Attribution 4.0 International Public License (https://creativecommons.org/licenses/by/4.0/legalcode.en)
References Hasegawa M, Huang Z, Paricio-Montesinos R, Gründemann J (2024) Network state changes in sensory thalamus represent learned outcomes. tba. [doi:tba] (IsSupplementTo)
Hasegawa M, Huang Z, Paricio-Montesinos R, Gründemann J (2024) Code for: Network state changes in sensory thalamus represent learned outcomes. G-Node. https://doi.org/10.12751/g-node.1rfzbn [doi:10.12751/g-node.1rfzbn] (IsReferencedBy)
Funding DFG; SFB1089, SPP2411, Walter Benjamin Programme 528405672
EU; ERC Starting Grant 803870
Swiss National Science Foundation; PP00P3_170672
Schweizerische Hirnliga; Forschungspreis
The Forschungsfonds Nachwuchsforschende of the University of Basel
The Department of Biomedicine at the University of Basel
Deutsches Zentrum für Neurodegenerative Erkrankungen (DZNE)
DZNE Innovative Minds Program
Keywords Neuroscience
Thalamus
Imaging
Resource Type Dataset