feat3_stats 4.0 KB

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  1. </pre><hr>Stats<br><pre>
  2. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-09/onsets/aomovie/run-5/body.txt custom_timing_files/ev1.txt
  3. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-09/onsets/aomovie/run-5/bpart.txt custom_timing_files/ev2.txt
  4. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-09/onsets/aomovie/run-5/fahead.txt custom_timing_files/ev3.txt
  5. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-09/onsets/aomovie/run-5/furn.txt custom_timing_files/ev4.txt
  6. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-09/onsets/aomovie/run-5/groom.txt custom_timing_files/ev6.txt
  7. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-09/onsets/aomovie/run-5/obj.txt custom_timing_files/ev7.txt
  8. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-09/onsets/aomovie/run-5/se_new.txt custom_timing_files/ev8.txt
  9. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-09/onsets/aomovie/run-5/se_old.txt custom_timing_files/ev9.txt
  10. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-09/onsets/aomovie/run-5/sex_f.txt custom_timing_files/ev10.txt
  11. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-09/onsets/aomovie/run-5/sex_m.txt custom_timing_files/ev11.txt
  12. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-09/onsets/aomovie/run-5/vse_new.txt custom_timing_files/ev12.txt
  13. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-09/onsets/aomovie/run-5/vse_old.txt custom_timing_files/ev13.txt
  14. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-09/onsets/aomovie/run-5/vpe_new.txt custom_timing_files/ev15.txt
  15. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-09/onsets/aomovie/run-5/vpe_old.txt custom_timing_files/ev16.txt
  16. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-09/onsets/aomovie/run-5/fg_ad_lrdiff.txt custom_timing_files/ev17.txt
  17. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-09/onsets/aomovie/run-5/fg_ad_rms.txt custom_timing_files/ev18.txt
  18. paste -d ' ' /data/project/studyforrest_ppa/inputs/phase1/sub009/BOLD/task001_run005/bold_dico_moco.txt > confoundevs.txt
  19. /usr/share/fsl/5.0/bin/feat_model design confoundevs.txt
  20. Warning: at least one EV is (close to) a linear combination of the others. You probably need to alter your design.
  21. (Design matrix is rank deficient - ratio of min:max eigenvalues in SVD of matrix is 1.09514e-17)
  22. Contrasts involving these combinations will be set to zero.
  23. /usr/share/fsl/5.0/bin/film_gls --in=filtered_func_data --rn=stats --pd=design.mat --thr=1000.0 --sa --ms=5 --con=design.con
  24. Log directory is: stats
  25. paradigm.getDesignMatrix().Nrows()=462
  26. paradigm.getDesignMatrix().Ncols()=42
  27. sizeTS=462
  28. numTS=64300
  29. Calculating residuals...
  30. Completed
  31. Estimating residual autocorrelation...
  32. Calculating raw AutoCorrs... Completed
  33. mode = 9920.91
  34. sig = 2483
  35. Spatially smoothing auto corr estimates
  36. ....................
  37. Completed
  38. Tukey M = 21
  39. Tukey estimates... Completed
  40. Completed
  41. Prewhitening and Computing PEs...
  42. Percentage done:
  43. 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,Completed
  44. Saving results...
  45. Completed
  46. /usr/share/fsl/5.0/bin/smoothest -d 420 -m mask -r stats/res4d > stats/smoothness