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chaeusler
/
studyforrest-ppa-analysis
DOI
10.12751/g-node.7is9s6
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studyforrest...
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sub-04
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2nd-lvl_audio-ppa-ind.gfeat
/
cope11.feat
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report_log.html

report_log.html 2.3 KB
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  1. <HTML><HEAD>
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  2. <!--refreshstart-->
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  3. 

  4. <!--refreshstop-->
    5. 

  5. <link REL=stylesheet TYPE=text/css href=.files/fsl.css>
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  6. <TITLE>FSL</TITLE></HEAD><BODY><OBJECT data=report.html></OBJECT>
    7. 

  7. <h2>Progress Report / Log</h2>
    8. 

  8. Started at Thu 19 Mar 2020 10:41:04 AM CET<p>
    9. 

  9. <pre>
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  10. 

  11. cp -r ../.files .files
    12. 

  12. </pre><hr>Higher-level stats<br><pre>
    13. 

  13. 

  14. cat ../design.lcon | awk '{ print  }' > design.lcon
    15. 

  15. /usr/share/fsl/5.0/bin/flameo --cope=filtered_func_data --vc=var_filtered_func_data --dvc=tdof_filtered_func_data --mask=mask --ld=stats --dm=design.mat --cs=design.grp --tc=design.con  --runmode=fe
    16. 

  16. Log directory is: stats
    17. 

  17. Setting up:
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  18. ntptsing=8.000000 
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  19. 

  20. evs_group=1.000000 
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  21. 

  22. No f contrasts
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  23. 

  24. WARNING: The passed in varcope file, var_filtered_func_data, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
    25. 

  25. nevs=1
    26. 

  26. ntpts=8
    27. 

  27. ngs=1
    28. 

  28. nvoxels=64419
    29. 

  29. Running:
    30. 

  30. nmaskvoxels=64419
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  31.  1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
    32. 

  32. Saving results
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  33. 

  34. Log directory was: stats
    35. 

  35. 

  36. /bin/rm -f stats/zem* stats/zols* stats/mask* ; /bin/mv dof stats
    37. 

  37. 

  38. /usr/share/fsl/5.0/bin/smoothest -d 7 -m mask -r stats/res4d > stats/smoothness
    39. 

  39. </pre><hr>Post-stats<br><pre>
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  40. 

  41. /usr/share/fsl/5.0/bin/fslmaths stats/zstat1 -mas mask thresh_zstat1
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  42. 

  43. echo 64419 > thresh_zstat1.vol
    44. 

  44. zstat1: DLH=0.228356 VOLUME=64419 RESELS=22.0803
    45. 

  45. 

  46. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat1 -c stats/cope1 -t 2.3 -p 0.05 -d 0.228356 --volume=64419 --othresh=thresh_zstat1 -o cluster_mask_zstat1 --connectivity=26 --mm --olmax=lmax_zstat1_std.txt --scalarname=Z > cluster_zstat1_std.txt
    47. 

  47. 

  48. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat1 -std
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  49. 

  50. /usr/share/fsl/5.0/bin/fslstats thresh_zstat1 -l 0.0001 -R 2>/dev/null
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  51. 0.000000 0.000000 
    52. 

  52. Rendering using zmin=2.3 zmax=8
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  53. 

  54. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat1 2.3 8 rendered_thresh_zstat1
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  55. 

  56. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat1 -S 2 750 rendered_thresh_zstat1.png
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  57. 

  58. /bin/cp /usr/share/fsl/5.0/etc/luts/ramp.gif .ramp.gif
    59. 

  59. </pre><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br></BODY></HTML>
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