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- <h2>Progress Report / Log</h2>
- Started at Thu 19 Mar 2020 10:40:20 AM CET<p>
- <pre>
- cp -r ../.files .files
- </pre><hr>Higher-level stats<br><pre>
- cat ../design.lcon | awk '{ print }' > design.lcon
- /usr/share/fsl/5.0/bin/flameo --cope=filtered_func_data --vc=var_filtered_func_data --dvc=tdof_filtered_func_data --mask=mask --ld=stats --dm=design.mat --cs=design.grp --tc=design.con --runmode=fe
- Log directory is: stats
- Setting up:
- ntptsing=8.000000
- evs_group=1.000000
- No f contrasts
- WARNING: The passed in varcope file, var_filtered_func_data, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
- nevs=1
- ntpts=8
- ngs=1
- nvoxels=67406
- Running:
- nmaskvoxels=67406
- 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
- Saving results
- Log directory was: stats
- /bin/rm -f stats/zem* stats/zols* stats/mask* ; /bin/mv dof stats
- /usr/share/fsl/5.0/bin/smoothest -d 7 -m mask -r stats/res4d > stats/smoothness
- </pre><hr>Post-stats<br><pre>
- /usr/share/fsl/5.0/bin/fslmaths stats/zstat1 -mas mask thresh_zstat1
- echo 67406 > thresh_zstat1.vol
- zstat1: DLH=0.238132 VOLUME=67406 RESELS=21.1738
- /usr/share/fsl/5.0/bin/cluster -i thresh_zstat1 -c stats/cope1 -t 2.3 -p 0.05 -d 0.238132 --volume=67406 --othresh=thresh_zstat1 -o cluster_mask_zstat1 --connectivity=26 --mm --olmax=lmax_zstat1_std.txt --scalarname=Z > cluster_zstat1_std.txt
- /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat1 -std
- /usr/share/fsl/5.0/bin/fslstats thresh_zstat1 -l 0.0001 -R 2>/dev/null
- 2.301050 6.521548
- Rendering using zmin=2.301050 zmax=6.521548
- /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat1 2.301050 6.521548 rendered_thresh_zstat1
- /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat1 -S 2 750 rendered_thresh_zstat1.png
- /bin/cp /usr/share/fsl/5.0/etc/luts/ramp.gif .ramp.gif
- </pre><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br></BODY></HTML>
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