report_log.html 17 KB

123456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778798081828384858687888990919293949596979899100101102103104105106107108109110111112113114115116117118119120121122123124125126127128129130131132133134135136137138139140141142143144145146147148149150151152153154155156157158159160161162163164165166167168169170171172173174175176177178179180181182183184185186187188189190191192193194195196197198199200201202203204205206207208209210211212213214215216217218219220221222223224225226227228229230231232233234235236237238239240241242243244245246247248249250251252253254255256257258259260261262263264265266267268269270271272273274275276277278279280281282283284285286287288289290291292293294295296297298299300301302303304305306307308309310311312313314315316317318319320321322323324325326327328329330331332333334335336337338339340341342343344345346347348349350351352353354355356357358
  1. <HTML><HEAD>
  2. <!--refreshstart-->
  3. <!--refreshstop-->
  4. <link REL=stylesheet TYPE=text/css href=.files/fsl.css>
  5. <TITLE>FSL</TITLE></HEAD><BODY><OBJECT data=report.html></OBJECT>
  6. <h2>Progress Report / Log</h2>
  7. Started at Sat 14 Mar 2020 02:41:39 AM CET<p>
  8. Feat main script<br><pre>
  9. /bin/cp /data/project/studyforrest_ppa/sub-15/run-4_1st_audio-ppa-grp.fsf design.fsf
  10. /usr/share/fsl/5.0/bin/feat_model design
  11. mkdir .files;cp /usr/share/fsl/5.0/doc/fsl.css .files;cp -r /usr/share/fsl/5.0/doc/images .files/images
  12. /usr/share/fsl/5.0/bin/fsl_sub -T 10 -l logs -N feat0_init /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/run-4_audio-ppa-grp.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/run-4_audio-ppa-grp.feat -I 1 -init
  13. 36036
  14. /usr/share/fsl/5.0/bin/fsl_sub -T 111 -l logs -N feat2_pre -j 36036 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/run-4_audio-ppa-grp.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/run-4_audio-ppa-grp.feat -I 1 -prestats
  15. 36718
  16. /usr/share/fsl/5.0/bin/fsl_sub -T 275 -l logs -N feat3_film -j 36718 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/run-4_audio-ppa-grp.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/run-4_audio-ppa-grp.feat -I 1 -stats
  17. 7211
  18. /usr/share/fsl/5.0/bin/fsl_sub -T 119 -l logs -N feat4_post -j 7211 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/run-4_audio-ppa-grp.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/run-4_audio-ppa-grp.feat -poststats 0
  19. 2424
  20. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 36718,7211,2424 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-15/run-4_audio-ppa-grp.feat/design.fsf -D /data/project/studyforrest_ppa/sub-15/run-4_audio-ppa-grp.feat -stop
  21. 6392
  22. </pre><hr>Initialisation<br><pre>
  23. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/inputs/studyforrest-data-aligned/sub-15/in_bold3Tp2/sub-15_task-aomovie_run-4_bold prefiltered_func_data -odt float
  24. Total original volumes = 488
  25. /usr/share/fsl/5.0/bin/fslroi prefiltered_func_data example_func 244 1
  26. </pre><hr>Preprocessing:Stage 1<br><pre>
  27. </pre><hr>Preprocessing:Stage 2<br><pre>
  28. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data -Tmean mean_func
  29. /usr/share/fsl/5.0/bin/bet2 mean_func mask -f 0.3 -n -m; /usr/share/fsl/5.0/bin/immv mask_mask mask
  30. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data -mas mask prefiltered_func_data_bet
  31. /usr/share/fsl/5.0/bin/fslstats prefiltered_func_data_bet -p 2 -p 98
  32. 0.000000 810.000000
  33. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_bet -thr 81.0 -Tmin -bin mask -odt char
  34. /usr/share/fsl/5.0/bin/fslstats prefiltered_func_data -k mask -p 50
  35. 518.000000
  36. /usr/share/fsl/5.0/bin/fslmaths mask -dilF mask
  37. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data -mas mask prefiltered_func_data_thresh
  38. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_thresh -Tmean mean_func
  39. /usr/share/fsl/5.0/bin/susan prefiltered_func_data_thresh 388.5 1.6985138004246285 3 1 1 mean_func 388.5 prefiltered_func_data_smooth
  40. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_smooth -mas mask prefiltered_func_data_smooth
  41. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_smooth -mul 19.305019305019304 prefiltered_func_data_intnorm
  42. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_intnorm -Tmean tempMean
  43. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_intnorm -bptf 37.5 -1 -add tempMean prefiltered_func_data_tempfilt
  44. /usr/share/fsl/5.0/bin/imrm tempMean
  45. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_tempfilt filtered_func_data
  46. /usr/share/fsl/5.0/bin/fslmaths filtered_func_data -Tmean mean_func
  47. /bin/rm -rf prefiltered_func_data*
  48. </pre><hr>Stats<br><pre>
  49. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-15/onsets/aomovie/run-4/body.txt custom_timing_files/ev1.txt
  50. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-15/onsets/aomovie/run-4/bpart.txt custom_timing_files/ev2.txt
  51. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-15/onsets/aomovie/run-4/fahead.txt custom_timing_files/ev3.txt
  52. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-15/onsets/aomovie/run-4/furn.txt custom_timing_files/ev4.txt
  53. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-15/onsets/aomovie/run-4/geo.txt custom_timing_files/ev5.txt
  54. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-15/onsets/aomovie/run-4/groom.txt custom_timing_files/ev6.txt
  55. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-15/onsets/aomovie/run-4/obj.txt custom_timing_files/ev7.txt
  56. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-15/onsets/aomovie/run-4/se_new.txt custom_timing_files/ev8.txt
  57. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-15/onsets/aomovie/run-4/se_old.txt custom_timing_files/ev9.txt
  58. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-15/onsets/aomovie/run-4/sex_f.txt custom_timing_files/ev10.txt
  59. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-15/onsets/aomovie/run-4/sex_m.txt custom_timing_files/ev11.txt
  60. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-15/onsets/aomovie/run-4/vse_new.txt custom_timing_files/ev12.txt
  61. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-15/onsets/aomovie/run-4/vse_old.txt custom_timing_files/ev13.txt
  62. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-15/onsets/aomovie/run-4/vlo_ch.txt custom_timing_files/ev14.txt
  63. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-15/onsets/aomovie/run-4/vpe_new.txt custom_timing_files/ev15.txt
  64. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-15/onsets/aomovie/run-4/vpe_old.txt custom_timing_files/ev16.txt
  65. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-15/onsets/aomovie/run-4/fg_ad_lrdiff.txt custom_timing_files/ev17.txt
  66. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-15/onsets/aomovie/run-4/fg_ad_rms.txt custom_timing_files/ev18.txt
  67. paste -d ' ' /data/project/studyforrest_ppa/inputs/phase1/sub015/BOLD/task001_run004/bold_dico_moco.txt > confoundevs.txt
  68. /usr/share/fsl/5.0/bin/feat_model design confoundevs.txt
  69. /usr/share/fsl/5.0/bin/film_gls --in=filtered_func_data --rn=stats --pd=design.mat --thr=1000.0 --sa --ms=5 --con=design.con
  70. Log directory is: stats
  71. paradigm.getDesignMatrix().Nrows()=488
  72. paradigm.getDesignMatrix().Ncols()=42
  73. sizeTS=488
  74. numTS=66762
  75. Calculating residuals...
  76. Completed
  77. Estimating residual autocorrelation...
  78. Calculating raw AutoCorrs... Completed
  79. mode = 10206.3
  80. sig = 2557
  81. Spatially smoothing auto corr estimates
  82. .....................
  83. Completed
  84. Tukey M = 22
  85. Tukey estimates... Completed
  86. Completed
  87. Prewhitening and Computing PEs...
  88. Percentage done:
  89. 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,Completed
  90. Saving results...
  91. Completed
  92. /usr/share/fsl/5.0/bin/smoothest -d 446 -m mask -r stats/res4d > stats/smoothness
  93. </pre><hr>Post-stats<br><pre>
  94. /usr/share/fsl/5.0/bin/fslmaths stats/zstat1 -mas mask thresh_zstat1
  95. echo 66762 > thresh_zstat1.vol
  96. zstat1: DLH=0.265756 VOLUME=66762 RESELS=17.3807
  97. /usr/share/fsl/5.0/bin/fslmaths stats/zstat2 -mas mask thresh_zstat2
  98. echo 66762 > thresh_zstat2.vol
  99. zstat2: DLH=0.265756 VOLUME=66762 RESELS=17.3807
  100. /usr/share/fsl/5.0/bin/fslmaths stats/zstat3 -mas mask thresh_zstat3
  101. echo 66762 > thresh_zstat3.vol
  102. zstat3: DLH=0.265756 VOLUME=66762 RESELS=17.3807
  103. /usr/share/fsl/5.0/bin/fslmaths stats/zstat4 -mas mask thresh_zstat4
  104. echo 66762 > thresh_zstat4.vol
  105. zstat4: DLH=0.265756 VOLUME=66762 RESELS=17.3807
  106. /usr/share/fsl/5.0/bin/fslmaths stats/zstat5 -mas mask thresh_zstat5
  107. echo 66762 > thresh_zstat5.vol
  108. zstat5: DLH=0.265756 VOLUME=66762 RESELS=17.3807
  109. /usr/share/fsl/5.0/bin/fslmaths stats/zstat6 -mas mask thresh_zstat6
  110. echo 66762 > thresh_zstat6.vol
  111. zstat6: DLH=0.265756 VOLUME=66762 RESELS=17.3807
  112. /usr/share/fsl/5.0/bin/fslmaths stats/zstat7 -mas mask thresh_zstat7
  113. echo 66762 > thresh_zstat7.vol
  114. zstat7: DLH=0.265756 VOLUME=66762 RESELS=17.3807
  115. /usr/share/fsl/5.0/bin/fslmaths stats/zstat8 -mas mask thresh_zstat8
  116. echo 66762 > thresh_zstat8.vol
  117. zstat8: DLH=0.265756 VOLUME=66762 RESELS=17.3807
  118. /usr/share/fsl/5.0/bin/fslmaths stats/zstat9 -mas mask thresh_zstat9
  119. echo 66762 > thresh_zstat9.vol
  120. zstat9: DLH=0.265756 VOLUME=66762 RESELS=17.3807
  121. /usr/share/fsl/5.0/bin/fslmaths stats/zstat10 -mas mask thresh_zstat10
  122. echo 66762 > thresh_zstat10.vol
  123. zstat10: DLH=0.265756 VOLUME=66762 RESELS=17.3807
  124. /usr/share/fsl/5.0/bin/fslmaths stats/zstat11 -mas mask thresh_zstat11
  125. echo 66762 > thresh_zstat11.vol
  126. zstat11: DLH=0.265756 VOLUME=66762 RESELS=17.3807
  127. /usr/share/fsl/5.0/bin/fslmaths stats/zstat12 -mas mask thresh_zstat12
  128. echo 66762 > thresh_zstat12.vol
  129. zstat12: DLH=0.265756 VOLUME=66762 RESELS=17.3807
  130. /usr/share/fsl/5.0/bin/fslmaths stats/zstat13 -mas mask thresh_zstat13
  131. echo 66762 > thresh_zstat13.vol
  132. zstat13: DLH=0.265756 VOLUME=66762 RESELS=17.3807
  133. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat1 -c stats/cope1 -t 3.4 -p 0.05 -d 0.265756 --volume=66762 --othresh=thresh_zstat1 -o cluster_mask_zstat1 --connectivity=26 --olmax=lmax_zstat1.txt --scalarname=Z > cluster_zstat1.txt
  134. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat1
  135. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat2 -c stats/cope2 -t 3.4 -p 0.05 -d 0.265756 --volume=66762 --othresh=thresh_zstat2 -o cluster_mask_zstat2 --connectivity=26 --olmax=lmax_zstat2.txt --scalarname=Z > cluster_zstat2.txt
  136. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat2
  137. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat3 -c stats/cope3 -t 3.4 -p 0.05 -d 0.265756 --volume=66762 --othresh=thresh_zstat3 -o cluster_mask_zstat3 --connectivity=26 --olmax=lmax_zstat3.txt --scalarname=Z > cluster_zstat3.txt
  138. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat3
  139. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat4 -c stats/cope4 -t 3.4 -p 0.05 -d 0.265756 --volume=66762 --othresh=thresh_zstat4 -o cluster_mask_zstat4 --connectivity=26 --olmax=lmax_zstat4.txt --scalarname=Z > cluster_zstat4.txt
  140. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat4
  141. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat5 -c stats/cope5 -t 3.4 -p 0.05 -d 0.265756 --volume=66762 --othresh=thresh_zstat5 -o cluster_mask_zstat5 --connectivity=26 --olmax=lmax_zstat5.txt --scalarname=Z > cluster_zstat5.txt
  142. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat5
  143. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat6 -c stats/cope6 -t 3.4 -p 0.05 -d 0.265756 --volume=66762 --othresh=thresh_zstat6 -o cluster_mask_zstat6 --connectivity=26 --olmax=lmax_zstat6.txt --scalarname=Z > cluster_zstat6.txt
  144. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat6
  145. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat7 -c stats/cope7 -t 3.4 -p 0.05 -d 0.265756 --volume=66762 --othresh=thresh_zstat7 -o cluster_mask_zstat7 --connectivity=26 --olmax=lmax_zstat7.txt --scalarname=Z > cluster_zstat7.txt
  146. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat7
  147. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat8 -c stats/cope8 -t 3.4 -p 0.05 -d 0.265756 --volume=66762 --othresh=thresh_zstat8 -o cluster_mask_zstat8 --connectivity=26 --olmax=lmax_zstat8.txt --scalarname=Z > cluster_zstat8.txt
  148. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat8
  149. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat9 -c stats/cope9 -t 3.4 -p 0.05 -d 0.265756 --volume=66762 --othresh=thresh_zstat9 -o cluster_mask_zstat9 --connectivity=26 --olmax=lmax_zstat9.txt --scalarname=Z > cluster_zstat9.txt
  150. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat9
  151. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat10 -c stats/cope10 -t 3.4 -p 0.05 -d 0.265756 --volume=66762 --othresh=thresh_zstat10 -o cluster_mask_zstat10 --connectivity=26 --olmax=lmax_zstat10.txt --scalarname=Z > cluster_zstat10.txt
  152. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat10
  153. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat11 -c stats/cope11 -t 3.4 -p 0.05 -d 0.265756 --volume=66762 --othresh=thresh_zstat11 -o cluster_mask_zstat11 --connectivity=26 --olmax=lmax_zstat11.txt --scalarname=Z > cluster_zstat11.txt
  154. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat11
  155. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat12 -c stats/cope12 -t 3.4 -p 0.05 -d 0.265756 --volume=66762 --othresh=thresh_zstat12 -o cluster_mask_zstat12 --connectivity=26 --olmax=lmax_zstat12.txt --scalarname=Z > cluster_zstat12.txt
  156. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat12
  157. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat13 -c stats/cope13 -t 3.4 -p 0.05 -d 0.265756 --volume=66762 --othresh=thresh_zstat13 -o cluster_mask_zstat13 --connectivity=26 --olmax=lmax_zstat13.txt --scalarname=Z > cluster_zstat13.txt
  158. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat13
  159. /usr/share/fsl/5.0/bin/fslstats thresh_zstat1 -l 0.0001 -R 2>/dev/null
  160. 0.000000 0.000000
  161. /usr/share/fsl/5.0/bin/fslstats thresh_zstat2 -l 0.0001 -R 2>/dev/null
  162. 0.000000 0.000000
  163. /usr/share/fsl/5.0/bin/fslstats thresh_zstat3 -l 0.0001 -R 2>/dev/null
  164. 0.000000 0.000000
  165. /usr/share/fsl/5.0/bin/fslstats thresh_zstat4 -l 0.0001 -R 2>/dev/null
  166. 3.418630 4.994502
  167. /usr/share/fsl/5.0/bin/fslstats thresh_zstat5 -l 0.0001 -R 2>/dev/null
  168. 0.000000 0.000000
  169. /usr/share/fsl/5.0/bin/fslstats thresh_zstat6 -l 0.0001 -R 2>/dev/null
  170. 0.000000 0.000000
  171. /usr/share/fsl/5.0/bin/fslstats thresh_zstat7 -l 0.0001 -R 2>/dev/null
  172. 0.000000 0.000000
  173. /usr/share/fsl/5.0/bin/fslstats thresh_zstat8 -l 0.0001 -R 2>/dev/null
  174. 0.000000 0.000000
  175. /usr/share/fsl/5.0/bin/fslstats thresh_zstat9 -l 0.0001 -R 2>/dev/null
  176. 0.000000 0.000000
  177. /usr/share/fsl/5.0/bin/fslstats thresh_zstat10 -l 0.0001 -R 2>/dev/null
  178. 0.000000 0.000000
  179. /usr/share/fsl/5.0/bin/fslstats thresh_zstat11 -l 0.0001 -R 2>/dev/null
  180. 0.000000 0.000000
  181. /usr/share/fsl/5.0/bin/fslstats thresh_zstat12 -l 0.0001 -R 2>/dev/null
  182. 0.000000 0.000000
  183. /usr/share/fsl/5.0/bin/fslstats thresh_zstat13 -l 0.0001 -R 2>/dev/null
  184. 0.000000 0.000000
  185. Rendering using zmin=3.418630 zmax=4.994502
  186. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat1 3.418630 4.994502 rendered_thresh_zstat1
  187. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat1 -A 750 rendered_thresh_zstat1.png
  188. /bin/cp /usr/share/fsl/5.0/etc/luts/ramp.gif .ramp.gif
  189. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat2 3.418630 4.994502 rendered_thresh_zstat2
  190. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat2 -A 750 rendered_thresh_zstat2.png
  191. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat3 3.418630 4.994502 rendered_thresh_zstat3
  192. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat3 -A 750 rendered_thresh_zstat3.png
  193. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat4 3.418630 4.994502 rendered_thresh_zstat4
  194. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat4 -A 750 rendered_thresh_zstat4.png
  195. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat5 3.418630 4.994502 rendered_thresh_zstat5
  196. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat5 -A 750 rendered_thresh_zstat5.png
  197. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat6 3.418630 4.994502 rendered_thresh_zstat6
  198. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat6 -A 750 rendered_thresh_zstat6.png
  199. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat7 3.418630 4.994502 rendered_thresh_zstat7
  200. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat7 -A 750 rendered_thresh_zstat7.png
  201. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat8 3.418630 4.994502 rendered_thresh_zstat8
  202. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat8 -A 750 rendered_thresh_zstat8.png
  203. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat9 3.418630 4.994502 rendered_thresh_zstat9
  204. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat9 -A 750 rendered_thresh_zstat9.png
  205. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat10 3.418630 4.994502 rendered_thresh_zstat10
  206. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat10 -A 750 rendered_thresh_zstat10.png
  207. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat11 3.418630 4.994502 rendered_thresh_zstat11
  208. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat11 -A 750 rendered_thresh_zstat11.png
  209. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat12 3.418630 4.994502 rendered_thresh_zstat12
  210. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat12 -A 750 rendered_thresh_zstat12.png
  211. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat13 3.418630 4.994502 rendered_thresh_zstat13
  212. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat13 -A 750 rendered_thresh_zstat13.png
  213. mkdir -p tsplot ; /usr/share/fsl/5.0/bin/tsplot . -f filtered_func_data -o tsplot
  214. </pre><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br></BODY></HTML>