gin upload from sirota2

Modified files: 10
Deleted files: 306

Code/CliffAnalysis/notebooks/.ipynb_checkpoints/VRCliff_SessionStats-checkpoint.ipynb

@@ -190,6 +190,46 @@
     "df.head(3)"
    ]
   },
+  {
+   "cell_type": "code",
+   "execution_count": 188,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "count     7.000000\n",
+       "mean     48.285714\n",
+       "std       8.459990\n",
+       "min      36.000000\n",
+       "25%      41.500000\n",
+       "50%      53.000000\n",
+       "75%      54.000000\n",
+       "max      58.000000\n",
+       "Name: CliffSide, dtype: float64"
+      ]
+     },
+     "execution_count": 188,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "n_sessions = df.groupby('Rat').CliffSide.count()\n",
+    "n_sessions[n_sessions > 10].describe()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {
+    "collapsed": true
+   },
+   "outputs": [],
+   "source": [
+    "n_sessions[n_sessions > 10].describe"
+   ]
+  },
   {
    "cell_type": "code",
    "execution_count": 5,
@@ -2213,6 +2253,26 @@
     "    g.add_legend()"
    ]
   },
+  {
+   "cell_type": "code",
+   "execution_count": 192,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "(43.619805161512005, 15.664389987590203)"
+      ]
+     },
+     "execution_count": 192,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "dfj.Time.mean(), dfj.Time.std()"
+   ]
+  },
   {
    "cell_type": "code",
    "execution_count": 89,
@@ -2568,6 +2628,54 @@
     "dfj.head()"
    ]
   },
+  {
+   "cell_type": "code",
+   "execution_count": 194,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "CliffType\n",
+       "Real      45.608110\n",
+       "Static    40.885753\n",
+       "VR        44.533757\n",
+       "Name: Time, dtype: float64"
+      ]
+     },
+     "execution_count": 194,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "dfj.groupby('CliffType').Time.mean()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 195,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "CliffType\n",
+       "Real      17.804234\n",
+       "Static    13.648970\n",
+       "VR        15.211098\n",
+       "Name: Time, dtype: float64"
+      ]
+     },
+     "execution_count": 195,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "dfj.groupby('CliffType').Time.std()"
+   ]
+  },
   {
    "cell_type": "code",
    "execution_count": 143,
@@ -7674,7 +7782,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 149,
+   "execution_count": 165,
    "metadata": {},
    "outputs": [
     {
@@ -7701,6 +7809,7 @@
        "      <th>CliffJumps</th>\n",
        "      <th>SafeJumps</th>\n",
        "      <th>PercSafe</th>\n",
+       "      <th>N</th>\n",
        "    </tr>\n",
        "  </thead>\n",
        "  <tbody>\n",
@@ -7709,31 +7818,34 @@
        "      <td>38</td>\n",
        "      <td>75</td>\n",
        "      <td>0.663717</td>\n",
+       "      <td>113</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>Static</th>\n",
        "      <td>56</td>\n",
        "      <td>54</td>\n",
        "      <td>0.490909</td>\n",
+       "      <td>110</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>VR</th>\n",
        "      <td>44</td>\n",
        "      <td>70</td>\n",
        "      <td>0.614035</td>\n",
+       "      <td>114</td>\n",
        "    </tr>\n",
        "  </tbody>\n",
        "</table>\n",
        "</div>"
       ],
       "text/plain": [
-       "        CliffJumps  SafeJumps  PercSafe\n",
-       "Real            38         75  0.663717\n",
-       "Static          56         54  0.490909\n",
-       "VR              44         70  0.614035"
+       "        CliffJumps  SafeJumps  PercSafe    N\n",
+       "Real            38         75  0.663717  113\n",
+       "Static          56         54  0.490909  110\n",
+       "VR              44         70  0.614035  114"
       ]
      },
-     "execution_count": 149,
+     "execution_count": 165,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -7743,7 +7855,7 @@
     "                  columns=['CliffJumps', 'SafeJumps'], \n",
     "                  index=['Real', 'Static', 'VR'])\n",
     "dd['PercSafe'] = dd['SafeJumps'] / dd.sum(axis=1)\n",
-    "\n",
+    "dd['N'] = dd['CliffJumps'] + dd['SafeJumps']\n",
     "dd"
    ]
   },
@@ -7915,6 +8027,38 @@
     "data.loc['VR']"
    ]
   },
+  {
+   "cell_type": "code",
+   "execution_count": 169,
+   "metadata": {
+    "collapsed": true
+   },
+   "outputs": [],
+   "source": [
+    "from seaborn.algorithms import bootstrap"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 174,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "9.0906258860432718"
+      ]
+     },
+     "execution_count": 174,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "bootstrap(data.loc['VR']['', n_boot=1000)\n",
+    "#data.loc['VR']"
+   ]
+  },
   {
    "cell_type": "markdown",
    "metadata": {},

Code/CliffAnalysis/notebooks/VRCliff_SessionStats.ipynb

@@ -190,6 +190,35 @@
     "df.head(3)"
    ]
   },
+  {
+   "cell_type": "code",
+   "execution_count": 188,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "count     7.000000\n",
+       "mean     48.285714\n",
+       "std       8.459990\n",
+       "min      36.000000\n",
+       "25%      41.500000\n",
+       "50%      53.000000\n",
+       "75%      54.000000\n",
+       "max      58.000000\n",
+       "Name: CliffSide, dtype: float64"
+      ]
+     },
+     "execution_count": 188,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "n_sessions = df.groupby('Rat').CliffSide.count()\n",
+    "n_sessions[n_sessions > 10].describe()"
+   ]
+  },
   {
    "cell_type": "code",
    "execution_count": 5,
@@ -2213,6 +2242,26 @@
     "    g.add_legend()"
    ]
   },
+  {
+   "cell_type": "code",
+   "execution_count": 192,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "(43.619805161512005, 15.664389987590203)"
+      ]
+     },
+     "execution_count": 192,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "dfj.Time.mean(), dfj.Time.std()"
+   ]
+  },
   {
    "cell_type": "code",
    "execution_count": 89,
@@ -2568,6 +2617,54 @@
     "dfj.head()"
    ]
   },
+  {
+   "cell_type": "code",
+   "execution_count": 194,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "CliffType\n",
+       "Real      45.608110\n",
+       "Static    40.885753\n",
+       "VR        44.533757\n",
+       "Name: Time, dtype: float64"
+      ]
+     },
+     "execution_count": 194,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "dfj.groupby('CliffType').Time.mean()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 195,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "CliffType\n",
+       "Real      17.804234\n",
+       "Static    13.648970\n",
+       "VR        15.211098\n",
+       "Name: Time, dtype: float64"
+      ]
+     },
+     "execution_count": 195,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "dfj.groupby('CliffType').Time.std()"
+   ]
+  },
   {
    "cell_type": "code",
    "execution_count": 143,

Code/WallAnalysis/notebooks/Untitled.ipynb

@@ -1,6 +1,35 @@
 {
- "cells": [],
- "metadata": {},
+ "cells": [
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {
+    "collapsed": true
+   },
+   "outputs": [],
+   "source": []
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "Matlab",
+   "language": "matlab",
+   "name": "matlab"
+  },
+  "language_info": {
+   "codemirror_mode": "octave",
+   "file_extension": ".m",
+   "help_links": [
+    {
+     "text": "MetaKernel Magics",
+     "url": "https://github.com/calysto/metakernel/blob/master/metakernel/magics/README.md"
+    }
+   ],
+   "mimetype": "text/x-matlab",
+   "name": "matlab",
+   "version": "0.14.3"
+  }
+ },
  "nbformat": 4,
  "nbformat_minor": 2
 }

Data/motion_tracking/processed/VRAcuityExp_2017-07-13_13-59-52_VR-4B_EDU/VRAcuityExp_2017-07-13_13-59-52_VR-4B_EDU-Camera 11136.mp4

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Data/motion_tracking/processed/VRAcuityExp_2017-07-13_13-59-52_VR-4B_EDU/VRAcuityExp_2017-07-13_13-59-52_VR-4B_EDU.h5

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