danionella/Veith_et_al_2024: This repository contains data related to Veith, Chaigne et al. 2024

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jveith 01d68fd564 Update 'microCT/README.md'		5 months ago
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Danionella_cerebrum_PMA_16bit_binned_1p297_oriented_front_1965x1926x3328.raw	5dfd7e3345 git-annex in jveith@Jlabs-MacBook-Pro.local	7 months ago
Danionella_cerebrum_PMA_16bit_binned_1p297_oriented_front_1965x1926x3328_cropped_1224x1224x1645_meshgrid.blend	5b1ed45aa3 git-annex in jveith@Jlabs-MacBook-Pro.local	7 months ago
Danionella_cerebrum_PMA_16bit_binned_1p297_oriented_front_1965x1926x3328_cropped_1224x1224x1645_segmentation.ORSSession	3f3c840439 git-annex in jveith@Jlabs-MacBook-Pro.local	7 months ago
README.md	01d68fd564 Update 'microCT/README.md'	5 months ago

Micro CT data

PMA (phosphomolybdic acid)-stained, adult, male Danionella cerebrum.

See https://danionella.github.io/veith_et_al_2024/ for online viewer.

See http://n2t.net/ark:/87602/m4/623999 for MorphoSource entry.

Raw data

Danionella_cerebrum_PMA_16bit_binned_1p297_oriented_front_1965x1926x3328.raw
When opening file in ImageJ Fiji, choose 16-bit Unsigned and Little-endian byte order. Opening as virtual stack is recommended. The voxel size is 1.29702 µm.

Segmentation (DragonFly)

Danionella_cerebrum_PMA_16bit_binned_1p297_oriented_front_1965x1926x3328_cropped_1224x1224x1645_segmentation.ORSSession
Dragonfly (https://www.theobjects.com/dragonfly) project file, which contains raw data cropped around the inner ear (1224x1224x1645, anchor at 369,246,412), handlabelled planes, interpolated binary ROIs (interpolated by biomedisa, https://biomedisa.info/), and meshgrids derived from these binary ROIs.

Meshgrids (Blender)

Danionella_cerebrum_PMA_16bit_binned_1p297_oriented_front_1965x1926x3328_cropped_1224x1224x1645_meshgrid.blend
This Blender project file contains downsampled meshgrids of segmented inner ear structures and an animation.

datacite.yml
Title	The mechanism for directional hearing in fish
Authors	Veith,Johannes;Einstein Center for Neurosciences, Charité – Universitätsmedizin Berlin, Germany - Institute for Biology, Humboldt University, Berlin, Germany Chaigne,Thomas;Aix Marseille University, CNRS, Centrale Marseille, Institut Fresnel, Marseille, France - Einstein Center for Neurosciences, Charité – Universitätsmedizin Berlin, Germany Svanidze,Ana;Einstein Center for Neurosciences, Charité – Universitätsmedizin Berlin, Germany Dressler,Lena;Einstein Center for Neurosciences, Charité – Universitätsmedizin Berlin, Germany Hoffmann,Maximilian;Einstein Center for Neurosciences, Charité – Universitätsmedizin Berlin, Germany Gerhardt,Ben;Einstein Center for Neurosciences, Charité – Universitätsmedizin Berlin, Germany Judkewitz,Benjamin;Einstein Center for Neurosciences, Charité – Universitätsmedizin Berlin, Germany
Description	We provide trajectory data of directional acoustically evoked startles in adult Danionella cerebrum, Micro CT raw data and segmentation of the Danionella cerebrum hearing apparatus, and laser scanning confocal reflectance vibrometry data of inner ear structures.
License	Creative Commons CC0 1.0 Public Domain Dedication (https://creativecommons.org/publicdomain/zero/1.0/)
References	The mechanism for directional hearing in fish [doi:10.xxx/zzzz] (IsSupplementTo) GitHub repository: The mechanism for directional hearing in fish [url:https://github.com/danionella/veith_et_al_2024] (IsReferencedBy)
Funding
Keywords	Neuroscience Danionella cerebrum Directional Hearing Startle Behavior Inner Ear Anatomy Schuijf Model Neuroethology Particle Motion Vibrometry Fish Hearing
Resource Type	Dataset