report_log.html 13 KB

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  1. <HTML><HEAD>
  2. <!--refreshstart-->
  3. <!--refreshstop-->
  4. <link REL=stylesheet TYPE=text/css href=.files/fsl.css>
  5. <TITLE>FSL</TITLE></HEAD><BODY><OBJECT data=report.html></OBJECT>
  6. <h2>Progress Report / Log</h2>
  7. Started at Fri 13 Mar 2020 11:47:17 PM CET<p>
  8. Feat main script<br><pre>
  9. /bin/cp /data/project/studyforrest_ppa/sub-17/run-1_1st_movie-ppa-grp.fsf design.fsf
  10. /usr/share/fsl/5.0/bin/feat_model design
  11. mkdir .files;cp /usr/share/fsl/5.0/doc/fsl.css .files;cp -r /usr/share/fsl/5.0/doc/images .files/images
  12. /usr/share/fsl/5.0/bin/fsl_sub -T 10 -l logs -N feat0_init /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-grp.feat/design.fsf -D /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-grp.feat -I 1 -init
  13. 13265
  14. /usr/share/fsl/5.0/bin/fsl_sub -T 111 -l logs -N feat2_pre -j 13265 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-grp.feat/design.fsf -D /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-grp.feat -I 1 -prestats
  15. 15115
  16. /usr/share/fsl/5.0/bin/fsl_sub -T 206 -l logs -N feat3_film -j 15115 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-grp.feat/design.fsf -D /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-grp.feat -I 1 -stats
  17. 23276
  18. /usr/share/fsl/5.0/bin/fsl_sub -T 119 -l logs -N feat4_post -j 23276 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-grp.feat/design.fsf -D /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-grp.feat -poststats 0
  19. couldn't open "tmpreport_poststats.html": no such file or directory
  20. while executing
  21. "if { [ catch {
  22. for { set argindex 1 } { $argindex < $argc } { incr argindex 1 } {
  23. switch -- [ lindex $argv $argindex ] {
  24. -I {
  25. incr arginde..."
  26. (file "/usr/share/fsl/5.0/bin/feat" line 309)
  27. FATAL ERROR ENCOUNTERED:
  28. COMMAND:
  29. /usr/share/fsl/5.0/bin/fsl_sub -T 119 -l logs -N feat4_post -j 23276 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-grp.feat/design.fsf -D /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-grp.feat -poststats 0
  30. ERROR MESSAGE:
  31. child process exited abnormally
  32. END OF ERROR MESSAGE
  33. </pre><hr>Initialisation<br><pre>
  34. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/inputs/studyforrest-data-aligned/sub-17/in_bold3Tp2/sub-17_task-avmovie_run-1_bold prefiltered_func_data -odt float
  35. Total original volumes = 451
  36. /usr/share/fsl/5.0/bin/fslroi prefiltered_func_data example_func 225 1
  37. </pre><hr>Preprocessing:Stage 1<br><pre>
  38. </pre><hr>Preprocessing:Stage 2<br><pre>
  39. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data -Tmean mean_func
  40. /usr/share/fsl/5.0/bin/bet2 mean_func mask -f 0.3 -n -m; /usr/share/fsl/5.0/bin/immv mask_mask mask
  41. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data -mas mask prefiltered_func_data_bet
  42. /usr/share/fsl/5.0/bin/fslstats prefiltered_func_data_bet -p 2 -p 98
  43. 0.000000 417.000000
  44. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_bet -thr 41.7 -Tmin -bin mask -odt char
  45. /usr/share/fsl/5.0/bin/fslstats prefiltered_func_data -k mask -p 50
  46. 322.000000
  47. /usr/share/fsl/5.0/bin/fslmaths mask -dilF mask
  48. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data -mas mask prefiltered_func_data_thresh
  49. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_thresh -Tmean mean_func
  50. /usr/share/fsl/5.0/bin/susan prefiltered_func_data_thresh 241.5 1.6985138004246285 3 1 1 mean_func 241.5 prefiltered_func_data_smooth
  51. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_smooth -mas mask prefiltered_func_data_smooth
  52. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_smooth -mul 31.055900621118013 prefiltered_func_data_intnorm
  53. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_intnorm -Tmean tempMean
  54. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_intnorm -bptf 37.49998125000937 -1 -add tempMean prefiltered_func_data_tempfilt
  55. /usr/share/fsl/5.0/bin/imrm tempMean
  56. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_tempfilt filtered_func_data
  57. /usr/share/fsl/5.0/bin/fslmaths filtered_func_data -Tmean mean_func
  58. /bin/rm -rf prefiltered_func_data*
  59. </pre><hr>Stats<br><pre>
  60. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-17/onsets/avmovie/run-1/vse_new.txt custom_timing_files/ev1.txt
  61. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-17/onsets/avmovie/run-1/vse_old.txt custom_timing_files/ev2.txt
  62. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-17/onsets/avmovie/run-1/vlo_ch.txt custom_timing_files/ev3.txt
  63. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-17/onsets/avmovie/run-1/vpe_new.txt custom_timing_files/ev4.txt
  64. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-17/onsets/avmovie/run-1/vpe_old.txt custom_timing_files/ev5.txt
  65. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-17/onsets/avmovie/run-1/vno_cut.txt custom_timing_files/ev6.txt
  66. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-17/onsets/aomovie/run-1/se_new.txt custom_timing_files/ev7.txt
  67. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-17/onsets/aomovie/run-1/se_old.txt custom_timing_files/ev8.txt
  68. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-17/onsets/avmovie/run-1/fg_av_ger_lr.txt custom_timing_files/ev9.txt
  69. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-17/onsets/avmovie/run-1/fg_av_ger_lrdiff.txt custom_timing_files/ev10.txt
  70. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-17/onsets/avmovie/run-1/fg_av_ger_ml.txt custom_timing_files/ev11.txt
  71. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-17/onsets/avmovie/run-1/fg_av_ger_pd.txt custom_timing_files/ev12.txt
  72. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-17/onsets/avmovie/run-1/fg_av_ger_rms.txt custom_timing_files/ev13.txt
  73. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-17/onsets/avmovie/run-1/fg_av_ger_ud.txt custom_timing_files/ev14.txt
  74. paste -d ' ' /data/project/studyforrest_ppa/inputs/studyforrest-data-aligned/sub-17/in_bold3Tp2/sub-17_task-avmovie_run-1_bold_mcparams.txt > confoundevs.txt
  75. /usr/share/fsl/5.0/bin/feat_model design confoundevs.txt
  76. /usr/share/fsl/5.0/bin/film_gls --in=filtered_func_data --rn=stats --pd=design.mat --thr=1000.0 --sa --ms=5 --con=design.con
  77. Log directory is: stats
  78. paradigm.getDesignMatrix().Nrows()=451
  79. paradigm.getDesignMatrix().Ncols()=34
  80. sizeTS=451
  81. numTS=85669
  82. Calculating residuals...
  83. Completed
  84. Estimating residual autocorrelation...
  85. Calculating raw AutoCorrs... Completed
  86. mode = 10091.8
  87. sig = 1073
  88. Spatially smoothing auto corr estimates
  89. ....................
  90. Completed
  91. Tukey M = 21
  92. Tukey estimates... Completed
  93. Completed
  94. Prewhitening and Computing PEs...
  95. Percentage done:
  96. 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,Completed
  97. Saving results...
  98. Completed
  99. /usr/share/fsl/5.0/bin/smoothest -d 417 -m mask -r stats/res4d > stats/smoothness
  100. </pre><hr>Post-stats<br><pre>
  101. /usr/share/fsl/5.0/bin/fslmaths stats/zstat1 -mas mask thresh_zstat1
  102. echo 85669 > thresh_zstat1.vol
  103. zstat1: DLH=0.249593 VOLUME=85669 RESELS=18.508
  104. /usr/share/fsl/5.0/bin/fslmaths stats/zstat2 -mas mask thresh_zstat2
  105. echo 85669 > thresh_zstat2.vol
  106. zstat2: DLH=0.249593 VOLUME=85669 RESELS=18.508
  107. /usr/share/fsl/5.0/bin/fslmaths stats/zstat3 -mas mask thresh_zstat3
  108. echo 85669 > thresh_zstat3.vol
  109. zstat3: DLH=0.249593 VOLUME=85669 RESELS=18.508
  110. /usr/share/fsl/5.0/bin/fslmaths stats/zstat4 -mas mask thresh_zstat4
  111. echo 85669 > thresh_zstat4.vol
  112. zstat4: DLH=0.249593 VOLUME=85669 RESELS=18.508
  113. /usr/share/fsl/5.0/bin/fslmaths stats/zstat5 -mas mask thresh_zstat5
  114. echo 85669 > thresh_zstat5.vol
  115. zstat5: DLH=0.249593 VOLUME=85669 RESELS=18.508
  116. /usr/share/fsl/5.0/bin/fslmaths stats/zstat6 -mas mask thresh_zstat6
  117. echo 85669 > thresh_zstat6.vol
  118. zstat6: DLH=0.249593 VOLUME=85669 RESELS=18.508
  119. /usr/share/fsl/5.0/bin/fslmaths stats/zstat7 -mas mask thresh_zstat7
  120. echo 85669 > thresh_zstat7.vol
  121. zstat7: DLH=0.249593 VOLUME=85669 RESELS=18.508
  122. /usr/share/fsl/5.0/bin/fslmaths stats/zstat8 -mas mask thresh_zstat8
  123. echo 85669 > thresh_zstat8.vol
  124. zstat8: DLH=0.249593 VOLUME=85669 RESELS=18.508
  125. /usr/share/fsl/5.0/bin/fslmaths stats/zstat9 -mas mask thresh_zstat9
  126. echo 85669 > thresh_zstat9.vol
  127. zstat9: DLH=0.249593 VOLUME=85669 RESELS=18.508
  128. /usr/share/fsl/5.0/bin/fslmaths stats/zstat10 -mas mask thresh_zstat10
  129. echo 85669 > thresh_zstat10.vol
  130. zstat10: DLH=0.249593 VOLUME=85669 RESELS=18.508
  131. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat1 -c stats/cope1 -t 3.4 -p 0.05 -d 0.249593 --volume=85669 --othresh=thresh_zstat1 -o cluster_mask_zstat1 --connectivity=26 --olmax=lmax_zstat1.txt --scalarname=Z > cluster_zstat1.txt
  132. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat1
  133. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat2 -c stats/cope2 -t 3.4 -p 0.05 -d 0.249593 --volume=85669 --othresh=thresh_zstat2 -o cluster_mask_zstat2 --connectivity=26 --olmax=lmax_zstat2.txt --scalarname=Z > cluster_zstat2.txt
  134. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat2
  135. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat3 -c stats/cope3 -t 3.4 -p 0.05 -d 0.249593 --volume=85669 --othresh=thresh_zstat3 -o cluster_mask_zstat3 --connectivity=26 --olmax=lmax_zstat3.txt --scalarname=Z > cluster_zstat3.txt
  136. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat3
  137. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat4 -c stats/cope4 -t 3.4 -p 0.05 -d 0.249593 --volume=85669 --othresh=thresh_zstat4 -o cluster_mask_zstat4 --connectivity=26 --olmax=lmax_zstat4.txt --scalarname=Z > cluster_zstat4.txt
  138. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat4
  139. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat5 -c stats/cope5 -t 3.4 -p 0.05 -d 0.249593 --volume=85669 --othresh=thresh_zstat5 -o cluster_mask_zstat5 --connectivity=26 --olmax=lmax_zstat5.txt --scalarname=Z > cluster_zstat5.txt
  140. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat5
  141. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat6 -c stats/cope6 -t 3.4 -p 0.05 -d 0.249593 --volume=85669 --othresh=thresh_zstat6 -o cluster_mask_zstat6 --connectivity=26 --olmax=lmax_zstat6.txt --scalarname=Z > cluster_zstat6.txt
  142. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat6
  143. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat7 -c stats/cope7 -t 3.4 -p 0.05 -d 0.249593 --volume=85669 --othresh=thresh_zstat7 -o cluster_mask_zstat7 --connectivity=26 --olmax=lmax_zstat7.txt --scalarname=Z > cluster_zstat7.txt
  144. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat7
  145. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat8 -c stats/cope8 -t 3.4 -p 0.05 -d 0.249593 --volume=85669 --othresh=thresh_zstat8 -o cluster_mask_zstat8 --connectivity=26 --olmax=lmax_zstat8.txt --scalarname=Z > cluster_zstat8.txt
  146. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat8
  147. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat9 -c stats/cope9 -t 3.4 -p 0.05 -d 0.249593 --volume=85669 --othresh=thresh_zstat9 -o cluster_mask_zstat9 --connectivity=26 --olmax=lmax_zstat9.txt --scalarname=Z > cluster_zstat9.txt
  148. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat9
  149. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat10 -c stats/cope10 -t 3.4 -p 0.05 -d 0.249593 --volume=85669 --othresh=thresh_zstat10 -o cluster_mask_zstat10 --connectivity=26 --olmax=lmax_zstat10.txt --scalarname=Z > cluster_zstat10.txt
  150. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat10
  151. /usr/share/fsl/5.0/bin/fslstats thresh_zstat1 -l 0.0001 -R 2>/dev/null
  152. 3.404256 5.087826
  153. /usr/share/fsl/5.0/bin/fslstats thresh_zstat2 -l 0.0001 -R 2>/dev/null
  154. 0.000000 0.000000
  155. /usr/share/fsl/5.0/bin/fslstats thresh_zstat3 -l 0.0001 -R 2>/dev/null
  156. 0.000000 0.000000
  157. /usr/share/fsl/5.0/bin/fslstats thresh_zstat4 -l 0.0001 -R 2>/dev/null
  158. 0.000000 0.000000
  159. /usr/share/fsl/5.0/bin/fslstats thresh_zstat5 -l 0.0001 -R 2>/dev/null
  160. 3.409079 4.709275
  161. /usr/share/fsl/5.0/bin/fslstats thresh_zstat6 -l 0.0001 -R 2>/dev/null
  162. 3.422384 4.553940
  163. /usr/share/fsl/5.0/bin/fslstats thresh_zstat7 -l 0.0001 -R 2>/dev/null
  164. 0.000000 0.000000
  165. /usr/share/fsl/5.0/bin/fslstats thresh_zstat8 -l 0.0001 -R 2>/dev/null
  166. 0.000000 0.000000
  167. /usr/share/fsl/5.0/bin/fslstats thresh_zstat9 -l 0.0001 -R 2>/dev/null
  168. 3.400136 4.366525
  169. /usr/share/fsl/5.0/bin/fslstats thresh_zstat10 -l 0.0001 -R 2>/dev/null
  170. 0.000000 0.000000
  171. Rendering using zmin=3.400136 zmax=5.087826
  172. couldn't open "tmpreport_poststats.html": no such file or directory
  173. while executing
  174. "if { [ catch {
  175. for { set argindex 1 } { $argindex < $argc } { incr argindex 1 } {
  176. switch -- [ lindex $argv $argindex ] {
  177. -I {
  178. incr arginde..."
  179. (file "/usr/share/fsl/5.0/bin/feat" line 309)
  180. Error encountered while running in main feat script, halting.
  181. couldn't open "tmpreport_poststats.html": no such file or directory
  182. </pre><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br></BODY></HTML>