feat4_post 9.5 KB

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  1. </pre><hr>Post-stats<br><pre>
  2. /usr/share/fsl/5.0/bin/fslmaths stats/zstat1 -mas mask thresh_zstat1
  3. echo 77097 > thresh_zstat1.vol
  4. zstat1: DLH=0.249707 VOLUME=77097 RESELS=18.5042
  5. /usr/share/fsl/5.0/bin/fslmaths stats/zstat2 -mas mask thresh_zstat2
  6. echo 77097 > thresh_zstat2.vol
  7. zstat2: DLH=0.249707 VOLUME=77097 RESELS=18.5042
  8. /usr/share/fsl/5.0/bin/fslmaths stats/zstat3 -mas mask thresh_zstat3
  9. echo 77097 > thresh_zstat3.vol
  10. zstat3: DLH=0.249707 VOLUME=77097 RESELS=18.5042
  11. /usr/share/fsl/5.0/bin/fslmaths stats/zstat4 -mas mask thresh_zstat4
  12. echo 77097 > thresh_zstat4.vol
  13. zstat4: DLH=0.249707 VOLUME=77097 RESELS=18.5042
  14. /usr/share/fsl/5.0/bin/fslmaths stats/zstat5 -mas mask thresh_zstat5
  15. echo 77097 > thresh_zstat5.vol
  16. zstat5: DLH=0.249707 VOLUME=77097 RESELS=18.5042
  17. /usr/share/fsl/5.0/bin/fslmaths stats/zstat6 -mas mask thresh_zstat6
  18. echo 77097 > thresh_zstat6.vol
  19. zstat6: DLH=0.249707 VOLUME=77097 RESELS=18.5042
  20. /usr/share/fsl/5.0/bin/fslmaths stats/zstat7 -mas mask thresh_zstat7
  21. echo 77097 > thresh_zstat7.vol
  22. zstat7: DLH=0.249707 VOLUME=77097 RESELS=18.5042
  23. /usr/share/fsl/5.0/bin/fslmaths stats/zstat8 -mas mask thresh_zstat8
  24. echo 77097 > thresh_zstat8.vol
  25. zstat8: DLH=0.249707 VOLUME=77097 RESELS=18.5042
  26. /usr/share/fsl/5.0/bin/fslmaths stats/zstat9 -mas mask thresh_zstat9
  27. echo 77097 > thresh_zstat9.vol
  28. zstat9: DLH=0.249707 VOLUME=77097 RESELS=18.5042
  29. /usr/share/fsl/5.0/bin/fslmaths stats/zstat10 -mas mask thresh_zstat10
  30. echo 77097 > thresh_zstat10.vol
  31. zstat10: DLH=0.249707 VOLUME=77097 RESELS=18.5042
  32. /usr/share/fsl/5.0/bin/fslmaths stats/zstat11 -mas mask thresh_zstat11
  33. echo 77097 > thresh_zstat11.vol
  34. zstat11: DLH=0.249707 VOLUME=77097 RESELS=18.5042
  35. /usr/share/fsl/5.0/bin/fslmaths stats/zstat12 -mas mask thresh_zstat12
  36. echo 77097 > thresh_zstat12.vol
  37. zstat12: DLH=0.249707 VOLUME=77097 RESELS=18.5042
  38. /usr/share/fsl/5.0/bin/fslmaths stats/zstat13 -mas mask thresh_zstat13
  39. echo 77097 > thresh_zstat13.vol
  40. zstat13: DLH=0.249707 VOLUME=77097 RESELS=18.5042
  41. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat1 -c stats/cope1 -t 3.4 -p 0.05 -d 0.249707 --volume=77097 --othresh=thresh_zstat1 -o cluster_mask_zstat1 --connectivity=26 --olmax=lmax_zstat1.txt --scalarname=Z > cluster_zstat1.txt
  42. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat1
  43. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat2 -c stats/cope2 -t 3.4 -p 0.05 -d 0.249707 --volume=77097 --othresh=thresh_zstat2 -o cluster_mask_zstat2 --connectivity=26 --olmax=lmax_zstat2.txt --scalarname=Z > cluster_zstat2.txt
  44. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat2
  45. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat3 -c stats/cope3 -t 3.4 -p 0.05 -d 0.249707 --volume=77097 --othresh=thresh_zstat3 -o cluster_mask_zstat3 --connectivity=26 --olmax=lmax_zstat3.txt --scalarname=Z > cluster_zstat3.txt
  46. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat3
  47. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat4 -c stats/cope4 -t 3.4 -p 0.05 -d 0.249707 --volume=77097 --othresh=thresh_zstat4 -o cluster_mask_zstat4 --connectivity=26 --olmax=lmax_zstat4.txt --scalarname=Z > cluster_zstat4.txt
  48. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat4
  49. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat5 -c stats/cope5 -t 3.4 -p 0.05 -d 0.249707 --volume=77097 --othresh=thresh_zstat5 -o cluster_mask_zstat5 --connectivity=26 --olmax=lmax_zstat5.txt --scalarname=Z > cluster_zstat5.txt
  50. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat5
  51. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat6 -c stats/cope6 -t 3.4 -p 0.05 -d 0.249707 --volume=77097 --othresh=thresh_zstat6 -o cluster_mask_zstat6 --connectivity=26 --olmax=lmax_zstat6.txt --scalarname=Z > cluster_zstat6.txt
  52. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat6
  53. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat7 -c stats/cope7 -t 3.4 -p 0.05 -d 0.249707 --volume=77097 --othresh=thresh_zstat7 -o cluster_mask_zstat7 --connectivity=26 --olmax=lmax_zstat7.txt --scalarname=Z > cluster_zstat7.txt
  54. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat7
  55. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat8 -c stats/cope8 -t 3.4 -p 0.05 -d 0.249707 --volume=77097 --othresh=thresh_zstat8 -o cluster_mask_zstat8 --connectivity=26 --olmax=lmax_zstat8.txt --scalarname=Z > cluster_zstat8.txt
  56. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat8
  57. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat9 -c stats/cope9 -t 3.4 -p 0.05 -d 0.249707 --volume=77097 --othresh=thresh_zstat9 -o cluster_mask_zstat9 --connectivity=26 --olmax=lmax_zstat9.txt --scalarname=Z > cluster_zstat9.txt
  58. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat9
  59. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat10 -c stats/cope10 -t 3.4 -p 0.05 -d 0.249707 --volume=77097 --othresh=thresh_zstat10 -o cluster_mask_zstat10 --connectivity=26 --olmax=lmax_zstat10.txt --scalarname=Z > cluster_zstat10.txt
  60. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat10
  61. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat11 -c stats/cope11 -t 3.4 -p 0.05 -d 0.249707 --volume=77097 --othresh=thresh_zstat11 -o cluster_mask_zstat11 --connectivity=26 --olmax=lmax_zstat11.txt --scalarname=Z > cluster_zstat11.txt
  62. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat11
  63. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat12 -c stats/cope12 -t 3.4 -p 0.05 -d 0.249707 --volume=77097 --othresh=thresh_zstat12 -o cluster_mask_zstat12 --connectivity=26 --olmax=lmax_zstat12.txt --scalarname=Z > cluster_zstat12.txt
  64. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat12
  65. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat13 -c stats/cope13 -t 3.4 -p 0.05 -d 0.249707 --volume=77097 --othresh=thresh_zstat13 -o cluster_mask_zstat13 --connectivity=26 --olmax=lmax_zstat13.txt --scalarname=Z > cluster_zstat13.txt
  66. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat13
  67. /usr/share/fsl/5.0/bin/fslstats thresh_zstat1 -l 0.0001 -R 2>/dev/null
  68. 3.401202 5.552500
  69. /usr/share/fsl/5.0/bin/fslstats thresh_zstat2 -l 0.0001 -R 2>/dev/null
  70. 3.400047 4.953343
  71. /usr/share/fsl/5.0/bin/fslstats thresh_zstat3 -l 0.0001 -R 2>/dev/null
  72. 3.415952 4.684284
  73. /usr/share/fsl/5.0/bin/fslstats thresh_zstat4 -l 0.0001 -R 2>/dev/null
  74. 3.419975 4.079880
  75. /usr/share/fsl/5.0/bin/fslstats thresh_zstat5 -l 0.0001 -R 2>/dev/null
  76. 3.404266 5.241350
  77. /usr/share/fsl/5.0/bin/fslstats thresh_zstat6 -l 0.0001 -R 2>/dev/null
  78. 3.401946 4.706105
  79. /usr/share/fsl/5.0/bin/fslstats thresh_zstat7 -l 0.0001 -R 2>/dev/null
  80. 3.400267 4.160002
  81. /usr/share/fsl/5.0/bin/fslstats thresh_zstat8 -l 0.0001 -R 2>/dev/null
  82. 3.402757 4.575407
  83. /usr/share/fsl/5.0/bin/fslstats thresh_zstat9 -l 0.0001 -R 2>/dev/null
  84. 0.000000 0.000000
  85. /usr/share/fsl/5.0/bin/fslstats thresh_zstat10 -l 0.0001 -R 2>/dev/null
  86. 0.000000 0.000000
  87. /usr/share/fsl/5.0/bin/fslstats thresh_zstat11 -l 0.0001 -R 2>/dev/null
  88. 0.000000 0.000000
  89. /usr/share/fsl/5.0/bin/fslstats thresh_zstat12 -l 0.0001 -R 2>/dev/null
  90. 0.000000 0.000000
  91. /usr/share/fsl/5.0/bin/fslstats thresh_zstat13 -l 0.0001 -R 2>/dev/null
  92. 3.426798 4.606171
  93. Rendering using zmin=3.400047 zmax=5.552500
  94. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat1 3.400047 5.552500 rendered_thresh_zstat1
  95. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat1 -A 750 rendered_thresh_zstat1.png
  96. /bin/cp /usr/share/fsl/5.0/etc/luts/ramp.gif .ramp.gif
  97. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat2 3.400047 5.552500 rendered_thresh_zstat2
  98. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat2 -A 750 rendered_thresh_zstat2.png
  99. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat3 3.400047 5.552500 rendered_thresh_zstat3
  100. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat3 -A 750 rendered_thresh_zstat3.png
  101. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat4 3.400047 5.552500 rendered_thresh_zstat4
  102. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat4 -A 750 rendered_thresh_zstat4.png
  103. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat5 3.400047 5.552500 rendered_thresh_zstat5
  104. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat5 -A 750 rendered_thresh_zstat5.png
  105. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat6 3.400047 5.552500 rendered_thresh_zstat6
  106. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat6 -A 750 rendered_thresh_zstat6.png
  107. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat7 3.400047 5.552500 rendered_thresh_zstat7
  108. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat7 -A 750 rendered_thresh_zstat7.png
  109. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat8 3.400047 5.552500 rendered_thresh_zstat8
  110. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat8 -A 750 rendered_thresh_zstat8.png
  111. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat9 3.400047 5.552500 rendered_thresh_zstat9
  112. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat9 -A 750 rendered_thresh_zstat9.png
  113. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat10 3.400047 5.552500 rendered_thresh_zstat10
  114. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat10 -A 750 rendered_thresh_zstat10.png
  115. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat11 3.400047 5.552500 rendered_thresh_zstat11
  116. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat11 -A 750 rendered_thresh_zstat11.png
  117. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat12 3.400047 5.552500 rendered_thresh_zstat12
  118. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat12 -A 750 rendered_thresh_zstat12.png
  119. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat13 3.400047 5.552500 rendered_thresh_zstat13
  120. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat13 -A 750 rendered_thresh_zstat13.png
  121. mkdir -p tsplot ; /usr/share/fsl/5.0/bin/tsplot . -f filtered_func_data -o tsplot