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- '''
- NWB parameters common across all animals and recording sessions
- Parameters that may change:
- dataset
- '''
- import pathlib
- import os
- import re
- global rawDataFolder, derivedDataFolder, derivedDataFolderNWB
- projectName = 'Brainwide Infraslow Activity Dynamics'
- experimenter = 'Martynas Dervinis'
- institution = 'University of Leicester'
- publications = []
- lab = 'Michael Okun lab'
- dataset = 'neuronexus'
- videoFrameRate = 25.0 # Hz
- # Find the repository root folder
- rootFolderName = 'convert2nwbPyNnx'
- rootFolderCandidate = pathlib.Path(__file__).parent.resolve()
- endInd = re.search(rootFolderName, str(rootFolderCandidate)).end()
- rootFolder = str(rootFolderCandidate)[:endInd]
- # Assign data folders
- if 'neuronexus' in dataset:
- rawDataFolder = os.path.join(rootFolder, 'nnx_raw_derived_data'); # Raw and certain derived Neuronexus data for all animals
- derivedDataFolder = os.path.join(rootFolder, 'nnx_derived_data'); # Neuroscience Gateway analysis scripts, functions, and downloaded processed Neuronexus data for all animals
- derivedDataFolderNWB = os.path.join(rootFolder, 'nnx_derived_data_nwb'); # Derived Neuronexus data for all animals placed in NWB format
- elif 'neuropixels' in dataset:
- rawDataFolder = os.path.join(rootFolder, 'npx_raw_derived_data'); # Raw and certain derived Neuropixels data for all animals
- derivedDataFolder = os.path.join(rootFolder, 'npx_derived_data'); # Neuroscience Gateway analysis scripts, functions, and downloaded processed Neuropixels data for all animals
- derivedDataFolderNWB = os.path.join(rootFolder, 'npx_derived_data_nwb'); # Derived Neuropixels data for all animals placed in NWB format
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