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chaeusler
/
studyforrest-ppa-analysis
DOI
10.12751/g-node.7is9s6
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studyforrest...
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sub-06
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run-2_movie-ppa-ind.feat
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feat2_pre

feat2_pre 1.6 KB
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  1. </pre><hr>Preprocessing:Stage 1<br><pre>
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  2. </pre><hr>Preprocessing:Stage 2<br><pre>
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  4. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data -Tmean mean_func
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  6. /usr/share/fsl/5.0/bin/bet2 mean_func mask -f 0.3 -n -m; /usr/share/fsl/5.0/bin/immv mask_mask mask
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  8. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data -mas mask prefiltered_func_data_bet
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  10. /usr/share/fsl/5.0/bin/fslstats prefiltered_func_data_bet -p 2 -p 98
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  11. 0.000000 458.000000 
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  13. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_bet -thr 45.8 -Tmin -bin mask -odt char
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  15. /usr/share/fsl/5.0/bin/fslstats prefiltered_func_data -k mask -p 50
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  16. 346.000000 
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  18. /usr/share/fsl/5.0/bin/fslmaths mask -dilF mask
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  20. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data -mas mask prefiltered_func_data_thresh
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  22. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_thresh -Tmean mean_func
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  24. /usr/share/fsl/5.0/bin/susan prefiltered_func_data_thresh 259.5 1.6985138004246285 3 1 1 mean_func 259.5 prefiltered_func_data_smooth
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  26. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_smooth -mas mask prefiltered_func_data_smooth
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  28. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_smooth -mul 28.90173410404624 prefiltered_func_data_intnorm
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  30. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_intnorm -Tmean tempMean
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  31. 

  32. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_intnorm -bptf 37.49998125000937 -1 -add tempMean prefiltered_func_data_tempfilt
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  34. /usr/share/fsl/5.0/bin/imrm tempMean
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  36. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_tempfilt filtered_func_data
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  38. /usr/share/fsl/5.0/bin/fslmaths filtered_func_data -Tmean mean_func
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  39. 

  40. /bin/rm -rf prefiltered_func_data*
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