We use cookies to ensure you get the best experience on our website
Inicio Explorar Axuda News
Rexistro Iniciar sesión
chaeusler
/
studyforrest-ppa-analysis
DOI
10.12751/g-node.7is9s6
1
1
Fork 1
Ficheiros Incidencias 0 Pull Requests 0
Rama: master
Ramas Etiquetas
studyforrest...
/
sub-04
/
run-3_audio-ppa-grp.feat
/
report_log.html

report_log.html 18 KB
Permalink Histórico Download

123456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778798081828384858687888990919293949596979899100101102103104105106107108109110111112113114115116117118119120121122123124125126127128129130131132133134135136137138139140141142143144145146147148149150151152153154155156157158159160161162163164165166167168169170171172173174175176177178179180181182183184185186187188189190191192193194195196197198199200201202203204205206207208209210211212213214215216217218219220221222223224225226227228229230231232233234235236237238239240241242243244245246247248249250251252253254255256257258259260261262263264265266267268269270271272273274275276277278279280281282283284285286287288289290291292293294295296297298299300301302303304305306307308309310311312313314315316317318319320321322323324325326327328329330331332333334335336337338339340341342343344345346347348349350351352353354355356357358359360361362363364 
  1. <HTML><HEAD>
    2. 

  2. <!--refreshstart-->
    3. 

  3. 

  4. <!--refreshstop-->
    5. 

  5. <link REL=stylesheet TYPE=text/css href=.files/fsl.css>
    6. 

  6. <TITLE>FSL</TITLE></HEAD><BODY><OBJECT data=report.html></OBJECT>
    7. 

  7. <h2>Progress Report / Log</h2>
    8. 

  8. Started at Sat 14 Mar 2020 02:13:39 AM CET<p>
    9. 

  9. Feat main script<br><pre>
    10. 

  10. 

  11. /bin/cp /data/project/studyforrest_ppa/sub-04/run-3_1st_audio-ppa-grp.fsf design.fsf
    12. 

  12. 

  13. /usr/share/fsl/5.0/bin/feat_model design
    14. 

  14. Warning: at least one EV is (close to) a linear combination of the others. You probably need to alter your design.
    15. 

  15. (Design matrix is rank deficient - ratio of min:max eigenvalues in SVD of matrix is 5.73733e-18)
    16. 

  16.  Contrasts involving these combinations will be set to zero.
    17. 

  17. 

  18. 

  19. mkdir .files;cp /usr/share/fsl/5.0/doc/fsl.css .files;cp -r /usr/share/fsl/5.0/doc/images .files/images
    20. 

  20. 

  21. /usr/share/fsl/5.0/bin/fsl_sub -T 10 -l logs -N feat0_init   /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-grp.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-grp.feat -I 1 -init
    22. 

  22. 16891
    23. 

  23. 

  24. /usr/share/fsl/5.0/bin/fsl_sub -T 111 -l logs -N feat2_pre -j 16891  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-grp.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-grp.feat -I 1 -prestats
    25. 

  25. 18328
    26. 

  26. 

  27. /usr/share/fsl/5.0/bin/fsl_sub -T 247 -l logs -N feat3_film -j 18328  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-grp.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-grp.feat -I 1 -stats
    28. 

  28. 24750
    29. 

  29. 

  30. /usr/share/fsl/5.0/bin/fsl_sub -T 119 -l logs -N feat4_post -j 24750  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-grp.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-grp.feat -poststats 0 
    31. 

  31. 15299
    32. 

  32. 

  33. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 18328,24750,15299  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-grp.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-grp.feat -stop
    34. 

  34. 21591
    35. 

  35. </pre><hr>Initialisation<br><pre>
    36. 

  36. 

  37. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/inputs/studyforrest-data-aligned/sub-04/in_bold3Tp2/sub-04_task-aomovie_run-3_bold prefiltered_func_data -odt float
    38. 

  38. Total original volumes = 438
    39. 

  39. 

  40. /usr/share/fsl/5.0/bin/fslroi prefiltered_func_data example_func 219 1
    41. 

  41. </pre><hr>Preprocessing:Stage 1<br><pre>
    42. 

  42. </pre><hr>Preprocessing:Stage 2<br><pre>
    43. 

  43. 

  44. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data -Tmean mean_func
    45. 

  45. 

  46. /usr/share/fsl/5.0/bin/bet2 mean_func mask -f 0.3 -n -m; /usr/share/fsl/5.0/bin/immv mask_mask mask
    47. 

  47. 

  48. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data -mas mask prefiltered_func_data_bet
    49. 

  49. 

  50. /usr/share/fsl/5.0/bin/fslstats prefiltered_func_data_bet -p 2 -p 98
    51. 

  51. 0.000000 536.000000 
    52. 

  52. 

  53. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_bet -thr 53.6 -Tmin -bin mask -odt char
    54. 

  54. 

  55. /usr/share/fsl/5.0/bin/fslstats prefiltered_func_data -k mask -p 50
    56. 

  56. 332.000000 
    57. 

  57. 

  58. /usr/share/fsl/5.0/bin/fslmaths mask -dilF mask
    59. 

  59. 

  60. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data -mas mask prefiltered_func_data_thresh
    61. 

  61. 

  62. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_thresh -Tmean mean_func
    63. 

  63. 

  64. /usr/share/fsl/5.0/bin/susan prefiltered_func_data_thresh 249.0 1.6985138004246285 3 1 1 mean_func 249.0 prefiltered_func_data_smooth
    65. 

  65. 

  66. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_smooth -mas mask prefiltered_func_data_smooth
    67. 

  67. 

  68. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_smooth -mul 30.120481927710845 prefiltered_func_data_intnorm
    69. 

  69. 

  70. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_intnorm -Tmean tempMean
    71. 

  71. 

  72. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_intnorm -bptf 37.5 -1 -add tempMean prefiltered_func_data_tempfilt
    73. 

  73. 

  74. /usr/share/fsl/5.0/bin/imrm tempMean
    75. 

  75. 

  76. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_tempfilt filtered_func_data
    77. 

  77. 

  78. /usr/share/fsl/5.0/bin/fslmaths filtered_func_data -Tmean mean_func
    79. 

  79. 

  80. /bin/rm -rf prefiltered_func_data*
    81. 

  81. </pre><hr>Stats<br><pre>
    82. 

  82. 

  83. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-04/onsets/aomovie/run-3/body.txt custom_timing_files/ev1.txt
    84. 

  84. 

  85. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-04/onsets/aomovie/run-3/bpart.txt custom_timing_files/ev2.txt
    86. 

  86. 

  87. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-04/onsets/aomovie/run-3/fahead.txt custom_timing_files/ev3.txt
    88. 

  88. 

  89. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-04/onsets/aomovie/run-3/furn.txt custom_timing_files/ev4.txt
    90. 

  90. 

  91. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-04/onsets/aomovie/run-3/geo.txt custom_timing_files/ev5.txt
    92. 

  92. 

  93. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-04/onsets/aomovie/run-3/groom.txt custom_timing_files/ev6.txt
    94. 

  94. 

  95. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-04/onsets/aomovie/run-3/obj.txt custom_timing_files/ev7.txt
    96. 

  96. 

  97. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-04/onsets/aomovie/run-3/se_new.txt custom_timing_files/ev8.txt
    98. 

  98. 

  99. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-04/onsets/aomovie/run-3/se_old.txt custom_timing_files/ev9.txt
    100. 

  100. 

  101. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-04/onsets/aomovie/run-3/sex_f.txt custom_timing_files/ev10.txt
    102. 

  102. 

  103. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-04/onsets/aomovie/run-3/sex_m.txt custom_timing_files/ev11.txt
    104. 

  104. 

  105. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-04/onsets/aomovie/run-3/vse_new.txt custom_timing_files/ev12.txt
    106. 

  106. 

  107. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-04/onsets/aomovie/run-3/vse_old.txt custom_timing_files/ev13.txt
    108. 

  108. 

  109. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-04/onsets/aomovie/run-3/vlo_ch.txt custom_timing_files/ev14.txt
    110. 

  110. 

  111. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-04/onsets/aomovie/run-3/vpe_new.txt custom_timing_files/ev15.txt
    112. 

  112. 

  113. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-04/onsets/aomovie/run-3/fg_ad_lrdiff.txt custom_timing_files/ev17.txt
    114. 

  114. 

  115. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-04/onsets/aomovie/run-3/fg_ad_rms.txt custom_timing_files/ev18.txt
    116. 

  116. 

  117. paste -d  ' '  /data/project/studyforrest_ppa/inputs/phase1/sub004/BOLD/task001_run003/bold_dico_moco.txt > confoundevs.txt
    118. 

  118. 

  119. /usr/share/fsl/5.0/bin/feat_model design confoundevs.txt
    120. 

  120. Warning: at least one EV is (close to) a linear combination of the others. You probably need to alter your design.
    121. 

  121. (Design matrix is rank deficient - ratio of min:max eigenvalues in SVD of matrix is 2.65989e-18)
    122. 

  122.  Contrasts involving these combinations will be set to zero.
    123. 

  123. 

  124. 

  125. /usr/share/fsl/5.0/bin/film_gls --in=filtered_func_data --rn=stats --pd=design.mat --thr=1000.0 --sa --ms=5 --con=design.con  
    126. 

  126. Log directory is: stats
    127. 

  127. paradigm.getDesignMatrix().Nrows()=438
    128. 

  128. paradigm.getDesignMatrix().Ncols()=42
    129. 

  129. sizeTS=438
    130. 

  130. numTS=68482
    131. 

  131. Calculating residuals...
    132. 

  132. Completed
    133. 

  133. Estimating residual autocorrelation...
    134. 

  134. Calculating raw AutoCorrs... Completed
    135. 

  135. mode = 8957.41
    136. 

  136. sig = 3510
    137. 

  137. Spatially smoothing auto corr estimates
    138. 

  138. ...................
    139. 

  139. Completed
    140. 

  140. Tukey M = 20
    141. 

  141. Tukey estimates... Completed
    142. 

  142. Completed
    143. 

  143. Prewhitening and Computing PEs...
    144. 

  144. Percentage done:
    145. 

  145. 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,Completed
    146. 

  146. Saving results... 
    147. 

  147. Completed
    148. 

  148. 

  149. /usr/share/fsl/5.0/bin/smoothest -d 396   -m mask -r stats/res4d > stats/smoothness
    150. 

  150. </pre><hr>Post-stats<br><pre>
    151. 

  151. 

  152. /usr/share/fsl/5.0/bin/fslmaths stats/zstat1 -mas mask thresh_zstat1
    153. 

  153. 

  154. echo 68482 > thresh_zstat1.vol
    155. 

  155. zstat1: DLH=0.159801 VOLUME=68482 RESELS=28.9097
    156. 

  156. 

  157. /usr/share/fsl/5.0/bin/fslmaths stats/zstat2 -mas mask thresh_zstat2
    158. 

  158. 

  159. echo 68482 > thresh_zstat2.vol
    160. 

  160. zstat2: DLH=0.159801 VOLUME=68482 RESELS=28.9097
    161. 

  161. 

  162. /usr/share/fsl/5.0/bin/fslmaths stats/zstat3 -mas mask thresh_zstat3
    163. 

  163. 

  164. echo 68482 > thresh_zstat3.vol
    165. 

  165. zstat3: DLH=0.159801 VOLUME=68482 RESELS=28.9097
    166. 

  166. 

  167. /usr/share/fsl/5.0/bin/fslmaths stats/zstat4 -mas mask thresh_zstat4
    168. 

  168. 

  169. echo 68482 > thresh_zstat4.vol
    170. 

  170. zstat4: DLH=0.159801 VOLUME=68482 RESELS=28.9097
    171. 

  171. 

  172. /usr/share/fsl/5.0/bin/fslmaths stats/zstat5 -mas mask thresh_zstat5
    173. 

  173. 

  174. echo 68482 > thresh_zstat5.vol
    175. 

  175. zstat5: DLH=0.159801 VOLUME=68482 RESELS=28.9097
    176. 

  176. 

  177. /usr/share/fsl/5.0/bin/fslmaths stats/zstat6 -mas mask thresh_zstat6
    178. 

  178. 

  179. echo 68482 > thresh_zstat6.vol
    180. 

  180. zstat6: DLH=0.159801 VOLUME=68482 RESELS=28.9097
    181. 

  181. 

  182. /usr/share/fsl/5.0/bin/fslmaths stats/zstat7 -mas mask thresh_zstat7
    183. 

  183. 

  184. echo 68482 > thresh_zstat7.vol
    185. 

  185. zstat7: DLH=0.159801 VOLUME=68482 RESELS=28.9097
    186. 

  186. 

  187. /usr/share/fsl/5.0/bin/fslmaths stats/zstat8 -mas mask thresh_zstat8
    188. 

  188. 

  189. echo 68482 > thresh_zstat8.vol
    190. 

  190. zstat8: DLH=0.159801 VOLUME=68482 RESELS=28.9097
    191. 

  191. 

  192. /usr/share/fsl/5.0/bin/fslmaths stats/zstat9 -mas mask thresh_zstat9
    193. 

  193. 

  194. echo 68482 > thresh_zstat9.vol
    195. 

  195. zstat9: DLH=0.159801 VOLUME=68482 RESELS=28.9097
    196. 

  196. 

  197. /usr/share/fsl/5.0/bin/fslmaths stats/zstat10 -mas mask thresh_zstat10
    198. 

  198. 

  199. echo 68482 > thresh_zstat10.vol
    200. 

  200. zstat10: DLH=0.159801 VOLUME=68482 RESELS=28.9097
    201. 

  201. 

  202. /usr/share/fsl/5.0/bin/fslmaths stats/zstat11 -mas mask thresh_zstat11
    203. 

  203. 

  204. echo 68482 > thresh_zstat11.vol
    205. 

  205. zstat11: DLH=0.159801 VOLUME=68482 RESELS=28.9097
    206. 

  206. 

  207. /usr/share/fsl/5.0/bin/fslmaths stats/zstat12 -mas mask thresh_zstat12
    208. 

  208. 

  209. echo 68482 > thresh_zstat12.vol
    210. 

  210. zstat12: DLH=0.159801 VOLUME=68482 RESELS=28.9097
    211. 

  211. 

  212. /usr/share/fsl/5.0/bin/fslmaths stats/zstat13 -mas mask thresh_zstat13
    213. 

  213. 

  214. echo 68482 > thresh_zstat13.vol
    215. 

  215. zstat13: DLH=0.159801 VOLUME=68482 RESELS=28.9097
    216. 

  216. 

  217. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat1 -c stats/cope1 -t 3.4 -p 0.05 -d 0.159801 --volume=68482 --othresh=thresh_zstat1 -o cluster_mask_zstat1 --connectivity=26  --olmax=lmax_zstat1.txt --scalarname=Z > cluster_zstat1.txt
    218. 

  218. 

  219. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat1 
    220. 

  220. 

  221. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat2 -c stats/cope2 -t 3.4 -p 0.05 -d 0.159801 --volume=68482 --othresh=thresh_zstat2 -o cluster_mask_zstat2 --connectivity=26  --olmax=lmax_zstat2.txt --scalarname=Z > cluster_zstat2.txt
    222. 

  222. 

  223. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat2 
    224. 

  224. 

  225. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat3 -c stats/cope3 -t 3.4 -p 0.05 -d 0.159801 --volume=68482 --othresh=thresh_zstat3 -o cluster_mask_zstat3 --connectivity=26  --olmax=lmax_zstat3.txt --scalarname=Z > cluster_zstat3.txt
    226. 

  226. 

  227. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat3 
    228. 

  228. 

  229. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat4 -c stats/cope4 -t 3.4 -p 0.05 -d 0.159801 --volume=68482 --othresh=thresh_zstat4 -o cluster_mask_zstat4 --connectivity=26  --olmax=lmax_zstat4.txt --scalarname=Z > cluster_zstat4.txt
    230. 

  230. 

  231. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat4 
    232. 

  232. 

  233. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat5 -c stats/cope5 -t 3.4 -p 0.05 -d 0.159801 --volume=68482 --othresh=thresh_zstat5 -o cluster_mask_zstat5 --connectivity=26  --olmax=lmax_zstat5.txt --scalarname=Z > cluster_zstat5.txt
    234. 

  234. 

  235. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat5 
    236. 

  236. 

  237. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat6 -c stats/cope6 -t 3.4 -p 0.05 -d 0.159801 --volume=68482 --othresh=thresh_zstat6 -o cluster_mask_zstat6 --connectivity=26  --olmax=lmax_zstat6.txt --scalarname=Z > cluster_zstat6.txt
    238. 

  238. 

  239. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat6 
    240. 

  240. 

  241. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat7 -c stats/cope7 -t 3.4 -p 0.05 -d 0.159801 --volume=68482 --othresh=thresh_zstat7 -o cluster_mask_zstat7 --connectivity=26  --olmax=lmax_zstat7.txt --scalarname=Z > cluster_zstat7.txt
    242. 

  242. 

  243. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat7 
    244. 

  244. 

  245. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat8 -c stats/cope8 -t 3.4 -p 0.05 -d 0.159801 --volume=68482 --othresh=thresh_zstat8 -o cluster_mask_zstat8 --connectivity=26  --olmax=lmax_zstat8.txt --scalarname=Z > cluster_zstat8.txt
    246. 

  246. 

  247. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat8 
    248. 

  248. 

  249. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat9 -c stats/cope9 -t 3.4 -p 0.05 -d 0.159801 --volume=68482 --othresh=thresh_zstat9 -o cluster_mask_zstat9 --connectivity=26  --olmax=lmax_zstat9.txt --scalarname=Z > cluster_zstat9.txt
    250. 

  250. 

  251. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat9 
    252. 

  252. 

  253. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat10 -c stats/cope10 -t 3.4 -p 0.05 -d 0.159801 --volume=68482 --othresh=thresh_zstat10 -o cluster_mask_zstat10 --connectivity=26  --olmax=lmax_zstat10.txt --scalarname=Z > cluster_zstat10.txt
    254. 

  254. 

  255. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat10 
    256. 

  256. 

  257. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat11 -c stats/cope11 -t 3.4 -p 0.05 -d 0.159801 --volume=68482 --othresh=thresh_zstat11 -o cluster_mask_zstat11 --connectivity=26  --olmax=lmax_zstat11.txt --scalarname=Z > cluster_zstat11.txt
    258. 

  258. 

  259. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat11 
    260. 

  260. 

  261. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat12 -c stats/cope12 -t 3.4 -p 0.05 -d 0.159801 --volume=68482 --othresh=thresh_zstat12 -o cluster_mask_zstat12 --connectivity=26  --olmax=lmax_zstat12.txt --scalarname=Z > cluster_zstat12.txt
    262. 

  262. 

  263. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat12 
    264. 

  264. 

  265. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat13 -c stats/cope13 -t 3.4 -p 0.05 -d 0.159801 --volume=68482 --othresh=thresh_zstat13 -o cluster_mask_zstat13 --connectivity=26  --olmax=lmax_zstat13.txt --scalarname=Z > cluster_zstat13.txt
    266. 

  266. 

  267. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat13 
    268. 

  268. 

  269. /usr/share/fsl/5.0/bin/fslstats thresh_zstat1 -l 0.0001 -R 2>/dev/null
    270. 

  270. 0.000000 0.000000 
    271. 

  271. 

  272. /usr/share/fsl/5.0/bin/fslstats thresh_zstat2 -l 0.0001 -R 2>/dev/null
    273. 

  273. 0.000000 0.000000 
    274. 

  274. 

  275. /usr/share/fsl/5.0/bin/fslstats thresh_zstat3 -l 0.0001 -R 2>/dev/null
    276. 

  276. 0.000000 0.000000 
    277. 

  277. 

  278. /usr/share/fsl/5.0/bin/fslstats thresh_zstat4 -l 0.0001 -R 2>/dev/null
    279. 

  279. 0.000000 0.000000 
    280. 

  280. 

  281. /usr/share/fsl/5.0/bin/fslstats thresh_zstat5 -l 0.0001 -R 2>/dev/null
    282. 

  282. 0.000000 0.000000 
    283. 

  283. 

  284. /usr/share/fsl/5.0/bin/fslstats thresh_zstat6 -l 0.0001 -R 2>/dev/null
    285. 

  285. 0.000000 0.000000 
    286. 

  286. 

  287. /usr/share/fsl/5.0/bin/fslstats thresh_zstat7 -l 0.0001 -R 2>/dev/null
    288. 

  288. 0.000000 0.000000 
    289. 

  289. 

  290. /usr/share/fsl/5.0/bin/fslstats thresh_zstat8 -l 0.0001 -R 2>/dev/null
    291. 

  291. 0.000000 0.000000 
    292. 

  292. 

  293. /usr/share/fsl/5.0/bin/fslstats thresh_zstat9 -l 0.0001 -R 2>/dev/null
    294. 

  294. 0.000000 0.000000 
    295. 

  295. 

  296. /usr/share/fsl/5.0/bin/fslstats thresh_zstat10 -l 0.0001 -R 2>/dev/null
    297. 

  297. 0.000000 0.000000 
    298. 

  298. 

  299. /usr/share/fsl/5.0/bin/fslstats thresh_zstat11 -l 0.0001 -R 2>/dev/null
    300. 

  300. 0.000000 0.000000 
    301. 

  301. 

  302. /usr/share/fsl/5.0/bin/fslstats thresh_zstat12 -l 0.0001 -R 2>/dev/null
    303. 

  303. 0.000000 0.000000 
    304. 

  304. 

  305. /usr/share/fsl/5.0/bin/fslstats thresh_zstat13 -l 0.0001 -R 2>/dev/null
    306. 

  306. 3.403878 4.070723 
    307. 

  307. Rendering using zmin=3.403878 zmax=4.070723
    308. 

  308. 

  309. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat1 3.403878 4.070723 rendered_thresh_zstat1
    310. 

  310. 

  311. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat1 -A 750 rendered_thresh_zstat1.png
    312. 

  312. 

  313. /bin/cp /usr/share/fsl/5.0/etc/luts/ramp.gif .ramp.gif
    314. 

  314. 

  315. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat2 3.403878 4.070723 rendered_thresh_zstat2
    316. 

  316. 

  317. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat2 -A 750 rendered_thresh_zstat2.png
    318. 

  318. 

  319. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat3 3.403878 4.070723 rendered_thresh_zstat3
    320. 

  320. 

  321. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat3 -A 750 rendered_thresh_zstat3.png
    322. 

  322. 

  323. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat4 3.403878 4.070723 rendered_thresh_zstat4
    324. 

  324. 

  325. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat4 -A 750 rendered_thresh_zstat4.png
    326. 

  326. 

  327. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat5 3.403878 4.070723 rendered_thresh_zstat5
    328. 

  328. 

  329. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat5 -A 750 rendered_thresh_zstat5.png
    330. 

  330. 

  331. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat6 3.403878 4.070723 rendered_thresh_zstat6
    332. 

  332. 

  333. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat6 -A 750 rendered_thresh_zstat6.png
    334. 

  334. 

  335. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat7 3.403878 4.070723 rendered_thresh_zstat7
    336. 

  336. 

  337. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat7 -A 750 rendered_thresh_zstat7.png
    338. 

  338. 

  339. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat8 3.403878 4.070723 rendered_thresh_zstat8
    340. 

  340. 

  341. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat8 -A 750 rendered_thresh_zstat8.png
    342. 

  342. 

  343. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat9 3.403878 4.070723 rendered_thresh_zstat9
    344. 

  344. 

  345. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat9 -A 750 rendered_thresh_zstat9.png
    346. 

  346. 

  347. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat10 3.403878 4.070723 rendered_thresh_zstat10
    348. 

  348. 

  349. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat10 -A 750 rendered_thresh_zstat10.png
    350. 

  350. 

  351. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat11 3.403878 4.070723 rendered_thresh_zstat11
    352. 

  352. 

  353. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat11 -A 750 rendered_thresh_zstat11.png
    354. 

  354. 

  355. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat12 3.403878 4.070723 rendered_thresh_zstat12
    356. 

  356. 

  357. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat12 -A 750 rendered_thresh_zstat12.png
    358. 

  358. 

  359. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat13 3.403878 4.070723 rendered_thresh_zstat13
    360. 

  360. 

  361. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat13 -A 750 rendered_thresh_zstat13.png
    362. 

  362. 

  363. mkdir -p tsplot ; /usr/share/fsl/5.0/bin/tsplot . -f filtered_func_data -o tsplot
    364. 

  364. </pre><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br></BODY></HTML>
    365.