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Cabang: master
Ranting Tag
dt-evolv
daniele arosio 7a07a64a8a git-annex in sterzing 2 bulan lalu
analyses 7a07a64a8a git-annex in sterzing 2 bulan lalu
data 79dcf54258 git-annex in sterzing 3 bulan lalu
docs 38428a864d refactor: Establish lint 3 bulan lalu
src 7a07a64a8a git-annex in sterzing 2 bulan lalu
tests 38428a864d refactor: Establish lint 3 bulan lalu
.envrc 5a205b2c02 feat: Adopt cookiecutter with hatch 4 bulan lalu
.gitignore 5a205b2c02 feat: Adopt cookiecutter with hatch 4 bulan lalu
.pre-commit-config.yaml 38428a864d refactor: Establish lint 3 bulan lalu
.python-version 93f2171941 refactor: Move corr coef out of ipynb 3 bulan lalu
CHANGELOG.md 5a205b2c02 feat: Adopt cookiecutter with hatch 4 bulan lalu
LICENSE 93313fb416 git-annex in sterzing 2 bulan lalu
Readme.org 5a205b2c02 feat: Adopt cookiecutter with hatch 4 bulan lalu
an.org 5a205b2c02 feat: Adopt cookiecutter with hatch 4 bulan lalu
cz_customize_info.txt 5a205b2c02 feat: Adopt cookiecutter with hatch 4 bulan lalu
datacite.yml 02f6c8669c git-annex in sterzing 2 bulan lalu
pyproject.toml 2c7a471ca3 git-annex in whisker 2 bulan lalu

Readme.org

  • Version: "0.0.1"

    To download data 

rclone --drive-shared-with-me sync --copy-links --progress --exclude *.lifext gdpa:iClima\ 1Photon data/

Initial project setup

  • Create a new (empty) repo https://gin.g-node.org/repo/create

  • Run `git init`

  • Run `git add .`

  • Run `git remote add origin git@gin.g-node.org:/darosio/dt-evolv.git`

  • Run `git commit -m "init"`

  • Run `git push –set-upstream origin main`

  • Run `git annex init $HTNAME`

  • Run `git config annex.sshcaching true`

  • Edit .gitignore

  • Run `git annex add data/`

  • Run `git annex sync`

  • Alternatively use `echo "layout pyenv" or "layout python" > .envrc`

  • Run `direnv allow`

  • Run `hatch env create`

  • Run `hatch run lint`

  • Run `hatch run init`

  • Double check .pre-commit-config.yaml do not push id: commitizen-branch

Use

`git annex sync` instead of pushing after committing notable changes.

CLI installation

To enable auto completion for the `cli` command, follow these steps:

  1. Generate the completion script by running the following command: 

_CLINAME_COMPLETE=bash_source cliname > ~/.local/bin/cliname-complete.bash

  1. Source the generated completion script to enable auto completion: 

source ~/.local/bin/cliname-complete.bash
datacite.yml
Title CRISPR-λ mutagenesis of SARS-CoV-2 Spike-PP restore fusogenicity
Authors Arosio,Daniele;Consiglio Nazionale delle Ricerche;ORCID:0000-0003-2872-6906
Description Quantification of syncytia in High-Content Screening (HCS) images.
License BSD-3-Clause (https://opensource.org/license/BSD-3-Clause)
References
Funding CARITRO, 2018.256.
Keywords CRISPR-λ
In vivo mutagenesis
High Content Analysis
Resource Type DataPaper