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Danionella_cerebrum_PMA_16bit_binned_1p297_oriented_front_1965x1926x3328.raw 5dfd7e3345 git-annex in jveith@Jlabs-MacBook-Pro.local 6 months ago
Danionella_cerebrum_PMA_16bit_binned_1p297_oriented_front_1965x1926x3328_cropped_1224x1224x1645_meshgrid.blend 5b1ed45aa3 git-annex in jveith@Jlabs-MacBook-Pro.local 7 months ago
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README.md 01d68fd564 Update 'microCT/README.md' 4 months ago

README.md

Micro CT data

PMA (phosphomolybdic acid)-stained, adult, male Danionella cerebrum.

See https://danionella.github.io/veith_et_al_2024/ for online viewer.
See http://n2t.net/ark:/87602/m4/623999 for MorphoSource entry.
Raw data

Danionella_cerebrum_PMA_16bit_binned_1p297_oriented_front_1965x1926x3328.raw
When opening file in ImageJ Fiji, choose 16-bit Unsigned and Little-endian byte order. Opening as virtual stack is recommended. The voxel size is 1.29702 µm.

Segmentation (DragonFly)

Danionella_cerebrum_PMA_16bit_binned_1p297_oriented_front_1965x1926x3328_cropped_1224x1224x1645_segmentation.ORSSession
Dragonfly (https://www.theobjects.com/dragonfly) project file, which contains raw data cropped around the inner ear (1224x1224x1645, anchor at 369,246,412), handlabelled planes, interpolated binary ROIs (interpolated by biomedisa, https://biomedisa.info/), and meshgrids derived from these binary ROIs.

Meshgrids (Blender)

Danionella_cerebrum_PMA_16bit_binned_1p297_oriented_front_1965x1926x3328_cropped_1224x1224x1645_meshgrid.blend
This Blender project file contains downsampled meshgrids of segmented inner ear structures and an animation.

datacite.yml
Title The mechanism for directional hearing in fish
Authors Veith,Johannes;Einstein Center for Neurosciences, Charité – Universitätsmedizin Berlin, Germany - Institute for Biology, Humboldt University, Berlin, Germany
Chaigne,Thomas;Aix Marseille University, CNRS, Centrale Marseille, Institut Fresnel, Marseille, France - Einstein Center for Neurosciences, Charité – Universitätsmedizin Berlin, Germany
Svanidze,Ana;Einstein Center for Neurosciences, Charité – Universitätsmedizin Berlin, Germany
Dressler,Lena;Einstein Center for Neurosciences, Charité – Universitätsmedizin Berlin, Germany
Hoffmann,Maximilian;Einstein Center for Neurosciences, Charité – Universitätsmedizin Berlin, Germany
Gerhardt,Ben;Einstein Center for Neurosciences, Charité – Universitätsmedizin Berlin, Germany
Judkewitz,Benjamin;Einstein Center for Neurosciences, Charité – Universitätsmedizin Berlin, Germany
Description We provide trajectory data of directional acoustically evoked startles in adult Danionella cerebrum, Micro CT raw data and segmentation of the Danionella cerebrum hearing apparatus, and laser scanning confocal reflectance vibrometry data of inner ear structures.
License Creative Commons CC0 1.0 Public Domain Dedication (https://creativecommons.org/publicdomain/zero/1.0/)
References The mechanism for directional hearing in fish [doi:10.xxx/zzzz] (IsSupplementTo)
GitHub repository: The mechanism for directional hearing in fish [url:https://github.com/danionella/veith_et_al_2024] (IsReferencedBy)
Funding
Keywords Neuroscience
Danionella cerebrum
Directional Hearing
Startle Behavior
Inner Ear Anatomy
Schuijf Model
Neuroethology
Particle Motion
Vibrometry
Fish Hearing
Resource Type Dataset