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studyforrest-ppa-analysis
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10.12751/g-node.7is9s6
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2nd-lvl_audio-ppa-ind.gfeat
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  7. <h2>Progress Report / Log</h2>
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  8. Started at Thu 19 Mar 2020 10:39:02 AM CET<p>
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  9. Feat main script<br><pre>
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  11. /bin/cp /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.fsf design.fsf
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  140. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 5953  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat/cope9.feat/design.fsf -D /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat/cope9.feat -I 9 -flame1
    141. 

  141. 30213
    142. 

  142. 

  143. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 30213 -t ./.flame
    144. 

  144. 31156
    145. 

  145. 

  146. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 31156  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat/cope9.feat/design.fsf -D /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat/cope9.feat -flame3
    147. 

  147. 31310
    148. 

  148. 

  149. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 31310  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat/cope9.feat/design.fsf -D /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat/cope9.feat -poststats 1
    150. 

  150. 31383
    151. 

  151. 

  152. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 31383  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat/cope9.feat/design.fsf -D /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat/cope9.feat -stop
    153. 

  153. 32334
    154. 

  154. 

  155. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 5953  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat/cope10.feat/design.fsf -D /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat/cope10.feat -I 10 -flame1
    156. 

  156. 32707
    157. 

  157. 

  158. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 32707 -t ./.flame
    159. 

  159. 1296
    160. 

  160. 

  161. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 1296  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat/cope10.feat/design.fsf -D /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat/cope10.feat -flame3
    162. 

  162. 1510
    163. 

  163. 

  164. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 1510  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat/cope10.feat/design.fsf -D /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat/cope10.feat -poststats 1
    165. 

  165. 1583
    166. 

  166. 

  167. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 1583  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat/cope10.feat/design.fsf -D /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat/cope10.feat -stop
    168. 

  168. 2524
    169. 

  169. 

  170. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 5953  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat/cope11.feat/design.fsf -D /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat/cope11.feat -I 11 -flame1
    171. 

  171. 2899
    172. 

  172. 

  173. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 2899 -t ./.flame
    174. 

  174. 3582
    175. 

  175. 

  176. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 3582  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat/cope11.feat/design.fsf -D /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat/cope11.feat -flame3
    177. 

  177. 4041
    178. 

  178. 

  179. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 4041  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat/cope11.feat/design.fsf -D /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat/cope11.feat -poststats 1
    180. 

  180. 4114
    181. 

  181. 

  182. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 4114  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat/cope11.feat/design.fsf -D /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat/cope11.feat -stop
    183. 

  183. 5027
    184. 

  184. 

  185. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 5953  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat/cope12.feat/design.fsf -D /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat/cope12.feat -I 12 -flame1
    186. 

  186. 5395
    187. 

  187. 

  188. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 5395 -t ./.flame
    189. 

  189. 6068
    190. 

  190. 

  191. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 6068  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat/cope12.feat/design.fsf -D /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat/cope12.feat -flame3
    192. 

  192. 6576
    193. 

  193. 

  194. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 6576  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat/cope12.feat/design.fsf -D /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat/cope12.feat -poststats 1
    195. 

  195. 6649
    196. 

  196. 

  197. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 6649  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat/cope12.feat/design.fsf -D /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat/cope12.feat -stop
    198. 

  198. 7454
    199. 

  199. 

  200. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 5953  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat/cope13.feat/design.fsf -D /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat/cope13.feat -I 13 -flame1
    201. 

  201. 7817
    202. 

  202. 

  203. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 7817 -t ./.flame
    204. 

  204. 8525
    205. 

  205. 

  206. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 8525  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat/cope13.feat/design.fsf -D /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat/cope13.feat -flame3
    207. 

  207. 9102
    208. 

  208. 

  209. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 9102  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat/cope13.feat/design.fsf -D /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat/cope13.feat -poststats 1
    210. 

  210. 9175
    211. 

  211. 

  212. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 9175  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat/cope13.feat/design.fsf -D /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat/cope13.feat -stop
    213. 

  213. 9980
    214. 

  214. 

  215. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 12182,14712,17236,19772,22285,24803,27270,29781,32334,2524,5027,7454,9980  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat/cope13.feat/design.fsf -D /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-ind.gfeat -stop
    216. 

  216. </pre><hr>Higher-level input files preparation<br><pre>
    217. 

  217. 

  218. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat
    219. 

  219. 

  220. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_mr2JOF -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    221. 

  221. 

  222. 

  223. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_3X4cn0 -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    224. 

  224. 

  225. 

  226. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_3d5x0o -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    227. 

  227. 

  228. 

  229. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_FbkuIo -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    230. 

  230. 

  231. 

  232. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_3jTF1B -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    233. 

  233. 

  234. 

  235. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_mP0ixL -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    236. 

  236. 

  237. 

  238. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_FBFfIV -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    239. 

  239. 

  240. 

  241. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_M8Vho2 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    242. 

  242. 

  243. 

  244. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_MfH2jc -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    245. 

  245. 

  246. 

  247. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_zHkG4l -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    248. 

  248. 

  249. 

  250. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_587Ybz -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    251. 

  251. 

  252. 

  253. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_AiO0ax -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    254. 

  254. 

  255. 

  256. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_bGae3G -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    257. 

  257. 

  258. 

  259. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_Dok0fS -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    260. 

  260. 

  261. 

  262. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_Ee1ve2 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    263. 

  263. 

  264. 

  265. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_Km9gBa -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    266. 

  266. 

  267. 

  268. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_7tI7bo -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    269. 

  269. 

  270. 

  271. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_DtfBJy -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    272. 

  272. 

  273. 

  274. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_Q8lUEw -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    275. 

  275. 

  276. 

  277. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_nPL2lG -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    278. 

  278. 

  279. 

  280. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_JrMtZT -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    281. 

  281. 

  282. 

  283. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_8zWVI3 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    284. 

  284. 

  285. 

  286. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_KkKd5b -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    287. 

  287. 

  288. 

  289. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_NqsOUl -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    290. 

  290. 

  291. 

  292. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_fH0Owv -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    293. 

  293. 

  294. 

  295. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_mG7gcy -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    296. 

  296. 

  297. 

  298. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_l8rDUI -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    299. 

  299. 

  300. 

  301. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_RXI0LS -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    302. 

  302. 

  303. 

  304. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_vlD6y4 -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
    305. 

  305. 

  306. 

  307. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat
    308. 

  308. 

  309. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_Dtphjj -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    310. 

  310. 

  311. 

  312. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_68d1WE -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    313. 

  313. 

  314. 

  315. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_POVaAU -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    316. 

  316. 

  317. 

  318. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_z7eCf5 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    319. 

  319. 

  320. 

  321. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_wQMQhi -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    322. 

  322. 

  323. 

  324. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_Ex8S7r -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    325. 

  325. 

  326. 

  327. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_BMHkwC -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    328. 

  328. 

  329. 

  330. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_GIfgrL -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    331. 

  331. 

  332. 

  333. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_l0lfRN -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    334. 

  334. 

  335. 

  336. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_ULm3WV -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    337. 

  337. 

  338. 

  339. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_ALuRq6 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    340. 

  340. 

  341. 

  342. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_LidI7i -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    343. 

  343. 

  344. 

  345. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_pjWnKt -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    346. 

  346. 

  347. 

  348. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_rBjUwD -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    349. 

  349. 

  350. 

  351. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_Gz83JL -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    352. 

  352. 

  353. 

  354. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_MilZsP -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    355. 

  355. 

  356. 

  357. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_MiIlyX -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    358. 

  358. 

  359. 

  360. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_HNGdb7 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    361. 

  361. 

  362. 

  363. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_48iiRh -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    364. 

  364. 

  365. 

  366. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_X0taJu -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    367. 

  367. 

  368. 

  369. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_u0nlwE -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    370. 

  370. 

  371. 

  372. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_XOjs3N -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    373. 

  373. 

  374. 

  375. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_sj8gSM -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    376. 

  376. 

  377. 

  378. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_gXohFZ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    379. 

  379. 

  380. 

  381. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_7lCsA8 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    382. 

  382. 

  383. 

  384. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_PE6jSl -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    385. 

  385. 

  386. 

  387. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_aZtwkw -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    388. 

  388. 

  389. 

  390. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_h2JsyE -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    391. 

  391. 

  392. 

  393. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_iqB7vS -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
    394. 

  394. 

  395. 

  396. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat
    397. 

  397. 

  398. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_IuerCV -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    399. 

  399. 

  400. 

  401. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_VM4nul -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    402. 

  402. 

  403. 

  404. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_lAjCEI -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    405. 

  405. 

  406. 

  407. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_nOXciS -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    408. 

  408. 

  409. 

  410. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_eL8rMV -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    411. 

  411. 

  412. 

  413. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_BpRoD5 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    414. 

  414. 

  415. 

  416. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_bS3cdf -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    417. 

  417. 

  418. 

  419. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_qeRh4o -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    420. 

  420. 

  421. 

  422. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_UVaAgx -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    423. 

  423. 

  424. 

  425. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_b0H5WH -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    426. 

  426. 

  427. 

  428. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_f2AwTU -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    429. 

  429. 

  430. 

  431. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_Fp13u5 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    432. 

  432. 

  433. 

  434. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_W6eDs6 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    435. 

  435. 

  436. 

  437. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_tKZ8gg -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    438. 

  438. 

  439. 

  440. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_2fLV5p -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    441. 

  441. 

  442. 

  443. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_MtmRzA -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    444. 

  444. 

  445. 

  446. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_4yxR8J -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    447. 

  447. 

  448. 

  449. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_iyvMlS -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    450. 

  450. 

  451. 

  452. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_ZsRk95 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    453. 

  453. 

  454. 

  455. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_Y4wyz5 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    456. 

  456. 

  457. 

  458. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_EDJvTd -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    459. 

  459. 

  460. 

  461. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_qMWxao -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    462. 

  462. 

  463. 

  464. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_4V8YkB -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    465. 

  465. 

  466. 

  467. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_8d9LQK -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    468. 

  468. 

  469. 

  470. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_KMfuzV -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    471. 

  471. 

  472. 

  473. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_S2CZC3 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    474. 

  474. 

  475. 

  476. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_ZBrkq5 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    477. 

  477. 

  478. 

  479. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_zkN0Qf -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    480. 

  480. 

  481. 

  482. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_vs6BDr -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
    483. 

  483. 

  484. 

  485. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat
    486. 

  486. 

  487. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_tm0YmG -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    488. 

  488. 

  489. 

  490. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_Rpk2D2 -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    491. 

  491. 

  492. 

  493. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_WpjIPk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    494. 

  494. 

  495. 

  496. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_zH7axu -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    497. 

  497. 

  498. 

  499. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_ugy1pE -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    500. 

  500. 

  501. 

  502. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_fMM8cO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    503. 

  503. 

  504. 

  505. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_NSK4kW -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    506. 

  506. 

  507. 

  508. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_hKIL66 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    509. 

  509. 

  510. 

  511. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_4HvIRg -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    512. 

  512. 

  513. 

  514. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_QRIDOh -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    515. 

  515. 

  516. 

  517. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_2Yt9rs -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    518. 

  518. 

  519. 

  520. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_ks0p0B -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    521. 

  521. 

  522. 

  523. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_trn9KP -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    524. 

  524. 

  525. 

  526. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_sqUGeZ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    527. 

  527. 

  528. 

  529. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_KtMZv8 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    530. 

  530. 

  531. 

  532. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_yr0h0h -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    533. 

  533. 

  534. 

  535. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_rIVhWk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    536. 

  536. 

  537. 

  538. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_56VSzu -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    539. 

  539. 

  540. 

  541. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_I2h02C -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    542. 

  542. 

  543. 

  544. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_FEBRHM -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    545. 

  545. 

  546. 

  547. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_vF5qfX -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    548. 

  548. 

  549. 

  550. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_1Ch599 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    551. 

  551. 

  552. 

  553. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_WEHv7j -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    554. 

  554. 

  555. 

  556. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_Xui2Ot -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    557. 

  557. 

  558. 

  559. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_6iYn6r -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    560. 

  560. 

  561. 

  562. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_82wyqB -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    563. 

  563. 

  564. 

  565. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_i18j3L -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    566. 

  566. 

  567. 

  568. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_tywd8V -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    569. 

  569. 

  570. 

  571. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_fo0lF7 -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
    572. 

  572. 

  573. 

  574. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat
    575. 

  575. 

  576. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_IzRWOm -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    577. 

  577. 

  578. 

  579. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_zLgWTx -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    580. 

  580. 

  581. 

  582. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_NxN4fY -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    583. 

  583. 

  584. 

  585. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_UFCkG6 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    586. 

  586. 

  587. 

  588. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_ZN4y4g -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    589. 

  589. 

  590. 

  591. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_KbcY4q -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    592. 

  592. 

  593. 

  594. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_6ia5Ot -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    595. 

  595. 

  596. 

  597. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_WhaqKD -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    598. 

  598. 

  599. 

  600. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_BWjcnN -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    601. 

  601. 

  602. 

  603. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_TnJetW -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    604. 

  604. 

  605. 

  606. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_vXS6j6 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    607. 

  607. 

  608. 

  609. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_qmqtKf -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    610. 

  610. 

  611. 

  612. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_un1xCs -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    613. 

  613. 

  614. 

  615. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_QxHg5C -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    616. 

  616. 

  617. 

  618. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_rEjluE -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    619. 

  619. 

  620. 

  621. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_j7rAjO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    622. 

  622. 

  623. 

  624. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_yfZxVU -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    625. 

  625. 

  626. 

  627. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_rc6mN4 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    628. 

  628. 

  629. 

  630. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_pQBtRh -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    631. 

  631. 

  632. 

  633. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_kEQNEr -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    634. 

  634. 

  635. 

  636. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_Lp9QmC -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    637. 

  637. 

  638. 

  639. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_ThaFlz -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    640. 

  640. 

  641. 

  642. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_BeiS2J -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    643. 

  643. 

  644. 

  645. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_P1YqOT -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    646. 

  646. 

  647. 

  648. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_OKMh33 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    649. 

  649. 

  650. 

  651. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_42q8Hd -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    652. 

  652. 

  653. 

  654. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_gpxqLq -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    655. 

  655. 

  656. 

  657. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_cqmbjA -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    658. 

  658. 

  659. 

  660. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_A4j3WJ -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
    661. 

  661. 

  662. 

  663. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat
    664. 

  664. 

  665. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_F9lhyQ -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    666. 

  666. 

  667. 

  668. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_IVTRNb -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    669. 

  669. 

  670. 

  671. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_TVoMmA -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    672. 

  672. 

  673. 

  674. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_3RCXdO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    675. 

  675. 

  676. 

  677. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_YmOJ4L -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    678. 

  678. 

  679. 

  680. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_YXlgLW -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    681. 

  681. 

  682. 

  683. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_HEL8y6 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    684. 

  684. 

  685. 

  686. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_Ydgknj -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    687. 

  687. 

  688. 

  689. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_FiMfYt -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    690. 

  690. 

  691. 

  692. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_rfWB3B -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    693. 

  693. 

  694. 

  695. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_iUKipP -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    696. 

  696. 

  697. 

  698. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_VMLT9N -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    699. 

  699. 

  700. 

  701. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_hflk0X -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    702. 

  702. 

  703. 

  704. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_OA5az7 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    705. 

  705. 

  706. 

  707. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_pdvNJk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    708. 

  708. 

  709. 

  710. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_SA5lzu -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    711. 

  711. 

  712. 

  713. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_Ub8PHE -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    714. 

  714. 

  715. 

  716. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_3i4XQN -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    717. 

  717. 

  718. 

  719. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_ho6HRO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    720. 

  720. 

  721. 

  722. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_Mp7yp0 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    723. 

  723. 

  724. 

  725. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_h7Rv59 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    726. 

  726. 

  727. 

  728. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_oc9L8j -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    729. 

  729. 

  730. 

  731. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_m5dYrs -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    732. 

  732. 

  733. 

  734. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_lFzV3B -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    735. 

  735. 

  736. 

  737. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_GlsBHL -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    738. 

  738. 

  739. 

  740. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_uCs9rW -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    741. 

  741. 

  742. 

  743. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_J8F6aZ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    744. 

  744. 

  745. 

  746. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_HQjqS8 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    747. 

  747. 

  748. 

  749. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_hKKOWk -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
    750. 

  750. 

  751. 

  752. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat
    753. 

  753. 

  754. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_fTkyEz -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    755. 

  755. 

  756. 

  757. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_z6kYIS -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    758. 

  758. 

  759. 

  760. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_UjUgta -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    761. 

  761. 

  762. 

  763. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_NIgZqj -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    764. 

  764. 

  765. 

  766. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_3Bn2bt -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    767. 

  767. 

  768. 

  769. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_AmpiaE -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    770. 

  770. 

  771. 

  772. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_3vy05N -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    773. 

  773. 

  774. 

  775. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_APfGCX -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    776. 

  776. 

  777. 

  778. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_YpT1m7 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    779. 

  779. 

  780. 

  781. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_aV16m5 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    782. 

  782. 

  783. 

  784. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_mvCRli -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    785. 

  785. 

  786. 

  787. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_sGsCUs -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    788. 

  788. 

  789. 

  790. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_gi52FC -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    791. 

  791. 

  792. 

  793. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_a742vM -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    794. 

  794. 

  795. 

  796. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_AlgQWU -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    797. 

  797. 

  798. 

  799. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_abmlz5 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    800. 

  800. 

  801. 

  802. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_yv8CM7 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    803. 

  803. 

  804. 

  805. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_xNcn5f -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    806. 

  806. 

  807. 

  808. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_Ve6ZPq -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    809. 

  809. 

  810. 

  811. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_lnyzkA -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    812. 

  812. 

  813. 

  814. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_2Ha2eO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    815. 

  815. 

  816. 

  817. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_40fzZX -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    818. 

  818. 

  819. 

  820. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_2EhLz7 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    821. 

  821. 

  822. 

  823. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_YECVmh -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    824. 

  824. 

  825. 

  826. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_DcXHBf -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    827. 

  827. 

  828. 

  829. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_xXi7ip -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    830. 

  830. 

  831. 

  832. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_1qdQez -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    833. 

  833. 

  834. 

  835. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_WpBEpM -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    836. 

  836. 

  837. 

  838. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_bbuKEW -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
    839. 

  839. 

  840. 

  841. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat
    842. 

  842. 

  843. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_grPySa -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    844. 

  844. 

  845. 

  846. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_rATuRo -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    847. 

  847. 

  848. 

  849. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_V6z4hO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    850. 

  850. 

  851. 

  852. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_yAIzcY -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    853. 

  853. 

  854. 

  855. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_DnyEp6 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    856. 

  856. 

  857. 

  858. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_19Lbgk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    859. 

  859. 

  860. 

  861. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_0zVPdl -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    862. 

  862. 

  863. 

  864. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_9OJoZu -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    865. 

  865. 

  866. 

  867. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_yG98XE -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    868. 

  868. 

  869. 

  870. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_HsPXSO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    871. 

  871. 

  872. 

  873. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_CWPdrZ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    874. 

  874. 

  875. 

  876. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_6dUjl7 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    877. 

  877. 

  878. 

  879. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_vaTB9h -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    880. 

  880. 

  881. 

  882. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_uX1NAk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    883. 

  883. 

  884. 

  885. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_2w4PZs -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    886. 

  886. 

  887. 

  888. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_8AUqyC -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    889. 

  889. 

  890. 

  891. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_zaIC9M -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    892. 

  892. 

  893. 

  894. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_ubtT2Z -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    895. 

  895. 

  896. 

  897. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_DX5KLa -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    898. 

  898. 

  899. 

  900. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_uvSVOi -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    901. 

  901. 

  902. 

  903. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_pBTgft -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    904. 

  904. 

  905. 

  906. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_h7lUNv -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    907. 

  907. 

  908. 

  909. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_gA3W4D -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    910. 

  910. 

  911. 

  912. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_LJzjJN -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    913. 

  913. 

  914. 

  915. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_m6c1vY -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    916. 

  916. 

  917. 

  918. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_TCIJ07 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    919. 

  919. 

  920. 

  921. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_RymXTk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    922. 

  922. 

  923. 

  924. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_3kjZFv -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    925. 

  925. 

  926. 

  927. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_6evKJv -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
    928. 

  928. 

  929. 

  930. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg/standard bg_image
    931. 

  931. 

  932. /usr/share/fsl/5.0/bin/fslmerge -t mask  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/mask
    933. 

  933. 

  934. mkdir -p inputreg
    935. 

  935. 

  936. /usr/share/fsl/5.0/bin/fslmaths ../mask -mul 8 -Tmean masksum -odt short
    937. 

  937. 

  938. /usr/share/fsl/5.0/bin/fslmaths masksum -thr 8 -add masksum masksum
    939. 

  939. 

  940. /usr/share/fsl/5.0/bin/overlay 0 0 -c ../bg_image -a masksum 0.9 16 masksum_overlay
    941. 

  941. 

  942. /usr/share/fsl/5.0/bin/slicer masksum_overlay -S 2 750 masksum_overlay.png
    943. 

  943. 

  944. /usr/share/fsl/5.0/bin/fslmaths masksum -mul 0 maskunique
    945. 

  945. 

  946. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 1 -add maskunique maskunique
    947. 

  947. 

  948. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 2 -add maskunique maskunique
    949. 

  949. 

  950. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 3 -add maskunique maskunique
    951. 

  951. 

  952. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 4 -add maskunique maskunique
    953. 

  953. 

  954. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 5 -add maskunique maskunique
    955. 

  955. 

  956. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 6 -add maskunique maskunique
    957. 

  957. 

  958. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 7 -add maskunique maskunique
    959. 

  959. 

  960. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 8 -add maskunique maskunique
    961. 

  961. 

  962. /usr/share/fsl/5.0/bin/fslmaths masksum -thr 7 -uthr 7 -bin -mul maskunique maskunique
    963. 

  963. 

  964. /usr/share/fsl/5.0/bin/overlay 0 0 ../bg_image -a maskunique 0.9 8 maskunique_overlay
    965. 

  965. 

  966. /usr/share/fsl/5.0/bin/slicer maskunique_overlay -S 2 750 maskunique_overlay.png
    967. 

  967. 

  968. /bin/cp /usr/share/fsl/5.0/etc/luts/ramp.gif .ramp.gif
    969. 

  969. 

  970. /usr/share/fsl/5.0/bin/fslmaths mask -Tmin mask
    971. 

  971. 

  972. /usr/share/fsl/5.0/bin/fslmerge -t mean_func  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/mean_func
    973. 

  973. 

  974. /usr/share/fsl/5.0/bin/fslmaths mean_func -Tmean mean_func
    975. 

  975. 

  976. /usr/share/fsl/5.0/bin/fslmerge -t cope1  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope1
    977. 

  977. 

  978. /usr/share/fsl/5.0/bin/fslmaths cope1 -mas mask cope1
    979. 

  979. 

  980. printf '0.036220672499999995 ' >> design.lcon
    981. 

  981. 

  982. /usr/share/fsl/5.0/bin/fslmerge -t varcope1  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope1
    983. 

  983. 

  984. /usr/share/fsl/5.0/bin/fslmaths varcope1 -mas mask varcope1
    985. 

  985. 

  986. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1
    987. 

  987. 

  988. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1
    989. 

  989. 

  990. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1
    991. 

  991. 

  992. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1
    993. 

  993. 

  994. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1
    995. 

  995. 

  996. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1
    997. 

  997. 

  998. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1
    999. 

  999. 

  1000. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1
    1001. 

  1001. 

  1002. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t1  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1
    1003. 

  1003. 

  1004. /usr/share/fsl/5.0/bin/fslmaths tdof_t1 -mas mask tdof_t1
    1005. 

  1005. 

  1006. /usr/share/fsl/5.0/bin/fslmerge -t cope2  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope2
    1007. 

  1007. 

  1008. /usr/share/fsl/5.0/bin/fslmaths cope2 -mas mask cope2
    1009. 

  1009. 

  1010. printf '0.03809893375 ' >> design.lcon
    1011. 

  1011. 

  1012. /usr/share/fsl/5.0/bin/fslmerge -t varcope2  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope2
    1013. 

  1013. 

  1014. /usr/share/fsl/5.0/bin/fslmaths varcope2 -mas mask varcope2
    1015. 

  1015. 

  1016. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2
    1017. 

  1017. 

  1018. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2
    1019. 

  1019. 

  1020. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2
    1021. 

  1021. 

  1022. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2
    1023. 

  1023. 

  1024. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2
    1025. 

  1025. 

  1026. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2
    1027. 

  1027. 

  1028. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2
    1029. 

  1029. 

  1030. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2
    1031. 

  1031. 

  1032. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t2  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2
    1033. 

  1033. 

  1034. /usr/share/fsl/5.0/bin/fslmaths tdof_t2 -mas mask tdof_t2
    1035. 

  1035. 

  1036. /usr/share/fsl/5.0/bin/fslmerge -t cope3  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope3
    1037. 

  1037. 

  1038. /usr/share/fsl/5.0/bin/fslmaths cope3 -mas mask cope3
    1039. 

  1039. 

  1040. printf '0.01731664 ' >> design.lcon
    1041. 

  1041. 

  1042. /usr/share/fsl/5.0/bin/fslmerge -t varcope3  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope3
    1043. 

  1043. 

  1044. /usr/share/fsl/5.0/bin/fslmaths varcope3 -mas mask varcope3
    1045. 

  1045. 

  1046. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3
    1047. 

  1047. 

  1048. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3
    1049. 

  1049. 

  1050. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3
    1051. 

  1051. 

  1052. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3
    1053. 

  1053. 

  1054. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3
    1055. 

  1055. 

  1056. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3
    1057. 

  1057. 

  1058. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3
    1059. 

  1059. 

  1060. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3
    1061. 

  1061. 

  1062. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t3  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3
    1063. 

  1063. 

  1064. /usr/share/fsl/5.0/bin/fslmaths tdof_t3 -mas mask tdof_t3
    1065. 

  1065. 

  1066. /usr/share/fsl/5.0/bin/fslmerge -t cope4  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope4
    1067. 

  1067. 

  1068. /usr/share/fsl/5.0/bin/fslmaths cope4 -mas mask cope4
    1069. 

  1069. 

  1070. printf '0.03532390625 ' >> design.lcon
    1071. 

  1071. 

  1072. /usr/share/fsl/5.0/bin/fslmerge -t varcope4  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope4
    1073. 

  1073. 

  1074. /usr/share/fsl/5.0/bin/fslmaths varcope4 -mas mask varcope4
    1075. 

  1075. 

  1076. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4
    1077. 

  1077. 

  1078. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4
    1079. 

  1079. 

  1080. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4
    1081. 

  1081. 

  1082. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4
    1083. 

  1083. 

  1084. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4
    1085. 

  1085. 

  1086. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4
    1087. 

  1087. 

  1088. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4
    1089. 

  1089. 

  1090. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4
    1091. 

  1091. 

  1092. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t4  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4
    1093. 

  1093. 

  1094. /usr/share/fsl/5.0/bin/fslmaths tdof_t4 -mas mask tdof_t4
    1095. 

  1095. 

  1096. /usr/share/fsl/5.0/bin/fslmerge -t cope5  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope5
    1097. 

  1097. 

  1098. /usr/share/fsl/5.0/bin/fslmaths cope5 -mas mask cope5
    1099. 

  1099. 

  1100. printf '0.02982784875 ' >> design.lcon
    1101. 

  1101. 

  1102. /usr/share/fsl/5.0/bin/fslmerge -t varcope5  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope5
    1103. 

  1103. 

  1104. /usr/share/fsl/5.0/bin/fslmaths varcope5 -mas mask varcope5
    1105. 

  1105. 

  1106. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5
    1107. 

  1107. 

  1108. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5
    1109. 

  1109. 

  1110. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5
    1111. 

  1111. 

  1112. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5
    1113. 

  1113. 

  1114. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5
    1115. 

  1115. 

  1116. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5
    1117. 

  1117. 

  1118. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5
    1119. 

  1119. 

  1120. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5
    1121. 

  1121. 

  1122. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t5  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5
    1123. 

  1123. 

  1124. /usr/share/fsl/5.0/bin/fslmaths tdof_t5 -mas mask tdof_t5
    1125. 

  1125. 

  1126. /usr/share/fsl/5.0/bin/fslmerge -t cope6  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope6
    1127. 

  1127. 

  1128. /usr/share/fsl/5.0/bin/fslmaths cope6 -mas mask cope6
    1129. 

  1129. 

  1130. printf '0.02917550625 ' >> design.lcon
    1131. 

  1131. 

  1132. /usr/share/fsl/5.0/bin/fslmerge -t varcope6  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope6
    1133. 

  1133. 

  1134. /usr/share/fsl/5.0/bin/fslmaths varcope6 -mas mask varcope6
    1135. 

  1135. 

  1136. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6
    1137. 

  1137. 

  1138. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6
    1139. 

  1139. 

  1140. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6
    1141. 

  1141. 

  1142. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6
    1143. 

  1143. 

  1144. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6
    1145. 

  1145. 

  1146. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6
    1147. 

  1147. 

  1148. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6
    1149. 

  1149. 

  1150. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6
    1151. 

  1151. 

  1152. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t6  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6
    1153. 

  1153. 

  1154. /usr/share/fsl/5.0/bin/fslmaths tdof_t6 -mas mask tdof_t6
    1155. 

  1155. 

  1156. /usr/share/fsl/5.0/bin/fslmerge -t cope7  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope7
    1157. 

  1157. 

  1158. /usr/share/fsl/5.0/bin/fslmaths cope7 -mas mask cope7
    1159. 

  1159. 

  1160. printf '0.0248213025 ' >> design.lcon
    1161. 

  1161. 

  1162. /usr/share/fsl/5.0/bin/fslmerge -t varcope7  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope7
    1163. 

  1163. 

  1164. /usr/share/fsl/5.0/bin/fslmaths varcope7 -mas mask varcope7
    1165. 

  1165. 

  1166. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7
    1167. 

  1167. 

  1168. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7
    1169. 

  1169. 

  1170. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7
    1171. 

  1171. 

  1172. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7
    1173. 

  1173. 

  1174. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7
    1175. 

  1175. 

  1176. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7
    1177. 

  1177. 

  1178. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7
    1179. 

  1179. 

  1180. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7
    1181. 

  1181. 

  1182. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t7  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7
    1183. 

  1183. 

  1184. /usr/share/fsl/5.0/bin/fslmaths tdof_t7 -mas mask tdof_t7
    1185. 

  1185. 

  1186. /usr/share/fsl/5.0/bin/fslmerge -t cope8  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope8
    1187. 

  1187. 

  1188. /usr/share/fsl/5.0/bin/fslmaths cope8 -mas mask cope8
    1189. 

  1189. 

  1190. printf '0.08684008375 ' >> design.lcon
    1191. 

  1191. 

  1192. /usr/share/fsl/5.0/bin/fslmerge -t varcope8  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope8
    1193. 

  1193. 

  1194. /usr/share/fsl/5.0/bin/fslmaths varcope8 -mas mask varcope8
    1195. 

  1195. 

  1196. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8
    1197. 

  1197. 

  1198. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8
    1199. 

  1199. 

  1200. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8
    1201. 

  1201. 

  1202. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8
    1203. 

  1203. 

  1204. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8
    1205. 

  1205. 

  1206. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8
    1207. 

  1207. 

  1208. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8
    1209. 

  1209. 

  1210. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8
    1211. 

  1211. 

  1212. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t8  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8
    1213. 

  1213. 

  1214. /usr/share/fsl/5.0/bin/fslmaths tdof_t8 -mas mask tdof_t8
    1215. 

  1215. 

  1216. /usr/share/fsl/5.0/bin/fslmerge -t cope9  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope9
    1217. 

  1217. 

  1218. /usr/share/fsl/5.0/bin/fslmaths cope9 -mas mask cope9
    1219. 

  1219. 

  1220. printf '0.06037862625 ' >> design.lcon
    1221. 

  1221. 

  1222. /usr/share/fsl/5.0/bin/fslmerge -t varcope9  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope9
    1223. 

  1223. 

  1224. /usr/share/fsl/5.0/bin/fslmaths varcope9 -mas mask varcope9
    1225. 

  1225. 

  1226. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9
    1227. 

  1227. 

  1228. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9
    1229. 

  1229. 

  1230. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9
    1231. 

  1231. 

  1232. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9
    1233. 

  1233. 

  1234. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9
    1235. 

  1235. 

  1236. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9
    1237. 

  1237. 

  1238. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9
    1239. 

  1239. 

  1240. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9
    1241. 

  1241. 

  1242. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t9  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9
    1243. 

  1243. 

  1244. /usr/share/fsl/5.0/bin/fslmaths tdof_t9 -mas mask tdof_t9
    1245. 

  1245. 

  1246. /usr/share/fsl/5.0/bin/fslmerge -t cope10  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope10
    1247. 

  1247. 

  1248. /usr/share/fsl/5.0/bin/fslmaths cope10 -mas mask cope10
    1249. 

  1249. 

  1250. printf '0.03953572625 ' >> design.lcon
    1251. 

  1251. 

  1252. /usr/share/fsl/5.0/bin/fslmerge -t varcope10  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope10
    1253. 

  1253. 

  1254. /usr/share/fsl/5.0/bin/fslmaths varcope10 -mas mask varcope10
    1255. 

  1255. 

  1256. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10
    1257. 

  1257. 

  1258. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10
    1259. 

  1259. 

  1260. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10
    1261. 

  1261. 

  1262. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10
    1263. 

  1263. 

  1264. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10
    1265. 

  1265. 

  1266. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10
    1267. 

  1267. 

  1268. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10
    1269. 

  1269. 

  1270. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10
    1271. 

  1271. 

  1272. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t10  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10
    1273. 

  1273. 

  1274. /usr/share/fsl/5.0/bin/fslmaths tdof_t10 -mas mask tdof_t10
    1275. 

  1275. 

  1276. /usr/share/fsl/5.0/bin/fslmerge -t cope11  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope11
    1277. 

  1277. 

  1278. /usr/share/fsl/5.0/bin/fslmaths cope11 -mas mask cope11
    1279. 

  1279. 

  1280. printf '0.0465150475 ' >> design.lcon
    1281. 

  1281. 

  1282. /usr/share/fsl/5.0/bin/fslmerge -t varcope11  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope11
    1283. 

  1283. 

  1284. /usr/share/fsl/5.0/bin/fslmaths varcope11 -mas mask varcope11
    1285. 

  1285. 

  1286. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11
    1287. 

  1287. 

  1288. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11
    1289. 

  1289. 

  1290. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11
    1291. 

  1291. 

  1292. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11
    1293. 

  1293. 

  1294. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11
    1295. 

  1295. 

  1296. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11
    1297. 

  1297. 

  1298. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11
    1299. 

  1299. 

  1300. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11
    1301. 

  1301. 

  1302. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t11  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11
    1303. 

  1303. 

  1304. /usr/share/fsl/5.0/bin/fslmaths tdof_t11 -mas mask tdof_t11
    1305. 

  1305. 

  1306. /usr/share/fsl/5.0/bin/fslmerge -t cope12  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope12
    1307. 

  1307. 

  1308. /usr/share/fsl/5.0/bin/fslmaths cope12 -mas mask cope12
    1309. 

  1309. 

  1310. printf '0.029742005 ' >> design.lcon
    1311. 

  1311. 

  1312. /usr/share/fsl/5.0/bin/fslmerge -t varcope12  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope12
    1313. 

  1313. 

  1314. /usr/share/fsl/5.0/bin/fslmaths varcope12 -mas mask varcope12
    1315. 

  1315. 

  1316. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12
    1317. 

  1317. 

  1318. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12
    1319. 

  1319. 

  1320. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12
    1321. 

  1321. 

  1322. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12
    1323. 

  1323. 

  1324. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12
    1325. 

  1325. 

  1326. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12
    1327. 

  1327. 

  1328. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12
    1329. 

  1329. 

  1330. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12
    1331. 

  1331. 

  1332. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t12  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12
    1333. 

  1333. 

  1334. /usr/share/fsl/5.0/bin/fslmaths tdof_t12 -mas mask tdof_t12
    1335. 

  1335. 

  1336. /usr/share/fsl/5.0/bin/fslmerge -t cope13  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope13
    1337. 

  1337. 

  1338. /usr/share/fsl/5.0/bin/fslmaths cope13 -mas mask cope13
    1339. 

  1339. 

  1340. printf '0.04307867 ' >> design.lcon
    1341. 

  1341. 

  1342. /usr/share/fsl/5.0/bin/fslmerge -t varcope13  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope13
    1343. 

  1343. 

  1344. /usr/share/fsl/5.0/bin/fslmaths varcope13 -mas mask varcope13
    1345. 

  1345. 

  1346. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13
    1347. 

  1347. 

  1348. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13
    1349. 

  1349. 

  1350. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13
    1351. 

  1351. 

  1352. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13
    1353. 

  1353. 

  1354. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13
    1355. 

  1355. 

  1356. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13
    1357. 

  1357. 

  1358. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13
    1359. 

  1359. 

  1360. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13
    1361. 

  1361. 

  1362. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t13  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13
    1363. 

  1363. 

  1364. /usr/share/fsl/5.0/bin/fslmaths tdof_t13 -mas mask tdof_t13
    1365. 

  1365. </pre><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br></BODY></HTML>
    1366.