We use cookies to ensure you get the best experience on our website
Home Explore Help News
Register Sign In
chaeusler
/
studyforrest-ppa-analysis
DOI
10.12751/g-node.7is9s6
1
1
Fork 1
Files Issues 0 Pull Requests 0
Tree: d12c48e5be
Branches Tags
studyforrest...
/
sub-19
/
2nd-lvl_movie-ppa-grp.gfeat
/
cope5.feat
/
report_log.html

report_log.html 2.3 KB
History Download

1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859 
  1. <HTML><HEAD>
    2. 

  2. <!--refreshstart-->
    3. 

  3. 

  4. <!--refreshstop-->
    5. 

  5. <link REL=stylesheet TYPE=text/css href=.files/fsl.css>
    6. 

  6. <TITLE>FSL</TITLE></HEAD><BODY><OBJECT data=report.html></OBJECT>
    7. 

  7. <h2>Progress Report / Log</h2>
    8. 

  8. Started at Sat 14 Mar 2020 01:01:36 AM CET<p>
    9. 

  9. <pre>
    10. 

  10. 

  11. cp -r ../.files .files
    12. 

  12. </pre><hr>Higher-level stats<br><pre>
    13. 

  13. 

  14. cat ../design.lcon | awk '{ print  }' > design.lcon
    15. 

  15. /usr/share/fsl/5.0/bin/flameo --cope=filtered_func_data --vc=var_filtered_func_data --dvc=tdof_filtered_func_data --mask=mask --ld=stats --dm=design.mat --cs=design.grp --tc=design.con  --runmode=fe
    16. 

  16. Log directory is: stats
    17. 

  17. Setting up:
    18. 

  18. ntptsing=8.000000 
    19. 

  19. 

  20. evs_group=1.000000 
    21. 

  21. 

  22. No f contrasts
    23. 

  23. 

  24. WARNING: The passed in varcope file, var_filtered_func_data, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
    25. 

  25. nevs=1
    26. 

  26. ntpts=8
    27. 

  27. ngs=1
    28. 

  28. nvoxels=135082
    29. 

  29. Running:
    30. 

  30. nmaskvoxels=135082
    31. 

  31.  1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
    32. 

  32. Saving results
    33. 

  33. 

  34. Log directory was: stats
    35. 

  35. 

  36. /bin/rm -f stats/zem* stats/zols* stats/mask* ; /bin/mv dof stats
    37. 

  37. 

  38. /usr/share/fsl/5.0/bin/smoothest -d 7 -m mask -r stats/res4d > stats/smoothness
    39. 

  39. </pre><hr>Post-stats<br><pre>
    40. 

  40. 

  41. /usr/share/fsl/5.0/bin/fslmaths stats/zstat1 -mas mask thresh_zstat1
    42. 

  42. 

  43. echo 135082 > thresh_zstat1.vol
    44. 

  44. zstat1: DLH=0.155281 VOLUME=135082 RESELS=32.4713
    45. 

  45. 

  46. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat1 -c stats/cope1 -t 3.4 -p 0.05 -d 0.155281 --volume=135082 --othresh=thresh_zstat1 -o cluster_mask_zstat1 --connectivity=26 --mm --olmax=lmax_zstat1_std.txt --scalarname=Z > cluster_zstat1_std.txt
    47. 

  47. 

  48. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat1 -std
    49. 

  49. 

  50. /usr/share/fsl/5.0/bin/fslstats thresh_zstat1 -l 0.0001 -R 2>/dev/null
    51. 

  51. 3.400269 7.261271 
    52. 

  52. Rendering using zmin=3.400269 zmax=7.261271
    53. 

  53. 

  54. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat1 3.400269 7.261271 rendered_thresh_zstat1
    55. 

  55. 

  56. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat1 -S 2 750 rendered_thresh_zstat1.png
    57. 

  57. 

  58. /bin/cp /usr/share/fsl/5.0/etc/luts/ramp.gif .ramp.gif
    59. 

  59. </pre><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br></BODY></HTML>
    60.