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chaeusler
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studyforrest-ppa-analysis
DOI
10.12751/g-node.7is9s6
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run-3_audio-ppa-grp.feat
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feat3_stats

feat3_stats 4.2 KB
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  1. </pre><hr>Stats<br><pre>
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  3. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-18/onsets/aomovie/run-3/body.txt custom_timing_files/ev1.txt
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  5. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-18/onsets/aomovie/run-3/bpart.txt custom_timing_files/ev2.txt
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  7. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-18/onsets/aomovie/run-3/fahead.txt custom_timing_files/ev3.txt
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  9. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-18/onsets/aomovie/run-3/furn.txt custom_timing_files/ev4.txt
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  11. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-18/onsets/aomovie/run-3/geo.txt custom_timing_files/ev5.txt
    12. 

  12. 

  13. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-18/onsets/aomovie/run-3/groom.txt custom_timing_files/ev6.txt
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  14. 

  15. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-18/onsets/aomovie/run-3/obj.txt custom_timing_files/ev7.txt
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  16. 

  17. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-18/onsets/aomovie/run-3/se_new.txt custom_timing_files/ev8.txt
    18. 

  18. 

  19. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-18/onsets/aomovie/run-3/se_old.txt custom_timing_files/ev9.txt
    20. 

  20. 

  21. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-18/onsets/aomovie/run-3/sex_f.txt custom_timing_files/ev10.txt
    22. 

  22. 

  23. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-18/onsets/aomovie/run-3/sex_m.txt custom_timing_files/ev11.txt
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  24. 

  25. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-18/onsets/aomovie/run-3/vse_new.txt custom_timing_files/ev12.txt
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  26. 

  27. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-18/onsets/aomovie/run-3/vse_old.txt custom_timing_files/ev13.txt
    28. 

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  29. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-18/onsets/aomovie/run-3/vlo_ch.txt custom_timing_files/ev14.txt
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  31. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-18/onsets/aomovie/run-3/vpe_new.txt custom_timing_files/ev15.txt
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  33. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-18/onsets/aomovie/run-3/fg_ad_lrdiff.txt custom_timing_files/ev17.txt
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  35. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-18/onsets/aomovie/run-3/fg_ad_rms.txt custom_timing_files/ev18.txt
    36. 

  36. 

  37. paste -d  ' '  /data/project/studyforrest_ppa/inputs/phase1/sub018/BOLD/task001_run003/bold_dico_moco.txt > confoundevs.txt
    38. 

  38. 

  39. /usr/share/fsl/5.0/bin/feat_model design confoundevs.txt
    40. 

  40. Warning: at least one EV is (close to) a linear combination of the others. You probably need to alter your design.
    41. 

  41. (Design matrix is rank deficient - ratio of min:max eigenvalues in SVD of matrix is 9.53336e-18)
    42. 

  42.  Contrasts involving these combinations will be set to zero.
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  43. 

  44. 

  45. /usr/share/fsl/5.0/bin/film_gls --in=filtered_func_data --rn=stats --pd=design.mat --thr=1000.0 --sa --ms=5 --con=design.con  
    46. 

  46. Log directory is: stats
    47. 

  47. paradigm.getDesignMatrix().Nrows()=438
    48. 

  48. paradigm.getDesignMatrix().Ncols()=42
    49. 

  49. sizeTS=438
    50. 

  50. numTS=62253
    51. 

  51. Calculating residuals...
    52. 

  52. Completed
    53. 

  53. Estimating residual autocorrelation...
    54. 

  54. Calculating raw AutoCorrs... Completed
    55. 

  55. mode = 9757.81
    56. 

  56. sig = 2622
    57. 

  57. Spatially smoothing auto corr estimates
    58. 

  58. ...................
    59. 

  59. Completed
    60. 

  60. Tukey M = 20
    61. 

  61. Tukey estimates... Completed
    62. 

  62. Completed
    63. 

  63. Prewhitening and Computing PEs...
    64. 

  64. Percentage done:
    65. 

  65. 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,Completed
    66. 

  66. Saving results... 
    67. 

  67. Completed
    68. 

  68. 

  69. /usr/share/fsl/5.0/bin/smoothest -d 396   -m mask -r stats/res4d > stats/smoothness
    70.