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feat2_pre

feat2_pre 97 KB
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  1. </pre><hr>Higher-level input files preparation<br><pre>
    2. 

  2. 

  3. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat
    4. 

  4. 

  5. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_P39xoZ -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    6. 

  6. 

  7. 

  8. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_OLg3hj -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    9. 

  9. 

  10. 

  11. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_rhYoBM -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    12. 

  12. 

  13. 

  14. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_4y5UoZ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    15. 

  15. 

  16. 

  17. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_W5FbZ7 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    18. 

  18. 

  19. 

  20. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_pvAjn9 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    21. 

  21. 

  22. 

  23. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_xaMS8l -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    24. 

  24. 

  25. 

  26. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_zbubMy -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    27. 

  27. 

  28. 

  29. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_4FWu0K -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    30. 

  30. 

  31. 

  32. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_isBRwX -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    33. 

  33. 

  34. 

  35. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_cJAZd9 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    36. 

  36. 

  37. 

  38. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_V6BOad -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    39. 

  39. 

  40. 

  41. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_rFNVvq -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    42. 

  42. 

  43. 

  44. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_xL1ZzE -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    45. 

  45. 

  46. 

  47. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_TiSeWQ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    48. 

  48. 

  49. 

  50. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_czfbV3 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    51. 

  51. 

  52. 

  53. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_3NAEgj -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    54. 

  54. 

  55. 

  56. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_dIAM3k -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    57. 

  57. 

  58. 

  59. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_ev9Unx -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    60. 

  60. 

  61. 

  62. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_oPAM5J -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    63. 

  63. 

  64. 

  65. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_Kv0QbW -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    66. 

  66. 

  67. 

  68. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_z2t8o8 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    69. 

  69. 

  70. 

  71. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_OT4YGn -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    72. 

  72. 

  73. 

  74. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_KEZPVn -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    75. 

  75. 

  76. 

  77. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_u59mvD -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    78. 

  78. 

  79. 

  80. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_ThjjFO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    81. 

  81. 

  82. 

  83. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_ZKld44 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    84. 

  84. 

  85. 

  86. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_4skYdh -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    87. 

  87. 

  88. 

  89. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_nD6XCs -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
    90. 

  90. 

  91. 

  92. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat
    93. 

  93. 

  94. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_SvUjMy -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    95. 

  95. 

  96. 

  97. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_1eOtGX -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    98. 

  98. 

  99. 

  100. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_s4dyBu -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    101. 

  101. 

  102. 

  103. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_kLNuHu -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    104. 

  104. 

  105. 

  106. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_L7Vh5G -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    107. 

  107. 

  108. 

  109. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_XBVZwT -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    110. 

  110. 

  111. 

  112. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_2gNVp6 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    113. 

  113. 

  114. 

  115. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_qx8VXi -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    116. 

  116. 

  117. 

  118. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_vXiJou -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    119. 

  119. 

  120. 

  121. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_4kqo2w -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    122. 

  122. 

  123. 

  124. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_fES5bJ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    125. 

  125. 

  126. 

  127. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_xnm2IY -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    128. 

  128. 

  129. 

  130. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_PLDVTa -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    131. 

  131. 

  132. 

  133. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_7eHxqn -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    134. 

  134. 

  135. 

  136. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_bIlirw -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    137. 

  137. 

  138. 

  139. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_cKXlEA -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    140. 

  140. 

  141. 

  142. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_03pncN -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    143. 

  143. 

  144. 

  145. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_Qn7qj2 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    146. 

  146. 

  147. 

  148. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_TCKaNa -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    149. 

  149. 

  150. 

  151. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_iixTin -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    152. 

  152. 

  153. 

  154. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_7frdRz -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    155. 

  155. 

  156. 

  157. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_gHUfCN -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    158. 

  158. 

  159. 

  160. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_Wg5tjO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    161. 

  161. 

  162. 

  163. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_soyS4Z -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    164. 

  164. 

  165. 

  166. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_KZtdtc -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    167. 

  167. 

  168. 

  169. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_b0zlEo -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    170. 

  170. 

  171. 

  172. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_p9P7zB -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    173. 

  173. 

  174. 

  175. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_IiowRQ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    176. 

  176. 

  177. 

  178. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_zdo97R -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
    179. 

  179. 

  180. 

  181. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat
    182. 

  182. 

  183. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_AXcpI9 -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    184. 

  184. 

  185. 

  186. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_sHm5Pz -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    187. 

  187. 

  188. 

  189. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_dLRBYU -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    190. 

  190. 

  191. 

  192. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_bQSWz7 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    193. 

  193. 

  194. 

  195. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_p0iHLk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    196. 

  196. 

  197. 

  198. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_0GTONx -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    199. 

  199. 

  200. 

  201. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_3ftMrI -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    202. 

  202. 

  203. 

  204. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_AcxVGU -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    205. 

  205. 

  206. 

  207. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_K9gVF0 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    208. 

  208. 

  209. 

  210. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_jgg44c -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    211. 

  211. 

  212. 

  213. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_8GEHHn -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    214. 

  214. 

  215. 

  216. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_cbxrJA -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    217. 

  217. 

  218. 

  219. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_IxB4WP -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    220. 

  220. 

  221. 

  222. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_xfXhR2 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    223. 

  223. 

  224. 

  225. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_6lCka3 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    226. 

  226. 

  227. 

  228. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_lASmIh -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    229. 

  229. 

  230. 

  231. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_Di2tYt -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    232. 

  232. 

  233. 

  234. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_7YtDVH -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    235. 

  235. 

  236. 

  237. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_vzcOdU -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    238. 

  238. 

  239. 

  240. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_midby6 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    241. 

  241. 

  242. 

  243. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_uSq516 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    244. 

  244. 

  245. 

  246. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_Pm76Ni -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    247. 

  247. 

  248. 

  249. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_r1Ycav -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    250. 

  250. 

  251. 

  252. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_8BSAtH -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    253. 

  253. 

  254. 

  255. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_920vmU -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    256. 

  256. 

  257. 

  258. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_PfTMza -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    259. 

  259. 

  260. 

  261. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_riTbka -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    262. 

  262. 

  263. 

  264. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_3KQySm -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    265. 

  265. 

  266. 

  267. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_hQXwEz -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
    268. 

  268. 

  269. 

  270. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat
    271. 

  271. 

  272. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_2Cf3rR -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    273. 

  273. 

  274. 

  275. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_uIt805 -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    276. 

  276. 

  277. 

  278. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_tHNUiw -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    279. 

  279. 

  280. 

  281. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_EG6YhL -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    282. 

  282. 

  283. 

  284. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_0YtKfY -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    285. 

  285. 

  286. 

  287. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_s00KS8 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    288. 

  288. 

  289. 

  290. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_9jpDJc -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    291. 

  291. 

  292. 

  293. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_r62M3s -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    294. 

  294. 

  295. 

  296. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_sNacrB -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    297. 

  297. 

  298. 

  299. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_kNyTNO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    300. 

  300. 

  301. 

  302. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_bwzVX0 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    303. 

  303. 

  304. 

  305. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_s1lu5c -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    306. 

  306. 

  307. 

  308. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_kxT6Ci -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    309. 

  309. 

  310. 

  311. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_bJM82t -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    312. 

  312. 

  313. 

  314. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_d2LhBG -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    315. 

  315. 

  316. 

  317. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_YJ0rRS -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    318. 

  318. 

  319. 

  320. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_mjEO81 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    321. 

  321. 

  322. 

  323. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_FTJpEh -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    324. 

  324. 

  325. 

  326. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_ApAVyi -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    327. 

  327. 

  328. 

  329. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_TixLSx -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    330. 

  330. 

  331. 

  332. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_nc2O3K -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    333. 

  333. 

  334. 

  335. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_ofQ8WW -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    336. 

  336. 

  337. 

  338. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_CZmH95 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    339. 

  339. 

  340. 

  341. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_gwXMfi -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    342. 

  342. 

  343. 

  344. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_4EmELm -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    345. 

  345. 

  346. 

  347. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_yOuEGz -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    348. 

  348. 

  349. 

  350. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_lRq3gL -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    351. 

  351. 

  352. 

  353. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_ahNKiX -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    354. 

  354. 

  355. 

  356. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_rF03rd -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
    357. 

  357. 

  358. 

  359. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat
    360. 

  360. 

  361. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_2zyekr -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    362. 

  362. 

  363. 

  364. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_kVnGwH -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    365. 

  365. 

  366. 

  367. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_CLzTmg -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    368. 

  368. 

  369. 

  370. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_wpGfYs -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    371. 

  371. 

  372. 

  373. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_hwYkft -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    374. 

  374. 

  375. 

  376. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_jGzbSF -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    377. 

  377. 

  378. 

  379. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_v0C3gS -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    380. 

  380. 

  381. 

  382. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_Ipw5u4 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    383. 

  383. 

  384. 

  385. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_E4nlni -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    386. 

  386. 

  387. 

  388. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_SZijat -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    389. 

  389. 

  390. 

  391. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_2rudaz -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    392. 

  392. 

  393. 

  394. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_pW3rrK -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    395. 

  395. 

  396. 

  397. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_NUGyLW -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    398. 

  398. 

  399. 

  400. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_MntQca -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    401. 

  401. 

  402. 

  403. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_nu2gam -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    404. 

  404. 

  405. 

  406. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_E3wJIx -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    407. 

  407. 

  408. 

  409. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_AyBfPA -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    410. 

  410. 

  411. 

  412. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_gV6G7Q -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    413. 

  413. 

  414. 

  415. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_xVAPk0 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    416. 

  416. 

  417. 

  418. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_KBkg6f -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    419. 

  419. 

  420. 

  421. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_AQq7Cr -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    422. 

  422. 

  423. 

  424. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_kbu0vG -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    425. 

  425. 

  426. 

  427. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_rUb87G -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    428. 

  428. 

  429. 

  430. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_bfpzpX -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    431. 

  431. 

  432. 

  433. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_C6khA9 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    434. 

  434. 

  435. 

  436. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_l0B8Yl -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    437. 

  437. 

  438. 

  439. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_kZcFWy -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    440. 

  440. 

  441. 

  442. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_Nv2syK -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    443. 

  443. 

  444. 

  445. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_oGRMIL -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
    446. 

  446. 

  447. 

  448. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat
    449. 

  449. 

  450. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_esg4y0 -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    451. 

  451. 

  452. 

  453. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_dEcjAr -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    454. 

  454. 

  455. 

  456. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_L6k7FN -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    457. 

  457. 

  458. 

  459. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_8Tpvr0 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    460. 

  460. 

  461. 

  462. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_M3352c -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    463. 

  463. 

  464. 

  465. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_w9EFxn -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    466. 

  466. 

  467. 

  468. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_TSMb1A -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    469. 

  469. 

  470. 

  471. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_nhiMON -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    472. 

  472. 

  473. 

  474. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_WJtbtN -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    475. 

  475. 

  476. 

  477. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_KAKL2Z -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    478. 

  478. 

  479. 

  480. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_2w65jc -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    481. 

  481. 

  482. 

  483. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_PWfSat -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    484. 

  484. 

  485. 

  486. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_nhcG0E -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    487. 

  487. 

  488. 

  489. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_XLOXkR -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    490. 

  490. 

  491. 

  492. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_yehxfV -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    493. 

  493. 

  494. 

  495. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_k0qTv4 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    496. 

  496. 

  497. 

  498. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_e5adtj -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    499. 

  499. 

  500. 

  501. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_RY6jlw -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    502. 

  502. 

  503. 

  504. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_G3RQnF -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    505. 

  505. 

  506. 

  507. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_Op6o0U -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    508. 

  508. 

  509. 

  510. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_Ptjt5Y -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    511. 

  511. 

  512. 

  513. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_kCwGjb -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    514. 

  514. 

  515. 

  516. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_oeFupk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    517. 

  517. 

  518. 

  519. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_UsOfJA -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    520. 

  520. 

  521. 

  522. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_prkFYL -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    523. 

  523. 

  524. 

  525. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_O2XPwY -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    526. 

  526. 

  527. 

  528. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_RIZCG0 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    529. 

  529. 

  530. 

  531. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_Q3ZGZc -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    532. 

  532. 

  533. 

  534. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_Wp79bo -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
    535. 

  535. 

  536. 

  537. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat
    538. 

  538. 

  539. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_gZIJWC -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    540. 

  540. 

  541. 

  542. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_yr1fd5 -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    543. 

  543. 

  544. 

  545. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_odXdKm -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    546. 

  546. 

  547. 

  548. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_dNntJA -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    549. 

  549. 

  550. 

  551. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_XdwmvL -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    552. 

  552. 

  553. 

  554. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_zlAQiZ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    555. 

  555. 

  556. 

  557. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_28PfGa -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    558. 

  558. 

  559. 

  560. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_QPO7Ye -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    561. 

  561. 

  562. 

  563. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_Y3Yhsr -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    564. 

  564. 

  565. 

  566. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_alMlnE -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    567. 

  567. 

  568. 

  569. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_esL2wQ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    570. 

  570. 

  571. 

  572. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_xBVmU2 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    573. 

  573. 

  574. 

  575. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_lShbyf -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    576. 

  576. 

  577. 

  578. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_SpJHQf -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    579. 

  579. 

  580. 

  581. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_Yj6pSv -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    582. 

  582. 

  583. 

  584. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_Cd1pXH -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    585. 

  585. 

  586. 

  587. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_ezevjT -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    588. 

  588. 

  589. 

  590. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_f1afU5 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    591. 

  591. 

  592. 

  593. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_n0bTal -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    594. 

  594. 

  595. 

  596. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_necPYl -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    597. 

  597. 

  598. 

  599. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_pdwwky -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    600. 

  600. 

  601. 

  602. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_0kZsDK -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    603. 

  603. 

  604. 

  605. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_A9WtQ0 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    606. 

  606. 

  607. 

  608. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_3mJReb -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    609. 

  609. 

  610. 

  611. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_7gOeno -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    612. 

  612. 

  613. 

  614. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_fvLFjt -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    615. 

  615. 

  616. 

  617. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_eUNM7F -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    618. 

  618. 

  619. 

  620. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_vSCAuO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    621. 

  621. 

  622. 

  623. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_0EuWO0 -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
    624. 

  624. 

  625. 

  626. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat
    627. 

  627. 

  628. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_uPVt1i -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    629. 

  629. 

  630. 

  631. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_XD5dRz -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    632. 

  632. 

  633. 

  634. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_T3YcE1 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    635. 

  635. 

  636. 

  637. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_HSp2Le -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    638. 

  638. 

  639. 

  640. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_IkLY2t -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    641. 

  641. 

  642. 

  643. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_MNLFdw -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    644. 

  644. 

  645. 

  646. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_3c9lDG -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    647. 

  647. 

  648. 

  649. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_8wfWxT -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    650. 

  650. 

  651. 

  652. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_1BOYA9 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    653. 

  653. 

  654. 

  655. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_sXypUl -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    656. 

  656. 

  657. 

  658. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_vh2dTw -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    659. 

  659. 

  660. 

  661. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_jZU0ZB -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    662. 

  662. 

  663. 

  664. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_fYLiXK -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    665. 

  665. 

  666. 

  667. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_4oAKGX -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    668. 

  668. 

  669. 

  670. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_HXoREd -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    671. 

  671. 

  672. 

  673. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_ESQxPp -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    674. 

  674. 

  675. 

  676. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_CkptcB -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    677. 

  677. 

  678. 

  679. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_uyUgvC -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    680. 

  680. 

  681. 

  682. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_91xEfP -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    683. 

  683. 

  684. 

  685. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_pUEVk1 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    686. 

  686. 

  687. 

  688. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_48RwUc -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    689. 

  689. 

  690. 

  691. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_NOJPbr -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    692. 

  692. 

  693. 

  694. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_Y2tcCC -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    695. 

  695. 

  696. 

  697. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_eAVTbG -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    698. 

  698. 

  699. 

  700. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_vaovJV -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    701. 

  701. 

  702. 

  703. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_ny5F77 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    704. 

  704. 

  705. 

  706. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_C1tDUk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    707. 

  707. 

  708. 

  709. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_yGjbJv -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    710. 

  710. 

  711. 

  712. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_fIDTFL -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
    713. 

  713. 

  714. 

  715. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg/standard bg_image
    716. 

  716. 

  717. /usr/share/fsl/5.0/bin/fslmerge -t mask  /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/mask
    718. 

  718. 

  719. mkdir -p inputreg
    720. 

  720. 

  721. /usr/share/fsl/5.0/bin/fslmaths ../mask -mul 8 -Tmean masksum -odt short
    722. 

  722. 

  723. /usr/share/fsl/5.0/bin/fslmaths masksum -thr 8 -add masksum masksum
    724. 

  724. 

  725. /usr/share/fsl/5.0/bin/overlay 0 0 -c ../bg_image -a masksum 0.9 16 masksum_overlay
    726. 

  726. 

  727. /usr/share/fsl/5.0/bin/slicer masksum_overlay -S 2 750 masksum_overlay.png
    728. 

  728. 

  729. /usr/share/fsl/5.0/bin/fslmaths masksum -mul 0 maskunique
    730. 

  730. 

  731. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 1 -add maskunique maskunique
    732. 

  732. 

  733. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 2 -add maskunique maskunique
    734. 

  734. 

  735. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 3 -add maskunique maskunique
    736. 

  736. 

  737. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 4 -add maskunique maskunique
    738. 

  738. 

  739. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 5 -add maskunique maskunique
    740. 

  740. 

  741. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 6 -add maskunique maskunique
    742. 

  742. 

  743. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 7 -add maskunique maskunique
    744. 

  744. 

  745. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 8 -add maskunique maskunique
    746. 

  746. 

  747. /usr/share/fsl/5.0/bin/fslmaths masksum -thr 7 -uthr 7 -bin -mul maskunique maskunique
    748. 

  748. 

  749. /usr/share/fsl/5.0/bin/overlay 0 0 ../bg_image -a maskunique 0.9 8 maskunique_overlay
    750. 

  750. 

  751. /usr/share/fsl/5.0/bin/slicer maskunique_overlay -S 2 750 maskunique_overlay.png
    752. 

  752. 

  753. /bin/cp /usr/share/fsl/5.0/etc/luts/ramp.gif .ramp.gif
    754. 

  754. 

  755. /usr/share/fsl/5.0/bin/fslmaths mask -Tmin mask
    756. 

  756. 

  757. /usr/share/fsl/5.0/bin/fslmerge -t mean_func  /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/mean_func
    758. 

  758. 

  759. /usr/share/fsl/5.0/bin/fslmaths mean_func -Tmean mean_func
    760. 

  760. 

  761. /usr/share/fsl/5.0/bin/fslmerge -t cope1  /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/cope1
    762. 

  762. 

  763. /usr/share/fsl/5.0/bin/fslmaths cope1 -mas mask cope1
    764. 

  764. 

  765. printf '0.0363577925 ' >> design.lcon
    766. 

  766. 

  767. /usr/share/fsl/5.0/bin/fslmerge -t varcope1  /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope1
    768. 

  768. 

  769. /usr/share/fsl/5.0/bin/fslmaths varcope1 -mas mask varcope1
    770. 

  770. 

  771. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1
    772. 

  772. 

  773. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1
    774. 

  774. 

  775. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1
    776. 

  776. 

  777. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1
    778. 

  778. 

  779. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1
    780. 

  780. 

  781. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1
    782. 

  782. 

  783. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1
    784. 

  784. 

  785. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 221   /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1
    786. 

  786. 

  787. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t1  /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1
    788. 

  788. 

  789. /usr/share/fsl/5.0/bin/fslmaths tdof_t1 -mas mask tdof_t1
    790. 

  790. 

  791. /usr/share/fsl/5.0/bin/fslmerge -t cope2  /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/cope2
    792. 

  792. 

  793. /usr/share/fsl/5.0/bin/fslmaths cope2 -mas mask cope2
    794. 

  794. 

  795. printf '0.03772924625 ' >> design.lcon
    796. 

  796. 

  797. /usr/share/fsl/5.0/bin/fslmerge -t varcope2  /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope2
    798. 

  798. 

  799. /usr/share/fsl/5.0/bin/fslmaths varcope2 -mas mask varcope2
    800. 

  800. 

  801. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2
    802. 

  802. 

  803. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2
    804. 

  804. 

  805. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2
    806. 

  806. 

  807. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2
    808. 

  808. 

  809. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2
    810. 

  810. 

  811. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2
    812. 

  812. 

  813. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2
    814. 

  814. 

  815. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 221   /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2
    816. 

  816. 

  817. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t2  /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2
    818. 

  818. 

  819. /usr/share/fsl/5.0/bin/fslmaths tdof_t2 -mas mask tdof_t2
    820. 

  820. 

  821. /usr/share/fsl/5.0/bin/fslmerge -t cope3  /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/cope3
    822. 

  822. 

  823. /usr/share/fsl/5.0/bin/fslmaths cope3 -mas mask cope3
    824. 

  824. 

  825. printf '0.0166935675 ' >> design.lcon
    826. 

  826. 

  827. /usr/share/fsl/5.0/bin/fslmerge -t varcope3  /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope3
    828. 

  828. 

  829. /usr/share/fsl/5.0/bin/fslmaths varcope3 -mas mask varcope3
    830. 

  830. 

  831. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3
    832. 

  832. 

  833. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3
    834. 

  834. 

  835. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3
    836. 

  836. 

  837. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3
    838. 

  838. 

  839. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3
    840. 

  840. 

  841. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3
    842. 

  842. 

  843. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3
    844. 

  844. 

  845. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 221   /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3
    846. 

  846. 

  847. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t3  /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3
    848. 

  848. 

  849. /usr/share/fsl/5.0/bin/fslmaths tdof_t3 -mas mask tdof_t3
    850. 

  850. 

  851. /usr/share/fsl/5.0/bin/fslmerge -t cope4  /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/cope4
    852. 

  852. 

  853. /usr/share/fsl/5.0/bin/fslmaths cope4 -mas mask cope4
    854. 

  854. 

  855. printf '0.033855643750000004 ' >> design.lcon
    856. 

  856. 

  857. /usr/share/fsl/5.0/bin/fslmerge -t varcope4  /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope4
    858. 

  858. 

  859. /usr/share/fsl/5.0/bin/fslmaths varcope4 -mas mask varcope4
    860. 

  860. 

  861. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4
    862. 

  862. 

  863. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4
    864. 

  864. 

  865. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4
    866. 

  866. 

  867. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4
    868. 

  868. 

  869. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4
    870. 

  870. 

  871. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4
    872. 

  872. 

  873. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4
    874. 

  874. 

  875. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 221   /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4
    876. 

  876. 

  877. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t4  /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4
    878. 

  878. 

  879. /usr/share/fsl/5.0/bin/fslmaths tdof_t4 -mas mask tdof_t4
    880. 

  880. 

  881. /usr/share/fsl/5.0/bin/fslmerge -t cope5  /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/cope5
    882. 

  882. 

  883. /usr/share/fsl/5.0/bin/fslmaths cope5 -mas mask cope5
    884. 

  884. 

  885. printf '0.029533465 ' >> design.lcon
    886. 

  886. 

  887. /usr/share/fsl/5.0/bin/fslmerge -t varcope5  /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope5
    888. 

  888. 

  889. /usr/share/fsl/5.0/bin/fslmaths varcope5 -mas mask varcope5
    890. 

  890. 

  891. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5
    892. 

  892. 

  893. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5
    894. 

  894. 

  895. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5
    896. 

  896. 

  897. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5
    898. 

  898. 

  899. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5
    900. 

  900. 

  901. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5
    902. 

  902. 

  903. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5
    904. 

  904. 

  905. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 221   /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5
    906. 

  906. 

  907. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t5  /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5
    908. 

  908. 

  909. /usr/share/fsl/5.0/bin/fslmaths tdof_t5 -mas mask tdof_t5
    910. 

  910. 

  911. /usr/share/fsl/5.0/bin/fslmerge -t cope6  /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/cope6
    912. 

  912. 

  913. /usr/share/fsl/5.0/bin/fslmaths cope6 -mas mask cope6
    914. 

  914. 

  915. printf '0.029556467499999996 ' >> design.lcon
    916. 

  916. 

  917. /usr/share/fsl/5.0/bin/fslmerge -t varcope6  /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope6
    918. 

  918. 

  919. /usr/share/fsl/5.0/bin/fslmaths varcope6 -mas mask varcope6
    920. 

  920. 

  921. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6
    922. 

  922. 

  923. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6
    924. 

  924. 

  925. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6
    926. 

  926. 

  927. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6
    928. 

  928. 

  929. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6
    930. 

  930. 

  931. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6
    932. 

  932. 

  933. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6
    934. 

  934. 

  935. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 221   /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6
    936. 

  936. 

  937. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t6  /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6
    938. 

  938. 

  939. /usr/share/fsl/5.0/bin/fslmaths tdof_t6 -mas mask tdof_t6
    940. 

  940. 

  941. /usr/share/fsl/5.0/bin/fslmerge -t cope7  /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/cope7
    942. 

  942. 

  943. /usr/share/fsl/5.0/bin/fslmaths cope7 -mas mask cope7
    944. 

  944. 

  945. printf '0.0237121175 ' >> design.lcon
    946. 

  946. 

  947. /usr/share/fsl/5.0/bin/fslmerge -t varcope7  /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope7
    948. 

  948. 

  949. /usr/share/fsl/5.0/bin/fslmaths varcope7 -mas mask varcope7
    950. 

  950. 

  951. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7
    952. 

  952. 

  953. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7
    954. 

  954. 

  955. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7
    956. 

  956. 

  957. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7
    958. 

  958. 

  959. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7
    960. 

  960. 

  961. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7
    962. 

  962. 

  963. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7
    964. 

  964. 

  965. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 221   /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7
    966. 

  966. 

  967. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t7  /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7
    968. 

  968. 

  969. /usr/share/fsl/5.0/bin/fslmaths tdof_t7 -mas mask tdof_t7
    970. 

  970. 

  971. /usr/share/fsl/5.0/bin/fslmerge -t cope8  /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/cope8
    972. 

  972. 

  973. /usr/share/fsl/5.0/bin/fslmaths cope8 -mas mask cope8
    974. 

  974. 

  975. printf '0.08424101125 ' >> design.lcon
    976. 

  976. 

  977. /usr/share/fsl/5.0/bin/fslmerge -t varcope8  /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope8
    978. 

  978. 

  979. /usr/share/fsl/5.0/bin/fslmaths varcope8 -mas mask varcope8
    980. 

  980. 

  981. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8
    982. 

  982. 

  983. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8
    984. 

  984. 

  985. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8
    986. 

  986. 

  987. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8
    988. 

  988. 

  989. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8
    990. 

  990. 

  991. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8
    992. 

  992. 

  993. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8
    994. 

  994. 

  995. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 221   /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8
    996. 

  996. 

  997. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t8  /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8
    998. 

  998. 

  999. /usr/share/fsl/5.0/bin/fslmaths tdof_t8 -mas mask tdof_t8
    1000. 

  1000. 

  1001. /usr/share/fsl/5.0/bin/fslmerge -t cope9  /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/cope9
    1002. 

  1002. 

  1003. /usr/share/fsl/5.0/bin/fslmaths cope9 -mas mask cope9
    1004. 

  1004. 

  1005. printf '0.059774681249999996 ' >> design.lcon
    1006. 

  1006. 

  1007. /usr/share/fsl/5.0/bin/fslmerge -t varcope9  /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope9
    1008. 

  1008. 

  1009. /usr/share/fsl/5.0/bin/fslmaths varcope9 -mas mask varcope9
    1010. 

  1010. 

  1011. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9
    1012. 

  1012. 

  1013. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9
    1014. 

  1014. 

  1015. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9
    1016. 

  1016. 

  1017. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9
    1018. 

  1018. 

  1019. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9
    1020. 

  1020. 

  1021. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9
    1022. 

  1022. 

  1023. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9
    1024. 

  1024. 

  1025. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 221   /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9
    1026. 

  1026. 

  1027. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t9  /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9
    1028. 

  1028. 

  1029. /usr/share/fsl/5.0/bin/fslmaths tdof_t9 -mas mask tdof_t9
    1030. 

  1030. 

  1031. /usr/share/fsl/5.0/bin/fslmerge -t cope10  /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/cope10
    1032. 

  1032. 

  1033. /usr/share/fsl/5.0/bin/fslmaths cope10 -mas mask cope10
    1034. 

  1034. 

  1035. printf '0.0389515175 ' >> design.lcon
    1036. 

  1036. 

  1037. /usr/share/fsl/5.0/bin/fslmerge -t varcope10  /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope10
    1038. 

  1038. 

  1039. /usr/share/fsl/5.0/bin/fslmaths varcope10 -mas mask varcope10
    1040. 

  1040. 

  1041. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10
    1042. 

  1042. 

  1043. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10
    1044. 

  1044. 

  1045. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10
    1046. 

  1046. 

  1047. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10
    1048. 

  1048. 

  1049. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10
    1050. 

  1050. 

  1051. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10
    1052. 

  1052. 

  1053. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10
    1054. 

  1054. 

  1055. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 221   /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10
    1056. 

  1056. 

  1057. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t10  /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10
    1058. 

  1058. 

  1059. /usr/share/fsl/5.0/bin/fslmaths tdof_t10 -mas mask tdof_t10
    1060. 

  1060. 

  1061. /usr/share/fsl/5.0/bin/fslmerge -t cope11  /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/cope11
    1062. 

  1062. 

  1063. /usr/share/fsl/5.0/bin/fslmaths cope11 -mas mask cope11
    1064. 

  1064. 

  1065. printf '0.04649019625 ' >> design.lcon
    1066. 

  1066. 

  1067. /usr/share/fsl/5.0/bin/fslmerge -t varcope11  /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope11
    1068. 

  1068. 

  1069. /usr/share/fsl/5.0/bin/fslmaths varcope11 -mas mask varcope11
    1070. 

  1070. 

  1071. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11
    1072. 

  1072. 

  1073. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11
    1074. 

  1074. 

  1075. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11
    1076. 

  1076. 

  1077. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11
    1078. 

  1078. 

  1079. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11
    1080. 

  1080. 

  1081. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11
    1082. 

  1082. 

  1083. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11
    1084. 

  1084. 

  1085. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 221   /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11
    1086. 

  1086. 

  1087. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t11  /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11
    1088. 

  1088. 

  1089. /usr/share/fsl/5.0/bin/fslmaths tdof_t11 -mas mask tdof_t11
    1090. 

  1090. 

  1091. /usr/share/fsl/5.0/bin/fslmerge -t cope12  /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/cope12
    1092. 

  1092. 

  1093. /usr/share/fsl/5.0/bin/fslmaths cope12 -mas mask cope12
    1094. 

  1094. 

  1095. printf '0.029414140000000002 ' >> design.lcon
    1096. 

  1096. 

  1097. /usr/share/fsl/5.0/bin/fslmerge -t varcope12  /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope12
    1098. 

  1098. 

  1099. /usr/share/fsl/5.0/bin/fslmaths varcope12 -mas mask varcope12
    1100. 

  1100. 

  1101. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12
    1102. 

  1102. 

  1103. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12
    1104. 

  1104. 

  1105. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12
    1106. 

  1106. 

  1107. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12
    1108. 

  1108. 

  1109. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12
    1110. 

  1110. 

  1111. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12
    1112. 

  1112. 

  1113. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12
    1114. 

  1114. 

  1115. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 221   /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12
    1116. 

  1116. 

  1117. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t12  /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12
    1118. 

  1118. 

  1119. /usr/share/fsl/5.0/bin/fslmaths tdof_t12 -mas mask tdof_t12
    1120. 

  1120. 

  1121. /usr/share/fsl/5.0/bin/fslmerge -t cope13  /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/cope13
    1122. 

  1122. 

  1123. /usr/share/fsl/5.0/bin/fslmaths cope13 -mas mask cope13
    1124. 

  1124. 

  1125. printf '0.04173992375 ' >> design.lcon
    1126. 

  1126. 

  1127. /usr/share/fsl/5.0/bin/fslmerge -t varcope13  /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope13
    1128. 

  1128. 

  1129. /usr/share/fsl/5.0/bin/fslmaths varcope13 -mas mask varcope13
    1130. 

  1130. 

  1131. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13
    1132. 

  1132. 

  1133. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13
    1134. 

  1134. 

  1135. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13
    1136. 

  1136. 

  1137. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13
    1138. 

  1138. 

  1139. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13
    1140. 

  1140. 

  1141. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13
    1142. 

  1142. 

  1143. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13
    1144. 

  1144. 

  1145. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 221   /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13
    1146. 

  1146. 

  1147. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t13  /data/project/studyforrest_ppa/sub-04/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-04/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-04/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-04/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-04/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-04/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-04/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-04/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13
    1148. 

  1148. 

  1149. /usr/share/fsl/5.0/bin/fslmaths tdof_t13 -mas mask tdof_t13
    1150.