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feat2_pre

feat2_pre 80 KB
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  1. </pre><hr>Higher-level input files preparation<br><pre>
    2. 

  2. 

  3. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat
    4. 

  4. 

  5. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=example_func --out=frgrot_R9aLx1 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline
    6. 

  6. 

  7. 

  8. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mean_func --out=frgrot_3qZHgB --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline
    9. 

  9. 

  10. 

  11. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope1 --out=frgrot_BBlCNj --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    12. 

  12. 

  13. 

  14. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope10 --out=frgrot_s4dBTu --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    15. 

  15. 

  16. 

  17. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope2 --out=frgrot_VKHu6R --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    18. 

  18. 

  19. 

  20. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope3 --out=frgrot_JNkQ1a --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    21. 

  21. 

  22. 

  23. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope4 --out=frgrot_zL9RBw --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    24. 

  24. 

  25. 

  26. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope5 --out=frgrot_mwo3zL --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    27. 

  27. 

  28. 

  29. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope6 --out=frgrot_O8DGY5 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    30. 

  30. 

  31. 

  32. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope7 --out=frgrot_tkNPeo --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    33. 

  33. 

  34. 

  35. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope8 --out=frgrot_w2M29A --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    36. 

  36. 

  37. 

  38. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope9 --out=frgrot_Z3yk1T --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    39. 

  39. 

  40. 

  41. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope1 --out=frgrot_X8T7kd --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    42. 

  42. 

  43. 

  44. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope10 --out=frgrot_p9W8fA --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    45. 

  45. 

  46. 

  47. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope2 --out=frgrot_VVxoJI --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    48. 

  48. 

  49. 

  50. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope3 --out=frgrot_ZQVff6 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    51. 

  51. 

  52. 

  53. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope4 --out=frgrot_NUBYNo --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    54. 

  54. 

  55. 

  56. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope5 --out=frgrot_wvhxzK --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    57. 

  57. 

  58. 

  59. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope6 --out=frgrot_64yvpW --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    60. 

  60. 

  61. 

  62. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope7 --out=frgrot_iO3Ekm --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    63. 

  63. 

  64. 

  65. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope8 --out=frgrot_PdE6LE --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    66. 

  66. 

  67. 

  68. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope9 --out=frgrot_OGdFRT --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    69. 

  69. 

  70. 

  71. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mask --out=frgrot_epcwxf --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=nn
    72. 

  72. 

  73. 

  74. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat
    75. 

  75. 

  76. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=example_func --out=frgrot_JaKy1A --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline
    77. 

  77. 

  78. 

  79. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mean_func --out=frgrot_Ho706h --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline
    80. 

  80. 

  81. 

  82. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope1 --out=frgrot_rvqjk2 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    83. 

  83. 

  84. 

  85. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope10 --out=frgrot_Amg2jc --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    86. 

  86. 

  87. 

  88. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope2 --out=frgrot_rLlitz --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    89. 

  89. 

  90. 

  91. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope3 --out=frgrot_ttdaOT --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    92. 

  92. 

  93. 

  94. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope4 --out=frgrot_Ntiuq3 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    95. 

  95. 

  96. 

  97. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope5 --out=frgrot_LMLcRq --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    98. 

  98. 

  99. 

  100. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope6 --out=frgrot_yQLz6K --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    101. 

  101. 

  102. 

  103. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope7 --out=frgrot_K96o16 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    104. 

  104. 

  105. 

  106. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope8 --out=frgrot_TOpBRi --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    107. 

  107. 

  108. 

  109. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope9 --out=frgrot_swd6GA --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    110. 

  110. 

  111. 

  112. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope1 --out=frgrot_PwERaV --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    113. 

  113. 

  114. 

  115. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope10 --out=frgrot_236gQ6 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    116. 

  116. 

  117. 

  118. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope2 --out=frgrot_GQh2lt --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    119. 

  119. 

  120. 

  121. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope3 --out=frgrot_7iYPfM --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    122. 

  122. 

  123. 

  124. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope4 --out=frgrot_vaAhk6 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    125. 

  125. 

  126. 

  127. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope5 --out=frgrot_3MZL1k --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    128. 

  128. 

  129. 

  130. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope6 --out=frgrot_5Si4lE --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    131. 

  131. 

  132. 

  133. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope7 --out=frgrot_yaq310 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    134. 

  134. 

  135. 

  136. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope8 --out=frgrot_yfLAic --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    137. 

  137. 

  138. 

  139. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope9 --out=frgrot_Npxmyw --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    140. 

  140. 

  141. 

  142. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mask --out=frgrot_wK42vR --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=nn
    143. 

  143. 

  144. 

  145. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat
    146. 

  146. 

  147. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=example_func --out=frgrot_w8rU3j --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline
    148. 

  148. 

  149. 

  150. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mean_func --out=frgrot_uxD9zS --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline
    151. 

  151. 

  152. 

  153. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope1 --out=frgrot_RvucHq --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    154. 

  154. 

  155. 

  156. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope10 --out=frgrot_Xe1blN --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    157. 

  157. 

  158. 

  159. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope2 --out=frgrot_RgF045 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    160. 

  160. 

  161. 

  162. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope3 --out=frgrot_fQB8ts --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    163. 

  163. 

  164. 

  165. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope4 --out=frgrot_In7VDF --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    166. 

  166. 

  167. 

  168. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope5 --out=frgrot_9MxQfY --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    169. 

  169. 

  170. 

  171. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope6 --out=frgrot_AbmcDl --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    172. 

  172. 

  173. 

  174. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope7 --out=frgrot_6vFufx --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    175. 

  175. 

  176. 

  177. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope8 --out=frgrot_s38aJS --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    178. 

  178. 

  179. 

  180. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope9 --out=frgrot_pRJZMf --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    181. 

  181. 

  182. 

  183. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope1 --out=frgrot_W0T9ux --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    184. 

  184. 

  185. 

  186. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope10 --out=frgrot_cWwjzK --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    187. 

  187. 

  188. 

  189. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope2 --out=frgrot_CBl4U2 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    190. 

  190. 

  191. 

  192. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope3 --out=frgrot_RJNSim --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    193. 

  193. 

  194. 

  195. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope4 --out=frgrot_FbrR0x --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    196. 

  196. 

  197. 

  198. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope5 --out=frgrot_UASx6T --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    199. 

  199. 

  200. 

  201. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope6 --out=frgrot_AzMjpi --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    202. 

  202. 

  203. 

  204. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope7 --out=frgrot_cumN3A --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    205. 

  205. 

  206. 

  207. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope8 --out=frgrot_Bw6evM --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    208. 

  208. 

  209. 

  210. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope9 --out=frgrot_QCbJp8 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    211. 

  211. 

  212. 

  213. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mask --out=frgrot_21CToy --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=nn
    214. 

  214. 

  215. 

  216. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat
    217. 

  217. 

  218. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=example_func --out=frgrot_j1HIMI --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline
    219. 

  219. 

  220. 

  221. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mean_func --out=frgrot_5fIMPq --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline
    222. 

  222. 

  223. 

  224. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope1 --out=frgrot_nS1c1X --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    225. 

  225. 

  226. 

  227. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope10 --out=frgrot_Nck3Kl --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    228. 

  228. 

  229. 

  230. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope2 --out=frgrot_B1RwbC --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    231. 

  231. 

  232. 

  233. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope3 --out=frgrot_K9RNSQ --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    234. 

  234. 

  235. 

  236. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope4 --out=frgrot_jPPf1a --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    237. 

  237. 

  238. 

  239. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope5 --out=frgrot_HjXrUt --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    240. 

  240. 

  241. 

  242. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope6 --out=frgrot_fK2jAQ --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    243. 

  243. 

  244. 

  245. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope7 --out=frgrot_o4BrgY --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    246. 

  246. 

  247. 

  248. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope8 --out=frgrot_mkNoOi --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    249. 

  249. 

  250. 

  251. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope9 --out=frgrot_Z7sjbG --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    252. 

  252. 

  253. 

  254. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope1 --out=frgrot_Jylaj2 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    255. 

  255. 

  256. 

  257. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope10 --out=frgrot_Qfr3cd --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    258. 

  258. 

  259. 

  260. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope2 --out=frgrot_HDewPv --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    261. 

  261. 

  262. 

  263. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope3 --out=frgrot_bjLAeQ --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    264. 

  264. 

  265. 

  266. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope4 --out=frgrot_h2Y320 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    267. 

  267. 

  268. 

  269. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope5 --out=frgrot_VfxRNo --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    270. 

  270. 

  271. 

  272. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope6 --out=frgrot_OyugGH --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    273. 

  273. 

  274. 

  275. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope7 --out=frgrot_IynWm3 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    276. 

  276. 

  277. 

  278. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope8 --out=frgrot_PlCLMe --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    279. 

  279. 

  280. 

  281. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope9 --out=frgrot_jB4edB --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    282. 

  282. 

  283. 

  284. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mask --out=frgrot_HjGlLX --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=nn
    285. 

  285. 

  286. 

  287. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat
    288. 

  288. 

  289. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=example_func --out=frgrot_GBxgme --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline
    290. 

  290. 

  291. 

  292. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mean_func --out=frgrot_Kt0vNX --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline
    293. 

  293. 

  294. 

  295. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope1 --out=frgrot_1hA4uu --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    296. 

  296. 

  297. 

  298. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope10 --out=frgrot_I3eb5M --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    299. 

  299. 

  300. 

  301. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope2 --out=frgrot_Jvchza --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    302. 

  302. 

  303. 

  304. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope3 --out=frgrot_zEMtki --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    305. 

  305. 

  306. 

  307. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope4 --out=frgrot_YfzSUC --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    308. 

  308. 

  309. 

  310. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope5 --out=frgrot_1k58tZ --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    311. 

  311. 

  312. 

  313. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope6 --out=frgrot_jkXd2j --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    314. 

  314. 

  315. 

  316. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope7 --out=frgrot_QRvpOu --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    317. 

  317. 

  318. 

  319. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope8 --out=frgrot_ihFVvN --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    320. 

  320. 

  321. 

  322. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope9 --out=frgrot_j0LMG7 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    323. 

  323. 

  324. 

  325. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope1 --out=frgrot_TpPp9l --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    326. 

  326. 

  327. 

  328. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope10 --out=frgrot_wN4oNF --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    329. 

  329. 

  330. 

  331. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope2 --out=frgrot_HdEv01 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    332. 

  332. 

  333. 

  334. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope3 --out=frgrot_UGATvn --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    335. 

  335. 

  336. 

  337. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope4 --out=frgrot_OZn1wz --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    338. 

  338. 

  339. 

  340. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope5 --out=frgrot_tykHRU --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    341. 

  341. 

  342. 

  343. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope6 --out=frgrot_FeeCtf --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    344. 

  344. 

  345. 

  346. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope7 --out=frgrot_CeXXQC --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    347. 

  347. 

  348. 

  349. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope8 --out=frgrot_zGRt1N --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    350. 

  350. 

  351. 

  352. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope9 --out=frgrot_q3M0d6 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    353. 

  353. 

  354. 

  355. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mask --out=frgrot_eoY7ct --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=nn
    356. 

  356. 

  357. 

  358. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat
    359. 

  359. 

  360. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=example_func --out=frgrot_LCrrjE --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline
    361. 

  361. 

  362. 

  363. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mean_func --out=frgrot_kuCrym --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline
    364. 

  364. 

  365. 

  366. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope1 --out=frgrot_lbV22V --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    367. 

  367. 

  368. 

  369. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope10 --out=frgrot_x8ljpf --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    370. 

  370. 

  371. 

  372. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope2 --out=frgrot_cwKTqx --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    373. 

  373. 

  374. 

  375. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope3 --out=frgrot_fvGVFJ --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    376. 

  376. 

  377. 

  378. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope4 --out=frgrot_Kvtqq5 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    379. 

  379. 

  380. 

  381. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope5 --out=frgrot_3T5ZKs --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    382. 

  382. 

  383. 

  384. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope6 --out=frgrot_JrhxfM --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    385. 

  385. 

  386. 

  387. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope7 --out=frgrot_1CaUZT --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    388. 

  388. 

  389. 

  390. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope8 --out=frgrot_42ukqi --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    391. 

  391. 

  392. 

  393. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope9 --out=frgrot_OEX17z --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    394. 

  394. 

  395. 

  396. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope1 --out=frgrot_HROzgN --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    397. 

  397. 

  398. 

  399. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope10 --out=frgrot_k4GWg5 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    400. 

  400. 

  401. 

  402. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope2 --out=frgrot_8y9Cgt --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    403. 

  403. 

  404. 

  405. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope3 --out=frgrot_rXmNcP --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    406. 

  406. 

  407. 

  408. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope4 --out=frgrot_p8Xy20 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    409. 

  409. 

  410. 

  411. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope5 --out=frgrot_pF7rSi --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    412. 

  412. 

  413. 

  414. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope6 --out=frgrot_MoV7VG --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    415. 

  415. 

  416. 

  417. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope7 --out=frgrot_Ma2Ht3 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    418. 

  418. 

  419. 

  420. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope8 --out=frgrot_hleTae --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    421. 

  421. 

  422. 

  423. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope9 --out=frgrot_fx1HDw --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    424. 

  424. 

  425. 

  426. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mask --out=frgrot_RhkfAU --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=nn
    427. 

  427. 

  428. 

  429. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat
    430. 

  430. 

  431. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=example_func --out=frgrot_eoWjV4 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline
    432. 

  432. 

  433. 

  434. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mean_func --out=frgrot_yAfInT --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline
    435. 

  435. 

  436. 

  437. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope1 --out=frgrot_tVtazp --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    438. 

  438. 

  439. 

  440. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope10 --out=frgrot_8AEpAJ --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    441. 

  441. 

  442. 

  443. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope2 --out=frgrot_0rmz56 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    444. 

  444. 

  445. 

  446. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope3 --out=frgrot_pXUmMg --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    447. 

  447. 

  448. 

  449. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope4 --out=frgrot_lFG29D --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    450. 

  450. 

  451. 

  452. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope5 --out=frgrot_KcODb1 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    453. 

  453. 

  454. 

  455. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope6 --out=frgrot_k0zpCe --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    456. 

  456. 

  457. 

  458. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope7 --out=frgrot_jpdMTw --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    459. 

  459. 

  460. 

  461. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope8 --out=frgrot_c70n6U --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    462. 

  462. 

  463. 

  464. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope9 --out=frgrot_c5dlLc --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    465. 

  465. 

  466. 

  467. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope1 --out=frgrot_UXumgs --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    468. 

  468. 

  469. 

  470. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope10 --out=frgrot_i0hPEK --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    471. 

  471. 

  472. 

  473. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope2 --out=frgrot_ci31T7 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    474. 

  474. 

  475. 

  476. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope3 --out=frgrot_KXy9jj --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    477. 

  477. 

  478. 

  479. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope4 --out=frgrot_jvPmBF --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    480. 

  480. 

  481. 

  482. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope5 --out=frgrot_CMIdNY --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    483. 

  483. 

  484. 

  485. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope6 --out=frgrot_37mFum --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    486. 

  486. 

  487. 

  488. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope7 --out=frgrot_tcks4x --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    489. 

  489. 

  490. 

  491. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope8 --out=frgrot_TBDJnQ --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    492. 

  492. 

  493. 

  494. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope9 --out=frgrot_PnZcyc --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    495. 

  495. 

  496. 

  497. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mask --out=frgrot_LBuBUp --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=nn
    498. 

  498. 

  499. 

  500. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat
    501. 

  501. 

  502. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=example_func --out=frgrot_QoAZAQ --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline
    503. 

  503. 

  504. 

  505. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mean_func --out=frgrot_LZ5Thy --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline
    506. 

  506. 

  507. 

  508. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope1 --out=frgrot_Bnlap5 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    509. 

  509. 

  510. 

  511. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope10 --out=frgrot_3Ll2br --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    512. 

  512. 

  513. 

  514. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope2 --out=frgrot_lGZ2fE --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    515. 

  515. 

  516. 

  517. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope3 --out=frgrot_M6M4sY --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    518. 

  518. 

  519. 

  520. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope4 --out=frgrot_CEVyGm --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    521. 

  521. 

  522. 

  523. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope5 --out=frgrot_R8RzrF --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    524. 

  524. 

  525. 

  526. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope6 --out=frgrot_I40iSQ --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    527. 

  527. 

  528. 

  529. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope7 --out=frgrot_4ekyje --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    530. 

  530. 

  531. 

  532. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope8 --out=frgrot_603kyw --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    533. 

  533. 

  534. 

  535. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope9 --out=frgrot_38OokL --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    536. 

  536. 

  537. 

  538. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope1 --out=frgrot_AKNpl5 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    539. 

  539. 

  540. 

  541. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope10 --out=frgrot_wf4w8n --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    542. 

  542. 

  543. 

  544. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope2 --out=frgrot_Kz8BSK --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    545. 

  545. 

  546. 

  547. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope3 --out=frgrot_RFuYkT --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    548. 

  548. 

  549. 

  550. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope4 --out=frgrot_PncSYf --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    551. 

  551. 

  552. 

  553. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope5 --out=frgrot_9dRNdA --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    554. 

  554. 

  555. 

  556. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope6 --out=frgrot_MIv2jK --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    557. 

  557. 

  558. 

  559. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope7 --out=frgrot_DB7SB7 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    560. 

  560. 

  561. 

  562. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope8 --out=frgrot_lSBFVq --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    563. 

  563. 

  564. 

  565. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope9 --out=frgrot_vTDLbO --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
    566. 

  566. 

  567. 

  568. /usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mask --out=frgrot_CMBvrY --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=nn
    569. 

  569. 

  570. 

  571. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg/standard bg_image
    572. 

  572. 

  573. /usr/share/fsl/5.0/bin/fslmerge -t mask  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/mask
    574. 

  574. 

  575. mkdir -p inputreg
    576. 

  576. 

  577. /usr/share/fsl/5.0/bin/fslmaths ../mask -mul 8 -Tmean masksum -odt short
    578. 

  578. 

  579. /usr/share/fsl/5.0/bin/fslmaths masksum -thr 8 -add masksum masksum
    580. 

  580. 

  581. /usr/share/fsl/5.0/bin/overlay 0 0 -c ../bg_image -a masksum 0.9 16 masksum_overlay
    582. 

  582. 

  583. /usr/share/fsl/5.0/bin/slicer masksum_overlay -S 2 750 masksum_overlay.png
    584. 

  584. 

  585. /usr/share/fsl/5.0/bin/fslmaths masksum -mul 0 maskunique
    586. 

  586. 

  587. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/mask -mul -1 -add 1 -mul 1 -add maskunique maskunique
    588. 

  588. 

  589. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/mask -mul -1 -add 1 -mul 2 -add maskunique maskunique
    590. 

  590. 

  591. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/mask -mul -1 -add 1 -mul 3 -add maskunique maskunique
    592. 

  592. 

  593. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/mask -mul -1 -add 1 -mul 4 -add maskunique maskunique
    594. 

  594. 

  595. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/mask -mul -1 -add 1 -mul 5 -add maskunique maskunique
    596. 

  596. 

  597. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/mask -mul -1 -add 1 -mul 6 -add maskunique maskunique
    598. 

  598. 

  599. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/mask -mul -1 -add 1 -mul 7 -add maskunique maskunique
    600. 

  600. 

  601. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/mask -mul -1 -add 1 -mul 8 -add maskunique maskunique
    602. 

  602. 

  603. /usr/share/fsl/5.0/bin/fslmaths masksum -thr 7 -uthr 7 -bin -mul maskunique maskunique
    604. 

  604. 

  605. /usr/share/fsl/5.0/bin/overlay 0 0 ../bg_image -a maskunique 0.9 8 maskunique_overlay
    606. 

  606. 

  607. /usr/share/fsl/5.0/bin/slicer maskunique_overlay -S 2 750 maskunique_overlay.png
    608. 

  608. 

  609. /bin/cp /usr/share/fsl/5.0/etc/luts/ramp.gif .ramp.gif
    610. 

  610. 

  611. /usr/share/fsl/5.0/bin/fslmaths mask -Tmin mask
    612. 

  612. 

  613. /usr/share/fsl/5.0/bin/fslmerge -t mean_func  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/mean_func
    614. 

  614. 

  615. /usr/share/fsl/5.0/bin/fslmaths mean_func -Tmean mean_func
    616. 

  616. 

  617. /usr/share/fsl/5.0/bin/fslmerge -t cope1  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/cope1
    618. 

  618. 

  619. /usr/share/fsl/5.0/bin/fslmaths cope1 -mas mask cope1
    620. 

  620. 

  621. printf '0.056266605 ' >> design.lcon
    622. 

  622. 

  623. /usr/share/fsl/5.0/bin/fslmerge -t varcope1  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/varcope1
    624. 

  624. 

  625. /usr/share/fsl/5.0/bin/fslmaths varcope1 -mas mask varcope1
    626. 

  626. 

  627. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/cope1 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1
    628. 

  628. 

  629. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/cope1 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1
    630. 

  630. 

  631. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/cope1 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1
    632. 

  632. 

  633. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/cope1 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1
    634. 

  634. 

  635. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/cope1 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1
    636. 

  636. 

  637. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/cope1 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1
    638. 

  638. 

  639. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/cope1 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1
    640. 

  640. 

  641. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/cope1 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1
    642. 

  642. 

  643. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t1  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1
    644. 

  644. 

  645. /usr/share/fsl/5.0/bin/fslmaths tdof_t1 -mas mask tdof_t1
    646. 

  646. 

  647. /usr/share/fsl/5.0/bin/fslmerge -t cope2  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/cope2
    648. 

  648. 

  649. /usr/share/fsl/5.0/bin/fslmaths cope2 -mas mask cope2
    650. 

  650. 

  651. printf '0.038924725 ' >> design.lcon
    652. 

  652. 

  653. /usr/share/fsl/5.0/bin/fslmerge -t varcope2  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/varcope2
    654. 

  654. 

  655. /usr/share/fsl/5.0/bin/fslmaths varcope2 -mas mask varcope2
    656. 

  656. 

  657. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/cope2 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2
    658. 

  658. 

  659. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/cope2 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2
    660. 

  660. 

  661. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/cope2 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2
    662. 

  662. 

  663. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/cope2 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2
    664. 

  664. 

  665. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/cope2 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2
    666. 

  666. 

  667. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/cope2 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2
    668. 

  668. 

  669. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/cope2 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2
    670. 

  670. 

  671. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/cope2 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2
    672. 

  672. 

  673. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t2  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2
    674. 

  674. 

  675. /usr/share/fsl/5.0/bin/fslmaths tdof_t2 -mas mask tdof_t2
    676. 

  676. 

  677. /usr/share/fsl/5.0/bin/fslmerge -t cope3  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/cope3
    678. 

  678. 

  679. /usr/share/fsl/5.0/bin/fslmaths cope3 -mas mask cope3
    680. 

  680. 

  681. printf '0.0465939125 ' >> design.lcon
    682. 

  682. 

  683. /usr/share/fsl/5.0/bin/fslmerge -t varcope3  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/varcope3
    684. 

  684. 

  685. /usr/share/fsl/5.0/bin/fslmaths varcope3 -mas mask varcope3
    686. 

  686. 

  687. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/cope3 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3
    688. 

  688. 

  689. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/cope3 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3
    690. 

  690. 

  691. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/cope3 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3
    692. 

  692. 

  693. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/cope3 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3
    694. 

  694. 

  695. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/cope3 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3
    696. 

  696. 

  697. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/cope3 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3
    698. 

  698. 

  699. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/cope3 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3
    700. 

  700. 

  701. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/cope3 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3
    702. 

  702. 

  703. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t3  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3
    704. 

  704. 

  705. /usr/share/fsl/5.0/bin/fslmaths tdof_t3 -mas mask tdof_t3
    706. 

  706. 

  707. /usr/share/fsl/5.0/bin/fslmerge -t cope4  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/cope4
    708. 

  708. 

  709. /usr/share/fsl/5.0/bin/fslmaths cope4 -mas mask cope4
    710. 

  710. 

  711. printf '0.029288559999999998 ' >> design.lcon
    712. 

  712. 

  713. /usr/share/fsl/5.0/bin/fslmerge -t varcope4  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/varcope4
    714. 

  714. 

  715. /usr/share/fsl/5.0/bin/fslmaths varcope4 -mas mask varcope4
    716. 

  716. 

  717. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/cope4 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4
    718. 

  718. 

  719. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/cope4 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4
    720. 

  720. 

  721. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/cope4 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4
    722. 

  722. 

  723. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/cope4 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4
    724. 

  724. 

  725. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/cope4 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4
    726. 

  726. 

  727. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/cope4 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4
    728. 

  728. 

  729. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/cope4 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4
    730. 

  730. 

  731. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/cope4 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4
    732. 

  732. 

  733. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t4  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4
    734. 

  734. 

  735. /usr/share/fsl/5.0/bin/fslmaths tdof_t4 -mas mask tdof_t4
    736. 

  736. 

  737. /usr/share/fsl/5.0/bin/fslmerge -t cope5  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/cope5
    738. 

  738. 

  739. /usr/share/fsl/5.0/bin/fslmaths cope5 -mas mask cope5
    740. 

  740. 

  741. printf '0.039061374999999995 ' >> design.lcon
    742. 

  742. 

  743. /usr/share/fsl/5.0/bin/fslmerge -t varcope5  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/varcope5
    744. 

  744. 

  745. /usr/share/fsl/5.0/bin/fslmaths varcope5 -mas mask varcope5
    746. 

  746. 

  747. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/cope5 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5
    748. 

  748. 

  749. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/cope5 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5
    750. 

  750. 

  751. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/cope5 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5
    752. 

  752. 

  753. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/cope5 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5
    754. 

  754. 

  755. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/cope5 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5
    756. 

  756. 

  757. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/cope5 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5
    758. 

  758. 

  759. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/cope5 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5
    760. 

  760. 

  761. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/cope5 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5
    762. 

  762. 

  763. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t5  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5
    764. 

  764. 

  765. /usr/share/fsl/5.0/bin/fslmaths tdof_t5 -mas mask tdof_t5
    766. 

  766. 

  767. /usr/share/fsl/5.0/bin/fslmerge -t cope6  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/cope6
    768. 

  768. 

  769. /usr/share/fsl/5.0/bin/fslmaths cope6 -mas mask cope6
    770. 

  770. 

  771. printf '0.04760520000000001 ' >> design.lcon
    772. 

  772. 

  773. /usr/share/fsl/5.0/bin/fslmerge -t varcope6  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/varcope6
    774. 

  774. 

  775. /usr/share/fsl/5.0/bin/fslmaths varcope6 -mas mask varcope6
    776. 

  776. 

  777. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/cope6 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6
    778. 

  778. 

  779. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/cope6 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6
    780. 

  780. 

  781. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/cope6 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6
    782. 

  782. 

  783. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/cope6 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6
    784. 

  784. 

  785. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/cope6 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6
    786. 

  786. 

  787. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/cope6 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6
    788. 

  788. 

  789. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/cope6 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6
    790. 

  790. 

  791. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/cope6 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6
    792. 

  792. 

  793. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t6  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6
    794. 

  794. 

  795. /usr/share/fsl/5.0/bin/fslmaths tdof_t6 -mas mask tdof_t6
    796. 

  796. 

  797. /usr/share/fsl/5.0/bin/fslmerge -t cope7  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/cope7
    798. 

  798. 

  799. /usr/share/fsl/5.0/bin/fslmaths cope7 -mas mask cope7
    800. 

  800. 

  801. printf '0.0456137425 ' >> design.lcon
    802. 

  802. 

  803. /usr/share/fsl/5.0/bin/fslmerge -t varcope7  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/varcope7
    804. 

  804. 

  805. /usr/share/fsl/5.0/bin/fslmaths varcope7 -mas mask varcope7
    806. 

  806. 

  807. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/cope7 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7
    808. 

  808. 

  809. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/cope7 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7
    810. 

  810. 

  811. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/cope7 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7
    812. 

  812. 

  813. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/cope7 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7
    814. 

  814. 

  815. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/cope7 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7
    816. 

  816. 

  817. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/cope7 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7
    818. 

  818. 

  819. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/cope7 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7
    820. 

  820. 

  821. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/cope7 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7
    822. 

  822. 

  823. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t7  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7
    824. 

  824. 

  825. /usr/share/fsl/5.0/bin/fslmaths tdof_t7 -mas mask tdof_t7
    826. 

  826. 

  827. /usr/share/fsl/5.0/bin/fslmerge -t cope8  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/cope8
    828. 

  828. 

  829. /usr/share/fsl/5.0/bin/fslmaths cope8 -mas mask cope8
    830. 

  830. 

  831. printf '0.026646942499999996 ' >> design.lcon
    832. 

  832. 

  833. /usr/share/fsl/5.0/bin/fslmerge -t varcope8  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/varcope8
    834. 

  834. 

  835. /usr/share/fsl/5.0/bin/fslmaths varcope8 -mas mask varcope8
    836. 

  836. 

  837. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/cope8 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8
    838. 

  838. 

  839. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/cope8 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8
    840. 

  840. 

  841. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/cope8 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8
    842. 

  842. 

  843. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/cope8 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8
    844. 

  844. 

  845. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/cope8 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8
    846. 

  846. 

  847. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/cope8 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8
    848. 

  848. 

  849. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/cope8 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8
    850. 

  850. 

  851. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/cope8 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8
    852. 

  852. 

  853. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t8  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8
    854. 

  854. 

  855. /usr/share/fsl/5.0/bin/fslmaths tdof_t8 -mas mask tdof_t8
    856. 

  856. 

  857. /usr/share/fsl/5.0/bin/fslmerge -t cope9  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/cope9
    858. 

  858. 

  859. /usr/share/fsl/5.0/bin/fslmaths cope9 -mas mask cope9
    860. 

  860. 

  861. printf '0.026204179999999997 ' >> design.lcon
    862. 

  862. 

  863. /usr/share/fsl/5.0/bin/fslmerge -t varcope9  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/varcope9
    864. 

  864. 

  865. /usr/share/fsl/5.0/bin/fslmaths varcope9 -mas mask varcope9
    866. 

  866. 

  867. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/cope9 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9
    868. 

  868. 

  869. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/cope9 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9
    870. 

  870. 

  871. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/cope9 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9
    872. 

  872. 

  873. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/cope9 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9
    874. 

  874. 

  875. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/cope9 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9
    876. 

  876. 

  877. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/cope9 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9
    878. 

  878. 

  879. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/cope9 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9
    880. 

  880. 

  881. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/cope9 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9
    882. 

  882. 

  883. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t9  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9
    884. 

  884. 

  885. /usr/share/fsl/5.0/bin/fslmaths tdof_t9 -mas mask tdof_t9
    886. 

  886. 

  887. /usr/share/fsl/5.0/bin/fslmerge -t cope10  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/cope10
    888. 

  888. 

  889. /usr/share/fsl/5.0/bin/fslmaths cope10 -mas mask cope10
    890. 

  890. 

  891. printf '0.09050136125000001 ' >> design.lcon
    892. 

  892. 

  893. /usr/share/fsl/5.0/bin/fslmerge -t varcope10  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/varcope10
    894. 

  894. 

  895. /usr/share/fsl/5.0/bin/fslmaths varcope10 -mas mask varcope10
    896. 

  896. 

  897. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/cope10 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10
    898. 

  898. 

  899. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/cope10 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10
    900. 

  900. 

  901. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/cope10 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10
    902. 

  902. 

  903. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/cope10 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10
    904. 

  904. 

  905. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/cope10 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10
    906. 

  906. 

  907. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/cope10 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10
    908. 

  908. 

  909. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/cope10 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10
    910. 

  910. 

  911. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/cope10 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10
    912. 

  912. 

  913. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t10  /data/project/studyforrest_ppa/sub-19/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-19/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-19/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-19/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-19/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-19/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-19/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-19/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10
    914. 

  914. 

  915. /usr/share/fsl/5.0/bin/fslmaths tdof_t10 -mas mask tdof_t10
    916.