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- </pre><hr>Preprocessing:Stage 1<br><pre>
- </pre><hr>Preprocessing:Stage 2<br><pre>
- /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data -Tmean mean_func
- /usr/share/fsl/5.0/bin/bet2 mean_func mask -f 0.3 -n -m; /usr/share/fsl/5.0/bin/immv mask_mask mask
- /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data -mas mask prefiltered_func_data_bet
- /usr/share/fsl/5.0/bin/fslstats prefiltered_func_data_bet -p 2 -p 98
- 0.000000 417.000000
- /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_bet -thr 41.7 -Tmin -bin mask -odt char
- /usr/share/fsl/5.0/bin/fslstats prefiltered_func_data -k mask -p 50
- 322.000000
- /usr/share/fsl/5.0/bin/fslmaths mask -dilF mask
- /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data -mas mask prefiltered_func_data_thresh
- /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_thresh -Tmean mean_func
- /usr/share/fsl/5.0/bin/susan prefiltered_func_data_thresh 241.5 1.6985138004246285 3 1 1 mean_func 241.5 prefiltered_func_data_smooth
- /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_smooth -mas mask prefiltered_func_data_smooth
- /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_smooth -mul 31.055900621118013 prefiltered_func_data_intnorm
- /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_intnorm -Tmean tempMean
- /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_intnorm -bptf 37.49998125000937 -1 -add tempMean prefiltered_func_data_tempfilt
- /usr/share/fsl/5.0/bin/imrm tempMean
- /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_tempfilt filtered_func_data
- /usr/share/fsl/5.0/bin/fslmaths filtered_func_data -Tmean mean_func
- /bin/rm -rf prefiltered_func_data*
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