feat2_pre 1.6 KB

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  1. </pre><hr>Preprocessing:Stage 1<br><pre>
  2. </pre><hr>Preprocessing:Stage 2<br><pre>
  3. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data -Tmean mean_func
  4. /usr/share/fsl/5.0/bin/bet2 mean_func mask -f 0.3 -n -m; /usr/share/fsl/5.0/bin/immv mask_mask mask
  5. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data -mas mask prefiltered_func_data_bet
  6. /usr/share/fsl/5.0/bin/fslstats prefiltered_func_data_bet -p 2 -p 98
  7. 0.000000 902.000000
  8. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_bet -thr 90.2 -Tmin -bin mask -odt char
  9. /usr/share/fsl/5.0/bin/fslstats prefiltered_func_data -k mask -p 50
  10. 531.000000
  11. /usr/share/fsl/5.0/bin/fslmaths mask -dilF mask
  12. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data -mas mask prefiltered_func_data_thresh
  13. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_thresh -Tmean mean_func
  14. /usr/share/fsl/5.0/bin/susan prefiltered_func_data_thresh 398.25 1.6985138004246285 3 1 1 mean_func 398.25 prefiltered_func_data_smooth
  15. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_smooth -mas mask prefiltered_func_data_smooth
  16. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_smooth -mul 18.832391713747647 prefiltered_func_data_intnorm
  17. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_intnorm -Tmean tempMean
  18. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_intnorm -bptf 37.5 -1 -add tempMean prefiltered_func_data_tempfilt
  19. /usr/share/fsl/5.0/bin/imrm tempMean
  20. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_tempfilt filtered_func_data
  21. /usr/share/fsl/5.0/bin/fslmaths filtered_func_data -Tmean mean_func
  22. /bin/rm -rf prefiltered_func_data*