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@@ -18,13 +18,13 @@ For each subject, there are folders called uXXX# where u stands for microwire, X
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* Entorhinal Cortex = "u" + ("ECR"|"ECL");
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* Pararhinal cortex = "uPCL" (Only located in Patient1, not used)
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-Inside each folder, there are spike sorting results for both negative and positive spikes saved in Combinato format (for more details see their GitHub). Additionally, spike waveforms and spike times were saved in a mat file called py_spikes_posneg_uXXX#.mat for each microwire with detected waveforms. These files are required for the corresponding code.
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+Inside each folder, there are spike sorting results for both negative and positive spikes saved in Combinato format (for more details see their GitHub). Additionally, spike waveforms and spike times were saved in a mat file called *py_spikes_posneg_uXXX#.mat* for each microwire with detected waveforms. These files are required for the corresponding code.
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### **Behavior**
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The file 'all_images.txt' contains the image identities used in all sessions. The 229 images from the IAPS dataset are owned by the [Center for the Study of Emotion and Attention](https://csea.phhp.ufl.edu/) and can only be obtained from them directly, and therefore, we only share the image identies. The additional 11 (neutral) images used in our study are provided in the 'images' folder. Additional files to understand the trial types are located inside the behavioral folder _Enc_ for encoding and _Rec_ for recogntion e.g., emotional_memory_neuronal_data\rec\Patient1\Rec and described below:
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-* *ft_trial_PatientID.mat* contains the trial times in MATLAB (FieldTrip) format.
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-* *log.res* contains 3 columns corresponding to response (Remember, Know, Forgot or No Response), Reaction time (in milliseconds), and Sample number.
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-* *IAPS_rec.mat* file contains indicies (to index all_images.txt) for the image identity of each trial.
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-* *_onsets.mat* files contain the trial number for each trial types (e.g., eR: emotional remembered, nMiss: neutral missed, etc.).
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+* *ft_trial_PatientID.mat* contains the FieldTrip header from the NeuraLynx files, FieldTrip event structure, FieldTrip trial structure (trl in samples and trl_sec in seconds). This is used to synchronize behavior and electrophysiogical data.
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+* *log.res* contains 3 columns corresponding to response (Remember, Know, Forgot or No Response), Reaction time (in milliseconds), and sample number.
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+* *IAPS_enc.mat* and *IAPS_rec.mat* file contains indicies (to index all_images.txt) for the image identity of each trial.
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+* *enc_onsets.mat* and *rec_onsets.mat* are MATLAB structs with fields containing the trial numbers for all trial types (e.g., eR: emotional remembered, nMiss: neutral missed, etc.). This is used to decode both the emotional and memory types.
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