chaeusler
/
studyforrest-ppa-analysis


			
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<TITLE>FSL</TITLE></HEAD><BODY><OBJECT data=report.html></OBJECT>
<h2>Progress Report / Log</h2>
Started at Sat 14 Mar 2020 12:59:48 AM CET<p>
Feat main script<br><pre>

/bin/cp /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.fsf design.fsf

/usr/share/fsl/5.0/bin/feat_model design

mkdir .files;cp /usr/share/fsl/5.0/doc/fsl.css .files;cp -r /usr/share/fsl/5.0/doc/images .files/images

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat2_pre   /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat -gfeatprep
28860

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 28860  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope1.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope1.feat -I 1 -flame1
8955

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 8955 -t ./.flame
9996

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 9996  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope1.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope1.feat -flame3
11191

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 11191  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope1.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope1.feat -poststats 1
11325

/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 11325  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope1.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope1.feat -stop
12776

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 28860  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope2.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope2.feat -I 2 -flame1
13419

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 13419 -t ./.flame
14927

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 14927  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope2.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope2.feat -flame3
16335

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 16335  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope2.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope2.feat -poststats 1
16484

/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 16484  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope2.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope2.feat -stop
17931

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 28860  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope3.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope3.feat -I 3 -flame1
18629

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 18629 -t ./.flame
19914

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 19914  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope3.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope3.feat -flame3
21423

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 21423  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope3.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope3.feat -poststats 1
21542

/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 21542  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope3.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope3.feat -stop
22871

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 28860  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope4.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope4.feat -I 4 -flame1
23664

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 23664 -t ./.flame
24855

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 24855  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope4.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope4.feat -flame3
26462

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 26462  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope4.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope4.feat -poststats 1
26620

/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 26620  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope4.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope4.feat -stop
27852

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 28860  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope5.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope5.feat -I 5 -flame1
28719

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 28719 -t ./.flame
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 29732  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope5.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope5.feat -flame3
31509

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 31509  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope5.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope5.feat -poststats 1
31654

/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 31654  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope5.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope5.feat -stop
430

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 28860  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope6.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope6.feat -I 6 -flame1
1173

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 1173 -t ./.flame
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 2264  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope6.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope6.feat -flame3
4107

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 4107  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope6.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope6.feat -poststats 1
4263

/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 4263  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope6.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope6.feat -stop
5475

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 28860  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope7.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope7.feat -I 7 -flame1
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 6254 -t ./.flame
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 7347  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope7.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope7.feat -flame3
9168

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 9168  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope7.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope7.feat -poststats 1
9313

/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 9313  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope7.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope7.feat -stop
10521

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 28860  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope8.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope8.feat -I 8 -flame1
11343

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 11343 -t ./.flame
12408

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 12408  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope8.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope8.feat -flame3
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 14207  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope8.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope8.feat -poststats 1
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/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 14363  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope8.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope8.feat -stop
15770

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 28860  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope9.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope9.feat -I 9 -flame1
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 16681 -t ./.flame
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 17628  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope9.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope9.feat -flame3
19351

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 19351  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope9.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope9.feat -poststats 1
19541

/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 19541  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope9.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope9.feat -stop
20706

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 28860  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope10.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope10.feat -I 10 -flame1
21440

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 21440 -t ./.flame
22557

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 22557  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope10.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope10.feat -flame3
24340

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 24340  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope10.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope10.feat -poststats 1
24558

/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 24558  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope10.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope10.feat -stop
25750

/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 12776,17931,22871,27852,430,5475,10521,15770,20706,25750  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat/cope10.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_movie-ppa-grp.gfeat -stop
</pre><hr>Higher-level input files preparation<br><pre>

/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat

/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=example_func --out=frgrot_R9aLx1 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mean_func --out=frgrot_3qZHgB --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope1 --out=frgrot_BBlCNj --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope10 --out=frgrot_s4dBTu --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope2 --out=frgrot_VKHu6R --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope3 --out=frgrot_JNkQ1a --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope4 --out=frgrot_zL9RBw --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope5 --out=frgrot_mwo3zL --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope6 --out=frgrot_O8DGY5 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope7 --out=frgrot_tkNPeo --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope8 --out=frgrot_w2M29A --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope9 --out=frgrot_Z3yk1T --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope1 --out=frgrot_X8T7kd --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope10 --out=frgrot_p9W8fA --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope2 --out=frgrot_VVxoJI --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope3 --out=frgrot_ZQVff6 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope4 --out=frgrot_NUBYNo --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope5 --out=frgrot_wvhxzK --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope6 --out=frgrot_64yvpW --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope7 --out=frgrot_iO3Ekm --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope8 --out=frgrot_PdE6LE --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope9 --out=frgrot_OGdFRT --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mask --out=frgrot_epcwxf --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=nn


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat

/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=example_func --out=frgrot_JaKy1A --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mean_func --out=frgrot_Ho706h --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope1 --out=frgrot_rvqjk2 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope10 --out=frgrot_Amg2jc --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope2 --out=frgrot_rLlitz --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope3 --out=frgrot_ttdaOT --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope4 --out=frgrot_Ntiuq3 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope5 --out=frgrot_LMLcRq --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope6 --out=frgrot_yQLz6K --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope7 --out=frgrot_K96o16 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope8 --out=frgrot_TOpBRi --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope9 --out=frgrot_swd6GA --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope1 --out=frgrot_PwERaV --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope10 --out=frgrot_236gQ6 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope2 --out=frgrot_GQh2lt --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope3 --out=frgrot_7iYPfM --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope4 --out=frgrot_vaAhk6 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope5 --out=frgrot_3MZL1k --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope6 --out=frgrot_5Si4lE --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope7 --out=frgrot_yaq310 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope8 --out=frgrot_yfLAic --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope9 --out=frgrot_Npxmyw --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mask --out=frgrot_wK42vR --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=nn


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat

/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=example_func --out=frgrot_w8rU3j --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mean_func --out=frgrot_uxD9zS --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope1 --out=frgrot_RvucHq --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope10 --out=frgrot_Xe1blN --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope2 --out=frgrot_RgF045 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope3 --out=frgrot_fQB8ts --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope4 --out=frgrot_In7VDF --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope5 --out=frgrot_9MxQfY --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope6 --out=frgrot_AbmcDl --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope7 --out=frgrot_6vFufx --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope8 --out=frgrot_s38aJS --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope9 --out=frgrot_pRJZMf --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope1 --out=frgrot_W0T9ux --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope10 --out=frgrot_cWwjzK --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope2 --out=frgrot_CBl4U2 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope3 --out=frgrot_RJNSim --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope4 --out=frgrot_FbrR0x --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope5 --out=frgrot_UASx6T --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope6 --out=frgrot_AzMjpi --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope7 --out=frgrot_cumN3A --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope8 --out=frgrot_Bw6evM --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope9 --out=frgrot_QCbJp8 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mask --out=frgrot_21CToy --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=nn


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat

/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=example_func --out=frgrot_j1HIMI --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mean_func --out=frgrot_5fIMPq --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope1 --out=frgrot_nS1c1X --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope10 --out=frgrot_Nck3Kl --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope2 --out=frgrot_B1RwbC --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope3 --out=frgrot_K9RNSQ --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope4 --out=frgrot_jPPf1a --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope5 --out=frgrot_HjXrUt --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope6 --out=frgrot_fK2jAQ --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope7 --out=frgrot_o4BrgY --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope8 --out=frgrot_mkNoOi --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope9 --out=frgrot_Z7sjbG --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope1 --out=frgrot_Jylaj2 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope10 --out=frgrot_Qfr3cd --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope2 --out=frgrot_HDewPv --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope3 --out=frgrot_bjLAeQ --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope4 --out=frgrot_h2Y320 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope5 --out=frgrot_VfxRNo --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope6 --out=frgrot_OyugGH --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope7 --out=frgrot_IynWm3 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope8 --out=frgrot_PlCLMe --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope9 --out=frgrot_jB4edB --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mask --out=frgrot_HjGlLX --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=nn


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat

/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=example_func --out=frgrot_GBxgme --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mean_func --out=frgrot_Kt0vNX --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope1 --out=frgrot_1hA4uu --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope10 --out=frgrot_I3eb5M --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope2 --out=frgrot_Jvchza --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope3 --out=frgrot_zEMtki --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope4 --out=frgrot_YfzSUC --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope5 --out=frgrot_1k58tZ --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope6 --out=frgrot_jkXd2j --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope7 --out=frgrot_QRvpOu --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope8 --out=frgrot_ihFVvN --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope9 --out=frgrot_j0LMG7 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope1 --out=frgrot_TpPp9l --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope10 --out=frgrot_wN4oNF --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope2 --out=frgrot_HdEv01 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope3 --out=frgrot_UGATvn --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope4 --out=frgrot_OZn1wz --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope5 --out=frgrot_tykHRU --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope6 --out=frgrot_FeeCtf --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope7 --out=frgrot_CeXXQC --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope8 --out=frgrot_zGRt1N --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope9 --out=frgrot_q3M0d6 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mask --out=frgrot_eoY7ct --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=nn


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat

/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=example_func --out=frgrot_LCrrjE --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mean_func --out=frgrot_kuCrym --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope1 --out=frgrot_lbV22V --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope10 --out=frgrot_x8ljpf --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope2 --out=frgrot_cwKTqx --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope3 --out=frgrot_fvGVFJ --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope4 --out=frgrot_Kvtqq5 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope5 --out=frgrot_3T5ZKs --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope6 --out=frgrot_JrhxfM --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope7 --out=frgrot_1CaUZT --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope8 --out=frgrot_42ukqi --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope9 --out=frgrot_OEX17z --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope1 --out=frgrot_HROzgN --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope10 --out=frgrot_k4GWg5 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope2 --out=frgrot_8y9Cgt --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope3 --out=frgrot_rXmNcP --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope4 --out=frgrot_p8Xy20 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope5 --out=frgrot_pF7rSi --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope6 --out=frgrot_MoV7VG --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope7 --out=frgrot_Ma2Ht3 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope8 --out=frgrot_hleTae --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope9 --out=frgrot_fx1HDw --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mask --out=frgrot_RhkfAU --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=nn


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat

/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=example_func --out=frgrot_eoWjV4 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mean_func --out=frgrot_yAfInT --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope1 --out=frgrot_tVtazp --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope10 --out=frgrot_8AEpAJ --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope2 --out=frgrot_0rmz56 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope3 --out=frgrot_pXUmMg --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope4 --out=frgrot_lFG29D --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope5 --out=frgrot_KcODb1 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope6 --out=frgrot_k0zpCe --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope7 --out=frgrot_jpdMTw --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope8 --out=frgrot_c70n6U --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope9 --out=frgrot_c5dlLc --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope1 --out=frgrot_UXumgs --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope10 --out=frgrot_i0hPEK --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope2 --out=frgrot_ci31T7 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope3 --out=frgrot_KXy9jj --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope4 --out=frgrot_jvPmBF --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope5 --out=frgrot_CMIdNY --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope6 --out=frgrot_37mFum --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope7 --out=frgrot_tcks4x --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope8 --out=frgrot_TBDJnQ --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope9 --out=frgrot_PnZcyc --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mask --out=frgrot_LBuBUp --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=nn


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat

/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=example_func --out=frgrot_QoAZAQ --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mean_func --out=frgrot_LZ5Thy --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope1 --out=frgrot_Bnlap5 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope10 --out=frgrot_3Ll2br --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope2 --out=frgrot_lGZ2fE --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope3 --out=frgrot_M6M4sY --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope4 --out=frgrot_CEVyGm --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope5 --out=frgrot_R8RzrF --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope6 --out=frgrot_I40iSQ --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope7 --out=frgrot_4ekyje --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope8 --out=frgrot_603kyw --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope9 --out=frgrot_38OokL --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope1 --out=frgrot_AKNpl5 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope10 --out=frgrot_wf4w8n --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope2 --out=frgrot_Kz8BSK --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope3 --out=frgrot_RFuYkT --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope4 --out=frgrot_PncSYf --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope5 --out=frgrot_9dRNdA --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope6 --out=frgrot_MIv2jK --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope7 --out=frgrot_DB7SB7 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope8 --out=frgrot_lSBFVq --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope9 --out=frgrot_vTDLbO --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mask --out=frgrot_CMBvrY --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=nn


/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg/standard bg_image

/usr/share/fsl/5.0/bin/fslmerge -t mask  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/mask

mkdir -p inputreg

/usr/share/fsl/5.0/bin/fslmaths ../mask -mul 8 -Tmean masksum -odt short

/usr/share/fsl/5.0/bin/fslmaths masksum -thr 8 -add masksum masksum

/usr/share/fsl/5.0/bin/overlay 0 0 -c ../bg_image -a masksum 0.9 16 masksum_overlay

/usr/share/fsl/5.0/bin/slicer masksum_overlay -S 2 750 masksum_overlay.png

/usr/share/fsl/5.0/bin/fslmaths masksum -mul 0 maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/mask -mul -1 -add 1 -mul 1 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/mask -mul -1 -add 1 -mul 2 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/mask -mul -1 -add 1 -mul 3 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/mask -mul -1 -add 1 -mul 4 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/mask -mul -1 -add 1 -mul 5 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/mask -mul -1 -add 1 -mul 6 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/mask -mul -1 -add 1 -mul 7 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/mask -mul -1 -add 1 -mul 8 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths masksum -thr 7 -uthr 7 -bin -mul maskunique maskunique

/usr/share/fsl/5.0/bin/overlay 0 0 ../bg_image -a maskunique 0.9 8 maskunique_overlay

/usr/share/fsl/5.0/bin/slicer maskunique_overlay -S 2 750 maskunique_overlay.png

/bin/cp /usr/share/fsl/5.0/etc/luts/ramp.gif .ramp.gif

/usr/share/fsl/5.0/bin/fslmaths mask -Tmin mask

/usr/share/fsl/5.0/bin/fslmerge -t mean_func  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/mean_func

/usr/share/fsl/5.0/bin/fslmaths mean_func -Tmean mean_func

/usr/share/fsl/5.0/bin/fslmerge -t cope1  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/cope1

/usr/share/fsl/5.0/bin/fslmaths cope1 -mas mask cope1

printf '0.056266605 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope1  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/varcope1

/usr/share/fsl/5.0/bin/fslmaths varcope1 -mas mask varcope1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/cope1 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/cope1 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/cope1 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/cope1 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/cope1 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/cope1 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/cope1 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/cope1 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t1  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths tdof_t1 -mas mask tdof_t1

/usr/share/fsl/5.0/bin/fslmerge -t cope2  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/cope2

/usr/share/fsl/5.0/bin/fslmaths cope2 -mas mask cope2

printf '0.038924725 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope2  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/varcope2

/usr/share/fsl/5.0/bin/fslmaths varcope2 -mas mask varcope2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/cope2 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/cope2 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/cope2 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/cope2 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/cope2 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/cope2 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/cope2 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/cope2 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t2  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths tdof_t2 -mas mask tdof_t2

/usr/share/fsl/5.0/bin/fslmerge -t cope3  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/cope3

/usr/share/fsl/5.0/bin/fslmaths cope3 -mas mask cope3

printf '0.0465939125 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope3  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/varcope3

/usr/share/fsl/5.0/bin/fslmaths varcope3 -mas mask varcope3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/cope3 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/cope3 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/cope3 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/cope3 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/cope3 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/cope3 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/cope3 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/cope3 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t3  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths tdof_t3 -mas mask tdof_t3

/usr/share/fsl/5.0/bin/fslmerge -t cope4  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/cope4

/usr/share/fsl/5.0/bin/fslmaths cope4 -mas mask cope4

printf '0.029288559999999998 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope4  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/varcope4

/usr/share/fsl/5.0/bin/fslmaths varcope4 -mas mask varcope4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/cope4 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/cope4 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/cope4 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/cope4 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/cope4 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/cope4 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/cope4 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/cope4 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t4  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths tdof_t4 -mas mask tdof_t4

/usr/share/fsl/5.0/bin/fslmerge -t cope5  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/cope5

/usr/share/fsl/5.0/bin/fslmaths cope5 -mas mask cope5

printf '0.039061374999999995 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope5  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/varcope5

/usr/share/fsl/5.0/bin/fslmaths varcope5 -mas mask varcope5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/cope5 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/cope5 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/cope5 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/cope5 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/cope5 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/cope5 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/cope5 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/cope5 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t5  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths tdof_t5 -mas mask tdof_t5

/usr/share/fsl/5.0/bin/fslmerge -t cope6  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/cope6

/usr/share/fsl/5.0/bin/fslmaths cope6 -mas mask cope6

printf '0.04760520000000001 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope6  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/varcope6

/usr/share/fsl/5.0/bin/fslmaths varcope6 -mas mask varcope6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/cope6 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/cope6 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/cope6 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/cope6 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/cope6 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/cope6 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/cope6 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/cope6 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t6  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths tdof_t6 -mas mask tdof_t6

/usr/share/fsl/5.0/bin/fslmerge -t cope7  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/cope7

/usr/share/fsl/5.0/bin/fslmaths cope7 -mas mask cope7

printf '0.0456137425 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope7  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/varcope7

/usr/share/fsl/5.0/bin/fslmaths varcope7 -mas mask varcope7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/cope7 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/cope7 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/cope7 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/cope7 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/cope7 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/cope7 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/cope7 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/cope7 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t7  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths tdof_t7 -mas mask tdof_t7

/usr/share/fsl/5.0/bin/fslmerge -t cope8  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/cope8

/usr/share/fsl/5.0/bin/fslmaths cope8 -mas mask cope8

printf '0.026646942499999996 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope8  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/varcope8

/usr/share/fsl/5.0/bin/fslmaths varcope8 -mas mask varcope8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/cope8 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/cope8 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/cope8 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/cope8 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/cope8 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/cope8 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/cope8 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/cope8 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t8  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths tdof_t8 -mas mask tdof_t8

/usr/share/fsl/5.0/bin/fslmerge -t cope9  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/cope9

/usr/share/fsl/5.0/bin/fslmaths cope9 -mas mask cope9

printf '0.026204179999999997 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope9  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/varcope9

/usr/share/fsl/5.0/bin/fslmaths varcope9 -mas mask varcope9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/cope9 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/cope9 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/cope9 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/cope9 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/cope9 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/cope9 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/cope9 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/cope9 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t9  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths tdof_t9 -mas mask tdof_t9

/usr/share/fsl/5.0/bin/fslmerge -t cope10  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/cope10

/usr/share/fsl/5.0/bin/fslmaths cope10 -mas mask cope10

printf '0.09050136125000001 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope10  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/varcope10

/usr/share/fsl/5.0/bin/fslmaths varcope10 -mas mask varcope10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/cope10 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/cope10 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/cope10 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/cope10 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/cope10 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/cope10 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/cope10 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/cope10 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t10  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths tdof_t10 -mas mask tdof_t10
</pre><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br></BODY></HTML>