2023_Blaschke_Stroke_tDCS_rsfMRI/scripts/toolbox/spm12/spm_dicom_essentials.m

function hdr1 = spm_dicom_essentials(hdr0)
% Remove unused fields from DICOM header
% FORMAT hdr1 = spm_dicom_essentials(hdr0)
% hdr0 - original DICOM header
% hdr1 - Stripped down DICOM header
%
% With lots of DICOM files, the size of all the headers can become too
% big for all the fields to be saved.  The idea here is to strip down
% the headers to their essentials.
%__________________________________________________________________________
% Copyright (C) 2008-2018 Wellcome Trust Centre for Neuroimaging

% John Ashburner
% $Id: spm_dicom_essentials.m 7416 2018-09-11 13:55:13Z john $


if isempty(hdr0), hdr1 = hdr0; return; end

used_fields = {...
    'AcquisitionDate',...
    'AcquisitionNumber',...
    'AcquisitionTime',...
    'BitsAllocated',...
    'BitsStored',...
    'CSAImageHeaderInfo',...
    'Columns',...
    'EchoNumbers',...
    'EchoTime',...
    'Filename',...
    'FlipAngle',...
    'HighBit',...
    'ImageOrientationPatient',...
    'ImagePositionPatient',...
    'ImageType',...
    'InstanceNumber',...
    'MagneticFieldStrength',...
    'Manufacturer',...
    'Modality',...
    'MRAcquisitionType',...
    'NumberOfFrames',...
    'PatientID',...
    'PixelRepresentation',...
    'PixelSpacing',...
    'Private_0029_1110',...
    'Private_0029_1210',...
    'ProtocolName',...
    'RepetitionTime',...
    'RescaleIntercept',...
    'RescaleSlope',...
    'Rows',...
    'SOPClassUID',...
    'SamplesPerPixel',...
    'ScanningSequence',...
    'SequenceName',...
    'SeriesDescription',...
    'SeriesInstanceUID',...
    'SeriesNumber',...
    'SizeOfPixelData'...
    'SliceNormalVector',...
    'SliceThickness',...
    'SpacingBetweenSlices',...
    'StartOfPixelData',...
    'StudyDate',...
    'StudyTime',...
    'TransferSyntaxUID',...
    'VROfPixelData',...
    'ScanOptions',...
    'GE_ImageType',...
    'MRScaleSlope',...
    'MRScaleIntercept',...
    ...
    'PerFrameFunctionalGroupsSequence',...
    'SharedFunctionalGroupsSequence',...
    'DimensionIndexSequence',...
    };

% Should probably save some memory by stripping out unused fields
% from PerFrameFunctionalGroupsSequence and PerFrameFunctionalGroupsSequence.
% This is not yet a priority though.

fnames = fieldnames(hdr0);
for i=1:numel(used_fields)
    if ismember(used_fields{i},fnames)
       hdr1.(used_fields{i}) = hdr0.(used_fields{i});
    end
end

Private_spectroscopy_fields = {...
    'Columns',...
    'Rows',...
    'ImageOrientationPatient',...
    'ImagePositionPatient',...
    'SliceThickness',...
    'PixelSpacing',...
    'VoiPhaseFoV',...
    'VoiReadoutFoV',...
    'VoiThickness'};
if isfield(hdr1,'Private_0029_1110')
    hdr1.Private_0029_1110 = ...
        getfields(hdr1.Private_0029_1110,...
                       Private_spectroscopy_fields);
end
if isfield(hdr1,'Private_0029_1210')
    hdr1.Private_0029_1210 = ...
        getfields(hdr1.Private_0029_1210,...
                       Private_spectroscopy_fields);
end
 
if isfield(hdr1,'CSAImageHeaderInfo')
    CSAImageHeaderInfo_fields = {...
        'SliceNormalVector',...
        'NumberOfImagesInMosaic',...
        'AcquisitionMatrixText',...
        'ICE_Dims'};
    hdr1.CSAImageHeaderInfo = ...
        getfields(hdr1.CSAImageHeaderInfo,...
                       CSAImageHeaderInfo_fields);
end

if isfield(hdr1,'CSASeriesHeaderInfo')
    CSASeriesHeaderInfo_fields = {};
    hdr1.CSASeriesHeaderInfo = ...
        getfields(hdr1.CSASeriesHeaderInfo,...
                       CSASeriesHeaderInfo_fields); 
end


function str1 = getfields(str0,names)
str1 = [];
for i=1:numel(names)
    for j=1:numel(str0)
        if strcmp(str0(j).name,names{i})
            str1 = [str1,str0(j)];
        end
    end
end