Christian O. Häusler 761f1d1800 adjusted z threshold for audio (ind) to match threshold for movie (ind) 4 years ago
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.gitattributes 91729c1b4d Apply YODA dataset setup 4 years ago
1st-lvl_audio-ppa-grp.fsf d672c9bf7f add FSL design files (lvl 1-3) for audio (group) 4 years ago
1st-lvl_audio-ppa-ind.fsf 18856cad6f add FSL design files (lvl 1-2) for audio (individuals) 4 years ago
1st-lvl_movie-ppa-grp.fsf 0a41cbdef3 add FSL design files (lvl 1-3) for movie (group) 4 years ago
1st-lvl_movie-ppa-ind.fsf d6a7cd4da1 add FSL design files (lvl 1-2) for movie (individuals) 4 years ago
2nd-lvl_audio-ppa-grp.fsf d672c9bf7f add FSL design files (lvl 1-3) for audio (group) 4 years ago
2nd-lvl_audio-ppa-ind.fsf 761f1d1800 adjusted z threshold for audio (ind) to match threshold for movie (ind) 4 years ago
2nd-lvl_movie-ppa-grp.fsf 0a41cbdef3 add FSL design files (lvl 1-3) for movie (group) 4 years ago
2nd-lvl_movie-ppa-ind.fsf d6a7cd4da1 add FSL design files (lvl 1-2) for movie (individuals) 4 years ago
3rd-lvl_audio-ppa-grp-1.fsf d672c9bf7f add FSL design files (lvl 1-3) for audio (group) 4 years ago
3rd-lvl_audio-ppa-grp-10.fsf d672c9bf7f add FSL design files (lvl 1-3) for audio (group) 4 years ago
3rd-lvl_audio-ppa-grp-11.fsf d672c9bf7f add FSL design files (lvl 1-3) for audio (group) 4 years ago
3rd-lvl_audio-ppa-grp-12.fsf d672c9bf7f add FSL design files (lvl 1-3) for audio (group) 4 years ago
3rd-lvl_audio-ppa-grp-13.fsf d672c9bf7f add FSL design files (lvl 1-3) for audio (group) 4 years ago
3rd-lvl_audio-ppa-grp-2.fsf d672c9bf7f add FSL design files (lvl 1-3) for audio (group) 4 years ago
3rd-lvl_audio-ppa-grp-3.fsf d672c9bf7f add FSL design files (lvl 1-3) for audio (group) 4 years ago
3rd-lvl_audio-ppa-grp-4.fsf d672c9bf7f add FSL design files (lvl 1-3) for audio (group) 4 years ago
3rd-lvl_audio-ppa-grp-5.fsf d672c9bf7f add FSL design files (lvl 1-3) for audio (group) 4 years ago
3rd-lvl_audio-ppa-grp-6.fsf d672c9bf7f add FSL design files (lvl 1-3) for audio (group) 4 years ago
3rd-lvl_audio-ppa-grp-7.fsf d672c9bf7f add FSL design files (lvl 1-3) for audio (group) 4 years ago
3rd-lvl_audio-ppa-grp-8.fsf d672c9bf7f add FSL design files (lvl 1-3) for audio (group) 4 years ago
3rd-lvl_audio-ppa-grp-9.fsf d672c9bf7f add FSL design files (lvl 1-3) for audio (group) 4 years ago
3rd-lvl_movie-ppa-grp-1.fsf 0a41cbdef3 add FSL design files (lvl 1-3) for movie (group) 4 years ago
3rd-lvl_movie-ppa-grp-10.fsf 0a41cbdef3 add FSL design files (lvl 1-3) for movie (group) 4 years ago
3rd-lvl_movie-ppa-grp-2.fsf 0a41cbdef3 add FSL design files (lvl 1-3) for movie (group) 4 years ago
3rd-lvl_movie-ppa-grp-3.fsf 0a41cbdef3 add FSL design files (lvl 1-3) for movie (group) 4 years ago
3rd-lvl_movie-ppa-grp-4.fsf 0a41cbdef3 add FSL design files (lvl 1-3) for movie (group) 4 years ago
3rd-lvl_movie-ppa-grp-5.fsf 0a41cbdef3 add FSL design files (lvl 1-3) for movie (group) 4 years ago
3rd-lvl_movie-ppa-grp-6.fsf 0a41cbdef3 add FSL design files (lvl 1-3) for movie (group) 4 years ago
3rd-lvl_movie-ppa-grp-7.fsf 0a41cbdef3 add FSL design files (lvl 1-3) for movie (group) 4 years ago
3rd-lvl_movie-ppa-grp-8.fsf 0a41cbdef3 add FSL design files (lvl 1-3) for movie (group) 4 years ago
3rd-lvl_movie-ppa-grp-9.fsf 0a41cbdef3 add FSL design files (lvl 1-3) for movie (group) 4 years ago
README.md 1330dbfe82 Apply YODA dataset setup 4 years ago
compute_1st-lvl_audio-ppa-grp.submit a645f8cdb1 [DATALAD RUNCMD] for audio analysis (group), create individual 1st level design files 4 years ago
compute_1st-lvl_audio-ppa-ind.submit aaf2327bbd [DATALAD RUNCMD] for audio analysis (individuals), create individual 1st level design files 4 years ago
compute_1st-lvl_movie-ppa-grp.submit 24d3eb81eb [DATALAD RUNCMD] for movie analysis (group), create individual (1st level) design files 4 years ago
compute_1st-lvl_movie-ppa-ind.submit d61e684975 [DATALAD RUNCMD] for movie analysis (individuals), create individual 1st level design files 4 years ago
compute_2nd-lvl_audio-ppa-grp.submit 601c83b686 [DATALAD RUNCMD] for audio analysis (group), generate individual 2nd lvl design files from template 4 years ago
compute_2nd-lvl_audio-ppa-ind.submit d5e73a979d [DATALAD RUNCMD] for audio analysis (individuals), generate individual 2nd lvl design files from template 4 years ago
compute_2nd-lvl_movie-ppa-grp.submit 5c10c6bca5 [DATALAD RUNCMD] for movie analysis (group), generate individual 2nd lvl design files from template 4 years ago
compute_2nd-lvl_movie-ppa-ind.submit 9ece407eb2 [DATALAD RUNCMD] for movie analysis (individuals), generate individual 2nd lvl design files from template 4 years ago
compute_3rd-lvl_audio-ppa-grp.submit d672c9bf7f add FSL design files (lvl 1-3) for audio (group) 4 years ago
compute_3rd-lvl_movie-ppa-grp.submit 0a41cbdef3 add FSL design files (lvl 1-3) for movie (group) 4 years ago
condor-commands-for-cm.txt 34ebf04b91 3rd lvl results movie (group) 4 years ago
confounds2onsets.py ee49cc9fd1 add script that converts & copies confound files to onsets directories 4 years ago
generate_1st-lvl-design.py 88b028f12a add python script that creates individual (1st level) design files from templates 4 years ago
generate_2nd-lvl-design_audio-ppa-grp.sh d672c9bf7f add FSL design files (lvl 1-3) for audio (group) 4 years ago
generate_2nd-lvl-design_audio-ppa-ind.sh 18856cad6f add FSL design files (lvl 1-2) for audio (individuals) 4 years ago
generate_2nd-lvl-design_movie-ppa-grp.sh 0a41cbdef3 add FSL design files (lvl 1-3) for movie (group) 4 years ago
generate_2nd-lvl-design_movie-ppa-ind.sh d6a7cd4da1 add FSL design files (lvl 1-2) for movie (individuals) 4 years ago
locationsanno2onsets.py 55ba66503b add script that creates event files for FSL from the segmented location annotation 4 years ago
onsets2subfolders.py fbecc2edbb add script that creates subject directories and copies FSL event files into it 4 years ago
reg2std4feat a82e872bbd add script that add templates & transformation matrices to 1st lvl result directories of Feat 4 years ago
speechanno2onsets.py 8404a00f09 add script that creates event files for FSL from the segmented speech annotation 4 years ago

README.md

All custom code goes into this directory. All scripts should be written such that they can be executed from the root of the dataset, and are only using relative paths for portability.

datacite.yml
Title Processing of visual and non-visual naturalistic spatial information in the "parahippocampal place area": from raw data to results
Authors Häusler,Christian O.;Psychoinformatics Lab, Institute of Neuroscience and Medicine, Brain & Behaviour (INM-7), Research Centre Jülich, Jülich, Germany; Institute of Systems Neuroscience, Medical Faculty, Heinrich Heine University, Düsseldorf, Germany;ORCID:0000-0002-0936-317X
Eickhoff,Simon B.;Psychoinformatics Lab, Institute of Neuroscience and Medicine, Brain & Behaviour (INM-7), Research Centre Jülich, Jülich, Germany; Institute of Systems Neuroscience, Medical Faculty, Heinrich Heine University, Düsseldorf, Germany;ORCID:0000-0001-6363-2759
Hanke,Michael;Psychoinformatics Lab, Institute of Neuroscience and Medicine, Brain & Behaviour (INM-7), Research Centre Jülich, Jülich, Germany; Institute of Systems Neuroscience, Medical Faculty, Heinrich Heine University, Düsseldorf, Germany;ORCID:0000-0001-6398-6370
Description This repository contains the fMRI data, annotations, analysis scripts to generate the results, and results in Häusler C.O. & Hanke M. (submitted) as Datalad datasets (https://github.com/datalad).
License Creative Commons Attribution 4.0 International Public License (https://creativecommons.org/licenses/by/4.0/)
References Häusler, C. O. & Hanke, M. (2016). Dataset 1 in: An annotation of cuts, depicted locations, and temporal progression in the motion picture "Forrest Gump". F1000Research. [https://doi.org/10.5256/f1000research.9536.d134823] (IsReferencedBy)
Häusler, C. O., & Hanke, M. (2020). studyforrest-paper-speechannotation. OSF. [https://doi.org/10.17605/OSF.IO/GFRME] (IsReferencedBy)
Hanke, M., Baumgartner, F.J., Ibe, P., Kaule, F.K., Pollmann; S., Speck, O., Zinke, W., & Stadler, J. (2014). A high-resolution 7-Tesla fMRI dataset from complex natural stimulation with an audio movie. OpenfMRI. [https://legacy.openfmri.org/dataset/ds000113] (IsReferencedBy)
Hanke, M., Kottke, D., Iacovella, V., Hoffmann, M.B., Sengupta, A., Kaule, F.R., Häusler, C., Guntupalli, S.J., Baumgartner, F.J., & Stadler, J. (2016). Simultaneous fMRI/eyetracking while movie watching, plus visual localizers. OpenfMRI. [https://legacy.openfmri.org/dataset/ds000113d] (IsReferencedBy)
Hanke, M. (2016). studyforrest.org Dataset. Pre-aligned MRI data. GitHub. [https://github.com/psychoinformatics-de/studyforrest-data-aligned] (IsReferencedBy)
Sengupta, A., Kaule, F.R., Guntupalli, S.J., Hoffmann, M.B., Häusler, C., Sadler, J., & Hanke, M. (2016). studyforrest.org Dataset. Localization of higher-level visual ROIs. GitHub. [https://github.com/psychoinformatics-de/studyforrest-data-visualrois] (IsReferencedBy)
Hanke, M. (2016). studyforrest.org Dataset. Reconstruction of cortical surfaces. GitHub. [https://github.com/psychoinformatics-de/studyforrest-data-freesurfer] (IsReferencedBy)
Funding BMBF, 01GQ1112
NSF, 1129855
Keywords fMRI
naturalistic stimulus
spatial perception
vision
language
speech
narrative
studyforrest
datalad
Resource Type Dataset