danionella/Hoffmann_et_al_2023: This repository contains data related to Hoffmann, Henninger et al. 2023

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Maximilian Hoffmann b680a3782a Update 'README.md'		1 год назад
20230611_export_3.h5	55a2668bc9 data	1 год назад
LICENSE	5ab2aad548 Initial commit	1 год назад
README.md	b680a3782a Update 'README.md'	1 год назад

Maximilian Hoffmann b680a3782a Update 'README.md'

1 год назад

20230611_export_3.h5

55a2668bc9 data

1 год назад

LICENSE

5ab2aad548 Initial commit

1 год назад

README.md

b680a3782a Update 'README.md'

1 год назад

Blazed oblique plane microscopy reveals scale-invariant inference of brain-wide population activity

This repository contains data related to the manuscript "Blazed oblique plane microscopy reveals scale-invariant inference of brain-wide population activity".

The file 20230611_export_3.h5 contains data from 6 individuals Danionella cerebrum. The HDF5 datasets are named dset_0, dset_1, dset_2, dset_3, dset_4 and dset_5. Each dataset contains:

coords - the 3D coordinates of the recorded cells

traces - raw fluorescent traces obtained by the volumetric oblique plane microscopy at 1Hz

dff - the delta F/F derived from above traces, that serve as the entry point for the analysis pipeline deposited on GitHub