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@@ -7,5 +7,12 @@ niter=$4
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# activate the virtual environment
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. code/localpython/venv/python37/bin/activate
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+# FSL v5.0.9 directory
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+FSLDIR=~/fsl
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+. ${FSLDIR}/etc/fslconf/fsl.sh
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+PATH=${FSLDIR}/bin:${PATH}
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+export FSLDIR PATH
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+. ${FSLDIR}/etc/fslconf/fsl.sh
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+
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# call the script
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./code/predict_ppa.py -indir $indir -model $model -nfeat $nfeat -niter $niter
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