123456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778798081828384858687888990919293949596979899100101102103104105106107108109110111112113114115116117118119120121122123124125126127128129130131132133134135136137138139140141142143144145146147148149150151152153154155156157158159160161162163164165166167168169170171172173174175176177178179180181182183184185186187188189190191192193194195196197198199200201202203204205206207208209210211212213214 |
- </pre><hr>Post-stats<br><pre>
- /usr/share/fsl/5.0/bin/fslmaths stats/zstat1 -mas mask thresh_zstat1
- echo 68482 > thresh_zstat1.vol
- zstat1: DLH=0.159801 VOLUME=68482 RESELS=28.9097
- /usr/share/fsl/5.0/bin/fslmaths stats/zstat2 -mas mask thresh_zstat2
- echo 68482 > thresh_zstat2.vol
- zstat2: DLH=0.159801 VOLUME=68482 RESELS=28.9097
- /usr/share/fsl/5.0/bin/fslmaths stats/zstat3 -mas mask thresh_zstat3
- echo 68482 > thresh_zstat3.vol
- zstat3: DLH=0.159801 VOLUME=68482 RESELS=28.9097
- /usr/share/fsl/5.0/bin/fslmaths stats/zstat4 -mas mask thresh_zstat4
- echo 68482 > thresh_zstat4.vol
- zstat4: DLH=0.159801 VOLUME=68482 RESELS=28.9097
- /usr/share/fsl/5.0/bin/fslmaths stats/zstat5 -mas mask thresh_zstat5
- echo 68482 > thresh_zstat5.vol
- zstat5: DLH=0.159801 VOLUME=68482 RESELS=28.9097
- /usr/share/fsl/5.0/bin/fslmaths stats/zstat6 -mas mask thresh_zstat6
- echo 68482 > thresh_zstat6.vol
- zstat6: DLH=0.159801 VOLUME=68482 RESELS=28.9097
- /usr/share/fsl/5.0/bin/fslmaths stats/zstat7 -mas mask thresh_zstat7
- echo 68482 > thresh_zstat7.vol
- zstat7: DLH=0.159801 VOLUME=68482 RESELS=28.9097
- /usr/share/fsl/5.0/bin/fslmaths stats/zstat8 -mas mask thresh_zstat8
- echo 68482 > thresh_zstat8.vol
- zstat8: DLH=0.159801 VOLUME=68482 RESELS=28.9097
- /usr/share/fsl/5.0/bin/fslmaths stats/zstat9 -mas mask thresh_zstat9
- echo 68482 > thresh_zstat9.vol
- zstat9: DLH=0.159801 VOLUME=68482 RESELS=28.9097
- /usr/share/fsl/5.0/bin/fslmaths stats/zstat10 -mas mask thresh_zstat10
- echo 68482 > thresh_zstat10.vol
- zstat10: DLH=0.159801 VOLUME=68482 RESELS=28.9097
- /usr/share/fsl/5.0/bin/fslmaths stats/zstat11 -mas mask thresh_zstat11
- echo 68482 > thresh_zstat11.vol
- zstat11: DLH=0.159801 VOLUME=68482 RESELS=28.9097
- /usr/share/fsl/5.0/bin/fslmaths stats/zstat12 -mas mask thresh_zstat12
- echo 68482 > thresh_zstat12.vol
- zstat12: DLH=0.159801 VOLUME=68482 RESELS=28.9097
- /usr/share/fsl/5.0/bin/fslmaths stats/zstat13 -mas mask thresh_zstat13
- echo 68482 > thresh_zstat13.vol
- zstat13: DLH=0.159801 VOLUME=68482 RESELS=28.9097
- /usr/share/fsl/5.0/bin/cluster -i thresh_zstat1 -c stats/cope1 -t 3.4 -p 0.05 -d 0.159801 --volume=68482 --othresh=thresh_zstat1 -o cluster_mask_zstat1 --connectivity=26 --olmax=lmax_zstat1.txt --scalarname=Z > cluster_zstat1.txt
- /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat1
- /usr/share/fsl/5.0/bin/cluster -i thresh_zstat2 -c stats/cope2 -t 3.4 -p 0.05 -d 0.159801 --volume=68482 --othresh=thresh_zstat2 -o cluster_mask_zstat2 --connectivity=26 --olmax=lmax_zstat2.txt --scalarname=Z > cluster_zstat2.txt
- /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat2
- /usr/share/fsl/5.0/bin/cluster -i thresh_zstat3 -c stats/cope3 -t 3.4 -p 0.05 -d 0.159801 --volume=68482 --othresh=thresh_zstat3 -o cluster_mask_zstat3 --connectivity=26 --olmax=lmax_zstat3.txt --scalarname=Z > cluster_zstat3.txt
- /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat3
- /usr/share/fsl/5.0/bin/cluster -i thresh_zstat4 -c stats/cope4 -t 3.4 -p 0.05 -d 0.159801 --volume=68482 --othresh=thresh_zstat4 -o cluster_mask_zstat4 --connectivity=26 --olmax=lmax_zstat4.txt --scalarname=Z > cluster_zstat4.txt
- /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat4
- /usr/share/fsl/5.0/bin/cluster -i thresh_zstat5 -c stats/cope5 -t 3.4 -p 0.05 -d 0.159801 --volume=68482 --othresh=thresh_zstat5 -o cluster_mask_zstat5 --connectivity=26 --olmax=lmax_zstat5.txt --scalarname=Z > cluster_zstat5.txt
- /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat5
- /usr/share/fsl/5.0/bin/cluster -i thresh_zstat6 -c stats/cope6 -t 3.4 -p 0.05 -d 0.159801 --volume=68482 --othresh=thresh_zstat6 -o cluster_mask_zstat6 --connectivity=26 --olmax=lmax_zstat6.txt --scalarname=Z > cluster_zstat6.txt
- /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat6
- /usr/share/fsl/5.0/bin/cluster -i thresh_zstat7 -c stats/cope7 -t 3.4 -p 0.05 -d 0.159801 --volume=68482 --othresh=thresh_zstat7 -o cluster_mask_zstat7 --connectivity=26 --olmax=lmax_zstat7.txt --scalarname=Z > cluster_zstat7.txt
- /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat7
- /usr/share/fsl/5.0/bin/cluster -i thresh_zstat8 -c stats/cope8 -t 3.4 -p 0.05 -d 0.159801 --volume=68482 --othresh=thresh_zstat8 -o cluster_mask_zstat8 --connectivity=26 --olmax=lmax_zstat8.txt --scalarname=Z > cluster_zstat8.txt
- /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat8
- /usr/share/fsl/5.0/bin/cluster -i thresh_zstat9 -c stats/cope9 -t 3.4 -p 0.05 -d 0.159801 --volume=68482 --othresh=thresh_zstat9 -o cluster_mask_zstat9 --connectivity=26 --olmax=lmax_zstat9.txt --scalarname=Z > cluster_zstat9.txt
- /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat9
- /usr/share/fsl/5.0/bin/cluster -i thresh_zstat10 -c stats/cope10 -t 3.4 -p 0.05 -d 0.159801 --volume=68482 --othresh=thresh_zstat10 -o cluster_mask_zstat10 --connectivity=26 --olmax=lmax_zstat10.txt --scalarname=Z > cluster_zstat10.txt
- /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat10
- /usr/share/fsl/5.0/bin/cluster -i thresh_zstat11 -c stats/cope11 -t 3.4 -p 0.05 -d 0.159801 --volume=68482 --othresh=thresh_zstat11 -o cluster_mask_zstat11 --connectivity=26 --olmax=lmax_zstat11.txt --scalarname=Z > cluster_zstat11.txt
- /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat11
- /usr/share/fsl/5.0/bin/cluster -i thresh_zstat12 -c stats/cope12 -t 3.4 -p 0.05 -d 0.159801 --volume=68482 --othresh=thresh_zstat12 -o cluster_mask_zstat12 --connectivity=26 --olmax=lmax_zstat12.txt --scalarname=Z > cluster_zstat12.txt
- /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat12
- /usr/share/fsl/5.0/bin/cluster -i thresh_zstat13 -c stats/cope13 -t 3.4 -p 0.05 -d 0.159801 --volume=68482 --othresh=thresh_zstat13 -o cluster_mask_zstat13 --connectivity=26 --olmax=lmax_zstat13.txt --scalarname=Z > cluster_zstat13.txt
- /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat13
- /usr/share/fsl/5.0/bin/fslstats thresh_zstat1 -l 0.0001 -R 2>/dev/null
- 0.000000 0.000000
- /usr/share/fsl/5.0/bin/fslstats thresh_zstat2 -l 0.0001 -R 2>/dev/null
- 0.000000 0.000000
- /usr/share/fsl/5.0/bin/fslstats thresh_zstat3 -l 0.0001 -R 2>/dev/null
- 0.000000 0.000000
- /usr/share/fsl/5.0/bin/fslstats thresh_zstat4 -l 0.0001 -R 2>/dev/null
- 0.000000 0.000000
- /usr/share/fsl/5.0/bin/fslstats thresh_zstat5 -l 0.0001 -R 2>/dev/null
- 0.000000 0.000000
- /usr/share/fsl/5.0/bin/fslstats thresh_zstat6 -l 0.0001 -R 2>/dev/null
- 0.000000 0.000000
- /usr/share/fsl/5.0/bin/fslstats thresh_zstat7 -l 0.0001 -R 2>/dev/null
- 0.000000 0.000000
- /usr/share/fsl/5.0/bin/fslstats thresh_zstat8 -l 0.0001 -R 2>/dev/null
- 0.000000 0.000000
- /usr/share/fsl/5.0/bin/fslstats thresh_zstat9 -l 0.0001 -R 2>/dev/null
- 0.000000 0.000000
- /usr/share/fsl/5.0/bin/fslstats thresh_zstat10 -l 0.0001 -R 2>/dev/null
- 0.000000 0.000000
- /usr/share/fsl/5.0/bin/fslstats thresh_zstat11 -l 0.0001 -R 2>/dev/null
- 0.000000 0.000000
- /usr/share/fsl/5.0/bin/fslstats thresh_zstat12 -l 0.0001 -R 2>/dev/null
- 0.000000 0.000000
- /usr/share/fsl/5.0/bin/fslstats thresh_zstat13 -l 0.0001 -R 2>/dev/null
- 3.403878 4.070723
- Rendering using zmin=3.403878 zmax=4.070723
- /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat1 3.403878 4.070723 rendered_thresh_zstat1
- /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat1 -A 750 rendered_thresh_zstat1.png
- /bin/cp /usr/share/fsl/5.0/etc/luts/ramp.gif .ramp.gif
- /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat2 3.403878 4.070723 rendered_thresh_zstat2
- /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat2 -A 750 rendered_thresh_zstat2.png
- /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat3 3.403878 4.070723 rendered_thresh_zstat3
- /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat3 -A 750 rendered_thresh_zstat3.png
- /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat4 3.403878 4.070723 rendered_thresh_zstat4
- /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat4 -A 750 rendered_thresh_zstat4.png
- /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat5 3.403878 4.070723 rendered_thresh_zstat5
- /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat5 -A 750 rendered_thresh_zstat5.png
- /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat6 3.403878 4.070723 rendered_thresh_zstat6
- /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat6 -A 750 rendered_thresh_zstat6.png
- /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat7 3.403878 4.070723 rendered_thresh_zstat7
- /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat7 -A 750 rendered_thresh_zstat7.png
- /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat8 3.403878 4.070723 rendered_thresh_zstat8
- /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat8 -A 750 rendered_thresh_zstat8.png
- /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat9 3.403878 4.070723 rendered_thresh_zstat9
- /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat9 -A 750 rendered_thresh_zstat9.png
- /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat10 3.403878 4.070723 rendered_thresh_zstat10
- /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat10 -A 750 rendered_thresh_zstat10.png
- /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat11 3.403878 4.070723 rendered_thresh_zstat11
- /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat11 -A 750 rendered_thresh_zstat11.png
- /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat12 3.403878 4.070723 rendered_thresh_zstat12
- /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat12 -A 750 rendered_thresh_zstat12.png
- /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat13 3.403878 4.070723 rendered_thresh_zstat13
- /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat13 -A 750 rendered_thresh_zstat13.png
- mkdir -p tsplot ; /usr/share/fsl/5.0/bin/tsplot . -f filtered_func_data -o tsplot
|