chaeusler
/
studyforrest-ppa-analysis


			
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<TITLE>FSL</TITLE></HEAD><BODY><OBJECT data=report.html></OBJECT>
<h2>Progress Report / Log</h2>
Started at Thu 19 Mar 2020 06:58:04 AM CET<p>
Feat main script<br><pre>

/bin/cp /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.fsf design.fsf

/usr/share/fsl/5.0/bin/feat_model design

mkdir .files;cp /usr/share/fsl/5.0/doc/fsl.css .files;cp -r /usr/share/fsl/5.0/doc/images .files/images

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat2_pre   /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat -gfeatprep
4274

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 4274  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope1.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope1.feat -I 1 -flame1
13103

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 13103 -t ./.flame
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 14451  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope1.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope1.feat -flame3
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 17689  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope1.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope1.feat -poststats 1
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/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 18237  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope1.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope1.feat -stop
24032

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 4274  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope2.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope2.feat -I 2 -flame1
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 27145 -t ./.flame
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 28605  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope2.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope2.feat -flame3
388

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 388  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope2.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope2.feat -poststats 1
1088

/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 1088  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope2.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope2.feat -stop
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 4274  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope3.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope3.feat -I 3 -flame1
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 9401 -t ./.flame
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 10889  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope3.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope3.feat -flame3
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 15606  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope3.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope3.feat -poststats 1
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/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 16578  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope3.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope3.feat -stop
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 4274  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope4.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope4.feat -I 4 -flame1
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 24485 -t ./.flame
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 25787  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope4.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope4.feat -flame3
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 31264  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope4.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope4.feat -poststats 1
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/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 32393  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope4.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope4.feat -stop
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 4274  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope5.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope5.feat -I 5 -flame1
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 7233 -t ./.flame
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 8426  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope5.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope5.feat -flame3
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 14312  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope5.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope5.feat -poststats 1
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/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 15751  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope5.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope5.feat -stop
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 4274  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope6.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope6.feat -I 6 -flame1
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 22341 -t ./.flame
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 23605  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope6.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope6.feat -flame3
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 30019  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope6.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope6.feat -poststats 1
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/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 31265  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope6.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope6.feat -stop
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 4274  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope7.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope7.feat -I 7 -flame1
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 5275 -t ./.flame
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 6824  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope7.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope7.feat -flame3
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 13525  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope7.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope7.feat -poststats 1
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/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 14929  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope7.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope7.feat -stop
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 4274  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope8.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope8.feat -I 8 -flame1
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 20798 -t ./.flame
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 22550  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope8.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope8.feat -flame3
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 29906  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope8.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope8.feat -poststats 1
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/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 30374  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope8.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope8.feat -stop
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 4274  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope9.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope9.feat -I 9 -flame1
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 4022 -t ./.flame
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 5522  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope9.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope9.feat -flame3
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 12402  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope9.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope9.feat -poststats 1
12946

/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 12946  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope9.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope9.feat -stop
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 4274  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat -I 10 -flame1
19214

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 19214 -t ./.flame
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 20864  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat -flame3
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 26200  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat -poststats 1
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/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 26674  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat -stop
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/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 24032,6759,22475,5670,20929,3747,19012,2139,17408,30259  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/2nd-lvl_movie-ppa-ind.gfeat -stop
</pre><hr>Higher-level input files preparation<br><pre>

/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_4I8LfU -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_2Bj8mc -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_fKdFWC -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_ypayYR -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_L5Yi9V -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_wxnFTb -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_sbXS8l -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_KGUsjz -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_l59enP -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_jFqnr0 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_DvFYL4 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_1wkmDk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_0DWUEw -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_sWLDNK -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_rPvkXZ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_JRBfM0 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_CKpmEg -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_aZFUVr -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_R5hG3H -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_qxOOtT -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_wyA3g8 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_r9pcuc -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_ebaRzr -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_ORvbZF -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_0K7RE6 -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_ukRbUp -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_LRbe2B -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_n6jx3R -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_BoHcx2 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_dl2oji -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_bcGuvl -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_NNpimB -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_jxn0aQ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_lnRP54 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_TjzlYg -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_8aWeRn -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_NE6DIA -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_5yA0gM -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_nkFQkY -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_GgZ0Zd -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_ySEUep -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_57wd2s -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_ccwDUI -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_ThKjrU -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_Dqdmq6 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_f3zybl -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_R3DuNs -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_cZcwQX -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_QDKHus -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_IdCliw -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_xWKIwM -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_ZlszHW -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_fYh0Gc -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_FBJVAr -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_fHV2vw -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_EfAWnL -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_PGcoYV -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_01JoTb -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_v8FMBn -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_z5ITBD -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_zMCdoH -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_klEHHS -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_NpBYs8 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_BJHcBj -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_pGTCUy -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_cejVEF -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_SKJUdV -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_soRuy6 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_VJTILk -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_Fti39z -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_lYWqSZ -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_nWEnsx -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_1aWaSH -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_Yv5a2L -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_kgo04Y -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_7RYc4g -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_nh8j8p -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_YiG0jF -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_03t3tS -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_qvwqOV -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_cUOlv7 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_vBzLnk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_BYnWpw -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_gvOG0L -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_BVzNPY -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_YAtoY0 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_BNgI4d -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_ToXSet -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_eO2CnF -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_LWdbKR -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_Z9OsGW -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_M4NNYa -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_u2M43p -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_1YEl3N -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_5cXFja -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_zRwl3o -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_GqFxRD -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_a6bYvP -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_VzUSX4 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_m3tNE8 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_rDG9Nk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_dLrWYy -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_tUYNqO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_HxoTOZ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_Ts8jXf -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_V0SS4g -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_85W4Zu -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_pfgveI -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_r6b9nX -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_BAEQQ8 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_kfrcTa -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_oC7pMo -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_CHsefC -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_jrLn6N -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_18kUR2 -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_tgONvl -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_ol6D3C -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_Mgbdg4 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_d3a21g -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_JSJh0k -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_SqIfdA -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_XQYY4M -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_ScDKIX -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_XpW7vd -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_TgRErq -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_c3qBZt -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_8fKPpF -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_XR26YR -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_Ej00o7 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_qg39Yj -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_EoWo4v -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_4Uobcx -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_LPDyMM -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_9apgJY -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_s4sqMa -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_d93XUo -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_DWWI8t -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_NDuBUF -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_KtkzlY -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_WzmJir -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_AGzSOK -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_gioWtX -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_Nhb2ab -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_hDDcAn -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_lstAzB -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_7to0PF -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_otTsIR -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_KiXHW7 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_hBzxWk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_rPwVyv -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_qDfGCL -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_vWgNRP -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_vXZY54 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_WKlEmf -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_HQVOou -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_ryhGTK -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_zYHzXM -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_RlACW3 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_H8Fxbg -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_KCC9is -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_BiSNyF -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_GHgEQN -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_hjZPIj -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_IpoAiP -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_IYpxeU -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_SeTzU4 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_OKjHAh -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_qyjchx -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_IA5buI -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_Ze772X -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_9G2Et5 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_zpgWyh -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_PETOFs -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_LbcEPH -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_EKGw3W -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_6JbkO0 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_wTxF8b -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_WImMQs -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_tsDXdE -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_72zMwR -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_PtCG31 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_N7ykN7 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_WQAspi -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_RKNMEB -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg/standard bg_image

/usr/share/fsl/5.0/bin/fslmerge -t mask  /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/mask

mkdir -p inputreg

/usr/share/fsl/5.0/bin/fslmaths ../mask -mul 8 -Tmean masksum -odt short

/usr/share/fsl/5.0/bin/fslmaths masksum -thr 8 -add masksum masksum

/usr/share/fsl/5.0/bin/overlay 0 0 -c ../bg_image -a masksum 0.9 16 masksum_overlay

/usr/share/fsl/5.0/bin/slicer masksum_overlay -S 2 750 masksum_overlay.png

/usr/share/fsl/5.0/bin/fslmaths masksum -mul 0 maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 1 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 2 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 3 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 4 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 5 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 6 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 7 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 8 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths masksum -thr 7 -uthr 7 -bin -mul maskunique maskunique

/usr/share/fsl/5.0/bin/overlay 0 0 ../bg_image -a maskunique 0.9 8 maskunique_overlay

/usr/share/fsl/5.0/bin/slicer maskunique_overlay -S 2 750 maskunique_overlay.png

/bin/cp /usr/share/fsl/5.0/etc/luts/ramp.gif .ramp.gif

/usr/share/fsl/5.0/bin/fslmaths mask -Tmin mask

/usr/share/fsl/5.0/bin/fslmerge -t mean_func  /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/mean_func

/usr/share/fsl/5.0/bin/fslmaths mean_func -Tmean mean_func

/usr/share/fsl/5.0/bin/fslmerge -t cope1  /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/cope1

/usr/share/fsl/5.0/bin/fslmaths cope1 -mas mask cope1

printf '0.05552052875 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope1  /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope1

/usr/share/fsl/5.0/bin/fslmaths varcope1 -mas mask varcope1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t1  /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths tdof_t1 -mas mask tdof_t1

/usr/share/fsl/5.0/bin/fslmerge -t cope2  /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/cope2

/usr/share/fsl/5.0/bin/fslmaths cope2 -mas mask cope2

printf '0.03863744375 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope2  /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope2

/usr/share/fsl/5.0/bin/fslmaths varcope2 -mas mask varcope2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t2  /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths tdof_t2 -mas mask tdof_t2

/usr/share/fsl/5.0/bin/fslmerge -t cope3  /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/cope3

/usr/share/fsl/5.0/bin/fslmaths cope3 -mas mask cope3

printf '0.04671621125 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope3  /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope3

/usr/share/fsl/5.0/bin/fslmaths varcope3 -mas mask varcope3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t3  /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths tdof_t3 -mas mask tdof_t3

/usr/share/fsl/5.0/bin/fslmerge -t cope4  /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/cope4

/usr/share/fsl/5.0/bin/fslmaths cope4 -mas mask cope4

printf '0.029334390000000002 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope4  /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope4

/usr/share/fsl/5.0/bin/fslmaths varcope4 -mas mask varcope4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t4  /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths tdof_t4 -mas mask tdof_t4

/usr/share/fsl/5.0/bin/fslmerge -t cope5  /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/cope5

/usr/share/fsl/5.0/bin/fslmaths cope5 -mas mask cope5

printf '0.03892309 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope5  /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope5

/usr/share/fsl/5.0/bin/fslmaths varcope5 -mas mask varcope5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t5  /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths tdof_t5 -mas mask tdof_t5

/usr/share/fsl/5.0/bin/fslmerge -t cope6  /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/cope6

/usr/share/fsl/5.0/bin/fslmaths cope6 -mas mask cope6

printf '0.046981808750000006 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope6  /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope6

/usr/share/fsl/5.0/bin/fslmaths varcope6 -mas mask varcope6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t6  /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths tdof_t6 -mas mask tdof_t6

/usr/share/fsl/5.0/bin/fslmerge -t cope7  /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/cope7

/usr/share/fsl/5.0/bin/fslmaths cope7 -mas mask cope7

printf '0.044660495 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope7  /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope7

/usr/share/fsl/5.0/bin/fslmaths varcope7 -mas mask varcope7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t7  /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths tdof_t7 -mas mask tdof_t7

/usr/share/fsl/5.0/bin/fslmerge -t cope8  /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/cope8

/usr/share/fsl/5.0/bin/fslmaths cope8 -mas mask cope8

printf '0.026045190000000003 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope8  /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope8

/usr/share/fsl/5.0/bin/fslmaths varcope8 -mas mask varcope8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t8  /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths tdof_t8 -mas mask tdof_t8

/usr/share/fsl/5.0/bin/fslmerge -t cope9  /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/cope9

/usr/share/fsl/5.0/bin/fslmaths cope9 -mas mask cope9

printf '0.02668693625 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope9  /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope9

/usr/share/fsl/5.0/bin/fslmaths varcope9 -mas mask varcope9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t9  /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths tdof_t9 -mas mask tdof_t9

/usr/share/fsl/5.0/bin/fslmerge -t cope10  /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/cope10

/usr/share/fsl/5.0/bin/fslmaths cope10 -mas mask cope10

printf '0.09089820250000001 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope10  /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope10

/usr/share/fsl/5.0/bin/fslmaths varcope10 -mas mask varcope10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t10  /data/project/studyforrest_ppa/sub-15/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-15/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-15/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-15/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-15/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-15/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-15/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-15/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths tdof_t10 -mas mask tdof_t10
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