report_log.html 90 KB

123456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778798081828384858687888990919293949596979899100101102103104105106107108109110111112113114115116117118119120121122123124125126127128129130131132133134135136137138139140141142143144145146147148149150151152153154155156157158159160161162163164165166167168169170171172173174175176177178179180181182183184185186187188189190191192193194195196197198199200201202203204205206207208209210211212213214215216217218219220221222223224225226227228229230231232233234235236237238239240241242243244245246247248249250251252253254255256257258259260261262263264265266267268269270271272273274275276277278279280281282283284285286287288289290291292293294295296297298299300301302303304305306307308309310311312313314315316317318319320321322323324325326327328329330331332333334335336337338339340341342343344345346347348349350351352353354355356357358359360361362363364365366367368369370371372373374375376377378379380381382383384385386387388389390391392393394395396397398399400401402403404405406407408409410411412413414415416417418419420421422423424425426427428429430431432433434435436437438439440441442443444445446447448449450451452453454455456457458459460461462463464465466467468469470471472473474475476477478479480481482483484485486487488489490491492493494495496497498499500501502503504505506507508509510511512513514515516517518519520521522523524525526527528529530531532533534535536537538539540541542543544545546547548549550551552553554555556557558559560561562563564565566567568569570571572573574575576577578579580581582583584585586587588589590591592593594595596597598599600601602603604605606607608609610611612613614615616617618619620621622623624625626627628629630631632633634635636637638639640641642643644645646647648649650651652653654655656657658659660661662663664665666667668669670671672673674675676677678679680681682683684685686687688689690691692693694695696697698699700701702703704705706707708709710711712713714715716717718719720721722723724725726727728729730731732733734735736737738739740741742743744745746747748749750751752753754755756757758759760761762763764765766767768769770771772773774775776777778779780781782783784785786787788789790791792793794795796797798799800801802803804805806807808809810811812813814815816817818819820821822823824825826827828829830831832833834835836837838839840841842843844845846847848849850851852853854855856857858859860861862863864865866867868869870871872873874875876877878879880881882883884885886887888889890891892893894895896897898899900901902903904905906907908909910911912913914915916917918919920921922923924925926927928929930931932933934935936937938939940941942943944945946947948949950951952953954955956957958959960961962963964965966967968969970971972973974975976977978979980981982983984985986987988989990991992993994995996997998999100010011002100310041005100610071008100910101011101210131014101510161017101810191020102110221023102410251026102710281029103010311032103310341035103610371038103910401041104210431044104510461047104810491050105110521053105410551056105710581059106010611062106310641065106610671068106910701071107210731074107510761077107810791080108110821083108410851086
  1. <HTML><HEAD>
  2. <!--refreshstart-->
  3. <!--refreshstop-->
  4. <link REL=stylesheet TYPE=text/css href=.files/fsl.css>
  5. <TITLE>FSL</TITLE></HEAD><BODY><OBJECT data=report.html></OBJECT>
  6. <h2>Progress Report / Log</h2>
  7. Started at Thu 19 Mar 2020 06:58:04 AM CET<p>
  8. Feat main script<br><pre>
  9. /bin/cp /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.fsf design.fsf
  10. /usr/share/fsl/5.0/bin/feat_model design
  11. mkdir .files;cp /usr/share/fsl/5.0/doc/fsl.css .files;cp -r /usr/share/fsl/5.0/doc/images .files/images
  12. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat2_pre /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat -gfeatprep
  13. 2392
  14. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 2392 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope1.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope1.feat -I 1 -flame1
  15. 9319
  16. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 9319 -t ./.flame
  17. 12884
  18. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 12884 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope1.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope1.feat -flame3
  19. 16543
  20. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 16543 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope1.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope1.feat -poststats 1
  21. 17003
  22. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 17003 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope1.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope1.feat -stop
  23. 21337
  24. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 2392 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope2.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope2.feat -I 2 -flame1
  25. 23762
  26. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 23762 -t ./.flame
  27. 27041
  28. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 27041 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope2.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope2.feat -flame3
  29. 31267
  30. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 31267 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope2.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope2.feat -poststats 1
  31. 32296
  32. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 32296 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope2.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope2.feat -stop
  33. 4742
  34. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 2392 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope3.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope3.feat -I 3 -flame1
  35. 7053
  36. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 7053 -t ./.flame
  37. 9741
  38. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 9741 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope3.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope3.feat -flame3
  39. 13944
  40. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 13944 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope3.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope3.feat -poststats 1
  41. 14849
  42. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 14849 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope3.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope3.feat -stop
  43. 20547
  44. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 2392 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope4.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope4.feat -I 4 -flame1
  45. 22692
  46. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 22692 -t ./.flame
  47. 24614
  48. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 24614 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope4.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope4.feat -flame3
  49. 29291
  50. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 29291 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope4.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope4.feat -poststats 1
  51. 30055
  52. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 30055 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope4.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope4.feat -stop
  53. 4240
  54. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 2392 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope5.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope5.feat -I 5 -flame1
  55. 5623
  56. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 5623 -t ./.flame
  57. 7253
  58. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 7253 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope5.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope5.feat -flame3
  59. 12825
  60. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 12825 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope5.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope5.feat -poststats 1
  61. 13604
  62. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 13604 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope5.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope5.feat -stop
  63. 20073
  64. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 2392 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope6.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope6.feat -I 6 -flame1
  65. 21204
  66. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 21204 -t ./.flame
  67. 22843
  68. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 22843 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope6.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope6.feat -flame3
  69. 28278
  70. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 28278 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope6.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope6.feat -poststats 1
  71. 29017
  72. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 29017 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope6.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope6.feat -stop
  73. 2924
  74. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 2392 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope7.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope7.feat -I 7 -flame1
  75. 3781
  76. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 3781 -t ./.flame
  77. 5420
  78. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 5420 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope7.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope7.feat -flame3
  79. 11922
  80. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 11922 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope7.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope7.feat -poststats 1
  81. 12680
  82. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 12680 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope7.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope7.feat -stop
  83. 18259
  84. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 2392 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope8.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope8.feat -I 8 -flame1
  85. 19123
  86. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 19123 -t ./.flame
  87. 20901
  88. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 20901 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope8.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope8.feat -flame3
  89. 27376
  90. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 27376 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope8.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope8.feat -poststats 1
  91. 28536
  92. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 28536 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope8.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope8.feat -stop
  93. 968
  94. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 2392 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope9.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope9.feat -I 9 -flame1
  95. 2014
  96. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 2014 -t ./.flame
  97. 4004
  98. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 4004 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope9.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope9.feat -flame3
  99. 10636
  100. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 10636 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope9.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope9.feat -poststats 1
  101. 11708
  102. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 11708 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope9.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope9.feat -stop
  103. 16333
  104. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 2392 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat -I 10 -flame1
  105. 17460
  106. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 17460 -t ./.flame
  107. 19418
  108. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 19418 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat -flame3
  109. 24703
  110. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 24703 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat -poststats 1
  111. 25449
  112. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 25449 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat -stop
  113. 29233
  114. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 21337,4742,20547,4240,20073,2924,18259,968,16333,29233 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-ind.gfeat -stop
  115. </pre><hr>Higher-level input files preparation<br><pre>
  116. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat
  117. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_ohDh0o -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
  118. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_4jPhtP -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
  119. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_L6PKAi -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  120. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_ChNo0u -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  121. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_qPS0VH -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  122. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_9lXYaX -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  123. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_OG32iY -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  124. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_IFgpoe -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  125. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_O1GZIp -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  126. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_FsRKNB -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  127. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_FkXAgR -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  128. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_aM2Bs2 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  129. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_Qws2m6 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  130. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_1fWbkm -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  131. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_s4dROx -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  132. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_LBGbCK -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  133. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_NPCNsY -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  134. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_879r32 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  135. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_7fpNbj -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  136. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_MsdNEx -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  137. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_DS1MGK -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  138. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_jjMSVU -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  139. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_B7KTCa -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
  140. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat
  141. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_vylR5g -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
  142. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_A21iJN -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
  143. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_c8IfYh -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  144. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_emJMKl -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  145. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_Y2Jdww -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  146. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_4g0gmM -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  147. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_mLXO3X -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  148. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_XeaE3c -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  149. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_otYgOg -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  150. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_FjV5lt -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  151. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_Smg1LI -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  152. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_Y1BaTT -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  153. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_xdTl59 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  154. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_8x86cl -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  155. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_QaIzup -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  156. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_Z5LIJB -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  157. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_INbSJR -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  158. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_6kNTj4 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  159. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_BP6oAi -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  160. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_pBdtXm -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  161. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_C17YVy -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  162. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_R7E0kK -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  163. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_JbXr2Y -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
  164. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat
  165. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_YB9Gmh -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
  166. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_KBOCxz -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
  167. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_1ItKg4 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  168. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_rlhQlg -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  169. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_PRXZvs -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  170. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_YiCt8v -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  171. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_PmCLgK -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  172. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_eh2BsZ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  173. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_2W5XIf -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  174. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_lu5tYt -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  175. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_S33hyy -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  176. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_H7YZ9I -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  177. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_2oOy7Z -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  178. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_oI3glb -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  179. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_5oQLqp -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  180. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_IXoBiF -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  181. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_ZYMfdJ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  182. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_iH2FtU -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  183. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_zCCTeb -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  184. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_aiEyHj -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  185. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_vt74cz -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  186. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_8qxJ0D -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  187. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_7AnOdS -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
  188. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat
  189. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_FTeiy6 -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
  190. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_iJn3pz -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
  191. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_lbB5pQ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  192. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_Eg9kw2 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  193. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_hyeYBi -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  194. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_Qa98Ft -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  195. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_px234H -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  196. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_OPBGfQ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  197. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_zBqiu4 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  198. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_qcv9Eg -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  199. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_luFARs -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  200. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_RDHYTH -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  201. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_tcJl4T -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  202. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_A8tZ0X -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  203. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_jcilaa -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  204. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_7dDl1p -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  205. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_iL23uB -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  206. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_2vvOUQ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  207. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_plcY7R -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  208. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_0BDj53 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  209. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_hYQt9l -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  210. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_mmQegx -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  211. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_SfK4TL -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
  212. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat
  213. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_u94dfW -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
  214. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_gwKI7r -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
  215. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_NLG4fS -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  216. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_guqrE4 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  217. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_bxOCwa -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  218. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_6uSkMm -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  219. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_97z4Vx -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  220. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_tu5E2M -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  221. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_mSkrb2 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  222. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_rJeeP6 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  223. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_B1VVuh -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  224. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_NSNW1x -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  225. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_zBtRaM -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  226. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_wL2i6X -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  227. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_iu404d -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  228. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_1wRSge -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  229. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_0CeEBt -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  230. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_UXAALI -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  231. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_sgmODX -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  232. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_KWzUl8 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  233. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_elpJSc -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  234. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_L22RPo -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  235. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_8z1TZD -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
  236. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat
  237. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_fwNfTV -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
  238. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_o8rVik -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
  239. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_vnCSeK -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  240. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_suDhLW -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  241. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_hM5o68 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  242. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_Q3hLtp -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  243. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_QjmuIr -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  244. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_U2iApI -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  245. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_E3wBFS -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  246. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_ApDes8 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  247. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_YYoysn -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  248. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_QtgaSr -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  249. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_6gn0UC -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  250. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_xT81aP -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  251. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_51nHV1 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  252. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_eZe30g -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  253. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_esp0Xw -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  254. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_4n856A -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  255. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_YnvVKL -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  256. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_ideOkY -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  257. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_WU0Z39 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  258. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_ynJ2qq -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  259. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_z33cCu -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
  260. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat
  261. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_mgWdkK -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
  262. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_VHBwlh -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
  263. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_V6jp0A -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  264. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_vbVgvN -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  265. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_EzFcrW -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  266. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_nvWOyb -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  267. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_UW8xEk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  268. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_wpTr6y -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  269. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_edpuTC -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  270. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_3lhaQS -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  271. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_6EZPZ7 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  272. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_t1xcPj -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  273. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_P7ZIYv -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  274. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_1ckUTL -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  275. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_XtUSgP -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  276. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_mGywb4 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  277. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_TqOdGf -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  278. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_ROFVew -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  279. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_jo4jRK -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  280. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_Qn5YqL -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  281. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_drAWwX -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  282. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_4rHl4c -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  283. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_dq9K3n -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
  284. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat
  285. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_JlR3vF -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
  286. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_QHRnT0 -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
  287. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_Z0B90r -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  288. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_8oWuaG -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  289. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_C3Yu8U -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  290. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_yaQkvU -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  291. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_Bjczt9 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  292. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_bTrR8l -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  293. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_4fLLJB -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  294. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_sq7j9N -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  295. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_5fXrl0 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  296. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_onrZw4 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  297. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_kyklIg -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  298. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_Lv88xs -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  299. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_tk1lRH -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  300. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_40BW8W -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  301. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_qZSdU0 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  302. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_ngphMc -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  303. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_ZRh8Rs -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  304. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_B4zWZG -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  305. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_wmBh2R -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  306. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_H98XP6 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  307. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_mlBp0d -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
  308. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg/standard bg_image
  309. /usr/share/fsl/5.0/bin/fslmerge -t mask /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/mask
  310. mkdir -p inputreg
  311. /usr/share/fsl/5.0/bin/fslmaths ../mask -mul 8 -Tmean masksum -odt short
  312. /usr/share/fsl/5.0/bin/fslmaths masksum -thr 8 -add masksum masksum
  313. /usr/share/fsl/5.0/bin/overlay 0 0 -c ../bg_image -a masksum 0.9 16 masksum_overlay
  314. /usr/share/fsl/5.0/bin/slicer masksum_overlay -S 2 750 masksum_overlay.png
  315. /usr/share/fsl/5.0/bin/fslmaths masksum -mul 0 maskunique
  316. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 1 -add maskunique maskunique
  317. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 2 -add maskunique maskunique
  318. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 3 -add maskunique maskunique
  319. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 4 -add maskunique maskunique
  320. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 5 -add maskunique maskunique
  321. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 6 -add maskunique maskunique
  322. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 7 -add maskunique maskunique
  323. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 8 -add maskunique maskunique
  324. /usr/share/fsl/5.0/bin/fslmaths masksum -thr 7 -uthr 7 -bin -mul maskunique maskunique
  325. /usr/share/fsl/5.0/bin/overlay 0 0 ../bg_image -a maskunique 0.9 8 maskunique_overlay
  326. /usr/share/fsl/5.0/bin/slicer maskunique_overlay -S 2 750 maskunique_overlay.png
  327. /bin/cp /usr/share/fsl/5.0/etc/luts/ramp.gif .ramp.gif
  328. /usr/share/fsl/5.0/bin/fslmaths mask -Tmin mask
  329. /usr/share/fsl/5.0/bin/fslmerge -t mean_func /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/mean_func
  330. /usr/share/fsl/5.0/bin/fslmaths mean_func -Tmean mean_func
  331. /usr/share/fsl/5.0/bin/fslmerge -t cope1 /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/cope1
  332. /usr/share/fsl/5.0/bin/fslmaths cope1 -mas mask cope1
  333. printf '0.055862131249999995 ' >> design.lcon
  334. /usr/share/fsl/5.0/bin/fslmerge -t varcope1 /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope1
  335. /usr/share/fsl/5.0/bin/fslmaths varcope1 -mas mask varcope1
  336. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 417 /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1
  337. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 407 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1
  338. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 404 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1
  339. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 454 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1
  340. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 428 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1
  341. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 405 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1
  342. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 508 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1
  343. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 304 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1
  344. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t1 /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1
  345. /usr/share/fsl/5.0/bin/fslmaths tdof_t1 -mas mask tdof_t1
  346. /usr/share/fsl/5.0/bin/fslmerge -t cope2 /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/cope2
  347. /usr/share/fsl/5.0/bin/fslmaths cope2 -mas mask cope2
  348. printf '0.039057305 ' >> design.lcon
  349. /usr/share/fsl/5.0/bin/fslmerge -t varcope2 /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope2
  350. /usr/share/fsl/5.0/bin/fslmaths varcope2 -mas mask varcope2
  351. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 417 /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2
  352. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 407 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2
  353. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 404 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2
  354. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 454 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2
  355. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 428 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2
  356. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 405 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2
  357. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 508 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2
  358. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 304 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2
  359. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t2 /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2
  360. /usr/share/fsl/5.0/bin/fslmaths tdof_t2 -mas mask tdof_t2
  361. /usr/share/fsl/5.0/bin/fslmerge -t cope3 /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/cope3
  362. /usr/share/fsl/5.0/bin/fslmaths cope3 -mas mask cope3
  363. printf '0.04635069625 ' >> design.lcon
  364. /usr/share/fsl/5.0/bin/fslmerge -t varcope3 /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope3
  365. /usr/share/fsl/5.0/bin/fslmaths varcope3 -mas mask varcope3
  366. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 417 /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3
  367. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 407 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3
  368. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 404 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3
  369. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 454 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3
  370. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 428 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3
  371. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 405 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3
  372. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 508 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3
  373. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 304 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3
  374. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t3 /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3
  375. /usr/share/fsl/5.0/bin/fslmaths tdof_t3 -mas mask tdof_t3
  376. /usr/share/fsl/5.0/bin/fslmerge -t cope4 /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/cope4
  377. /usr/share/fsl/5.0/bin/fslmaths cope4 -mas mask cope4
  378. printf '0.02917094875 ' >> design.lcon
  379. /usr/share/fsl/5.0/bin/fslmerge -t varcope4 /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope4
  380. /usr/share/fsl/5.0/bin/fslmaths varcope4 -mas mask varcope4
  381. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 417 /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4
  382. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 407 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4
  383. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 404 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4
  384. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 454 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4
  385. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 428 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4
  386. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 405 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4
  387. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 508 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4
  388. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 304 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4
  389. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t4 /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4
  390. /usr/share/fsl/5.0/bin/fslmaths tdof_t4 -mas mask tdof_t4
  391. /usr/share/fsl/5.0/bin/fslmerge -t cope5 /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/cope5
  392. /usr/share/fsl/5.0/bin/fslmaths cope5 -mas mask cope5
  393. printf '0.039307255000000006 ' >> design.lcon
  394. /usr/share/fsl/5.0/bin/fslmerge -t varcope5 /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope5
  395. /usr/share/fsl/5.0/bin/fslmaths varcope5 -mas mask varcope5
  396. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 417 /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5
  397. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 407 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5
  398. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 404 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5
  399. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 454 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5
  400. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 428 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5
  401. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 405 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5
  402. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 508 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5
  403. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 304 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5
  404. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t5 /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5
  405. /usr/share/fsl/5.0/bin/fslmaths tdof_t5 -mas mask tdof_t5
  406. /usr/share/fsl/5.0/bin/fslmerge -t cope6 /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/cope6
  407. /usr/share/fsl/5.0/bin/fslmaths cope6 -mas mask cope6
  408. printf '0.047837505 ' >> design.lcon
  409. /usr/share/fsl/5.0/bin/fslmerge -t varcope6 /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope6
  410. /usr/share/fsl/5.0/bin/fslmaths varcope6 -mas mask varcope6
  411. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 417 /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6
  412. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 407 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6
  413. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 404 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6
  414. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 454 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6
  415. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 428 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6
  416. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 405 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6
  417. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 508 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6
  418. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 304 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6
  419. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t6 /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6
  420. /usr/share/fsl/5.0/bin/fslmaths tdof_t6 -mas mask tdof_t6
  421. /usr/share/fsl/5.0/bin/fslmerge -t cope7 /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/cope7
  422. /usr/share/fsl/5.0/bin/fslmaths cope7 -mas mask cope7
  423. printf '0.04449975125 ' >> design.lcon
  424. /usr/share/fsl/5.0/bin/fslmerge -t varcope7 /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope7
  425. /usr/share/fsl/5.0/bin/fslmaths varcope7 -mas mask varcope7
  426. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 417 /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7
  427. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 407 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7
  428. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 404 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7
  429. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 454 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7
  430. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 428 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7
  431. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 405 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7
  432. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 508 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7
  433. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 304 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7
  434. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t7 /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7
  435. /usr/share/fsl/5.0/bin/fslmaths tdof_t7 -mas mask tdof_t7
  436. /usr/share/fsl/5.0/bin/fslmerge -t cope8 /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/cope8
  437. /usr/share/fsl/5.0/bin/fslmaths cope8 -mas mask cope8
  438. printf '0.026386558749999997 ' >> design.lcon
  439. /usr/share/fsl/5.0/bin/fslmerge -t varcope8 /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope8
  440. /usr/share/fsl/5.0/bin/fslmaths varcope8 -mas mask varcope8
  441. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 417 /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8
  442. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 407 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8
  443. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 404 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8
  444. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 454 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8
  445. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 428 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8
  446. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 405 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8
  447. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 508 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8
  448. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 304 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8
  449. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t8 /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8
  450. /usr/share/fsl/5.0/bin/fslmaths tdof_t8 -mas mask tdof_t8
  451. /usr/share/fsl/5.0/bin/fslmerge -t cope9 /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/cope9
  452. /usr/share/fsl/5.0/bin/fslmaths cope9 -mas mask cope9
  453. printf '0.026212181249999997 ' >> design.lcon
  454. /usr/share/fsl/5.0/bin/fslmerge -t varcope9 /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope9
  455. /usr/share/fsl/5.0/bin/fslmaths varcope9 -mas mask varcope9
  456. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 417 /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9
  457. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 407 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9
  458. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 404 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9
  459. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 454 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9
  460. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 428 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9
  461. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 405 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9
  462. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 508 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9
  463. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 304 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9
  464. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t9 /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9
  465. /usr/share/fsl/5.0/bin/fslmaths tdof_t9 -mas mask tdof_t9
  466. /usr/share/fsl/5.0/bin/fslmerge -t cope10 /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/cope10
  467. /usr/share/fsl/5.0/bin/fslmaths cope10 -mas mask cope10
  468. printf '0.09046142875000002 ' >> design.lcon
  469. /usr/share/fsl/5.0/bin/fslmerge -t varcope10 /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope10
  470. /usr/share/fsl/5.0/bin/fslmaths varcope10 -mas mask varcope10
  471. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 417 /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10
  472. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 407 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10
  473. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 404 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10
  474. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 454 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10
  475. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 428 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10
  476. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 405 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10
  477. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 508 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10
  478. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 304 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10
  479. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t10 /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10
  480. /usr/share/fsl/5.0/bin/fslmaths tdof_t10 -mas mask tdof_t10
  481. </pre><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br></BODY></HTML>