report_log.html 18 KB

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  1. <HTML><HEAD>
  2. <!--refreshstart-->
  3. <!--refreshstop-->
  4. <link REL=stylesheet TYPE=text/css href=.files/fsl.css>
  5. <TITLE>FSL</TITLE></HEAD><BODY><OBJECT data=report.html></OBJECT>
  6. <h2>Progress Report / Log</h2>
  7. Started at Sat 14 Mar 2020 02:13:38 AM CET<p>
  8. Feat main script<br><pre>
  9. /bin/cp /data/project/studyforrest_ppa/sub-02/run-3_1st_audio-ppa-grp.fsf design.fsf
  10. /usr/share/fsl/5.0/bin/feat_model design
  11. Warning: at least one EV is (close to) a linear combination of the others. You probably need to alter your design.
  12. (Design matrix is rank deficient - ratio of min:max eigenvalues in SVD of matrix is 5.73733e-18)
  13. Contrasts involving these combinations will be set to zero.
  14. mkdir .files;cp /usr/share/fsl/5.0/doc/fsl.css .files;cp -r /usr/share/fsl/5.0/doc/images .files/images
  15. /usr/share/fsl/5.0/bin/fsl_sub -T 10 -l logs -N feat0_init /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/run-3_audio-ppa-grp.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/run-3_audio-ppa-grp.feat -I 1 -init
  16. 29044
  17. /usr/share/fsl/5.0/bin/fsl_sub -T 111 -l logs -N feat2_pre -j 29044 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/run-3_audio-ppa-grp.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/run-3_audio-ppa-grp.feat -I 1 -prestats
  18. 30397
  19. /usr/share/fsl/5.0/bin/fsl_sub -T 247 -l logs -N feat3_film -j 30397 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/run-3_audio-ppa-grp.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/run-3_audio-ppa-grp.feat -I 1 -stats
  20. 5263
  21. /usr/share/fsl/5.0/bin/fsl_sub -T 119 -l logs -N feat4_post -j 5263 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/run-3_audio-ppa-grp.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/run-3_audio-ppa-grp.feat -poststats 0
  22. 5858
  23. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 30397,5263,5858 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/run-3_audio-ppa-grp.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/run-3_audio-ppa-grp.feat -stop
  24. 11210
  25. </pre><hr>Initialisation<br><pre>
  26. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/inputs/studyforrest-data-aligned/sub-02/in_bold3Tp2/sub-02_task-aomovie_run-3_bold prefiltered_func_data -odt float
  27. Total original volumes = 438
  28. /usr/share/fsl/5.0/bin/fslroi prefiltered_func_data example_func 219 1
  29. </pre><hr>Preprocessing:Stage 1<br><pre>
  30. </pre><hr>Preprocessing:Stage 2<br><pre>
  31. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data -Tmean mean_func
  32. /usr/share/fsl/5.0/bin/bet2 mean_func mask -f 0.3 -n -m; /usr/share/fsl/5.0/bin/immv mask_mask mask
  33. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data -mas mask prefiltered_func_data_bet
  34. /usr/share/fsl/5.0/bin/fslstats prefiltered_func_data_bet -p 2 -p 98
  35. 0.000000 506.000000
  36. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_bet -thr 50.6 -Tmin -bin mask -odt char
  37. /usr/share/fsl/5.0/bin/fslstats prefiltered_func_data -k mask -p 50
  38. 298.000000
  39. /usr/share/fsl/5.0/bin/fslmaths mask -dilF mask
  40. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data -mas mask prefiltered_func_data_thresh
  41. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_thresh -Tmean mean_func
  42. /usr/share/fsl/5.0/bin/susan prefiltered_func_data_thresh 223.5 1.6985138004246285 3 1 1 mean_func 223.5 prefiltered_func_data_smooth
  43. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_smooth -mas mask prefiltered_func_data_smooth
  44. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_smooth -mul 33.557046979865774 prefiltered_func_data_intnorm
  45. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_intnorm -Tmean tempMean
  46. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_intnorm -bptf 37.5 -1 -add tempMean prefiltered_func_data_tempfilt
  47. /usr/share/fsl/5.0/bin/imrm tempMean
  48. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_tempfilt filtered_func_data
  49. /usr/share/fsl/5.0/bin/fslmaths filtered_func_data -Tmean mean_func
  50. /bin/rm -rf prefiltered_func_data*
  51. </pre><hr>Stats<br><pre>
  52. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-02/onsets/aomovie/run-3/body.txt custom_timing_files/ev1.txt
  53. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-02/onsets/aomovie/run-3/bpart.txt custom_timing_files/ev2.txt
  54. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-02/onsets/aomovie/run-3/fahead.txt custom_timing_files/ev3.txt
  55. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-02/onsets/aomovie/run-3/furn.txt custom_timing_files/ev4.txt
  56. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-02/onsets/aomovie/run-3/geo.txt custom_timing_files/ev5.txt
  57. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-02/onsets/aomovie/run-3/groom.txt custom_timing_files/ev6.txt
  58. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-02/onsets/aomovie/run-3/obj.txt custom_timing_files/ev7.txt
  59. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-02/onsets/aomovie/run-3/se_new.txt custom_timing_files/ev8.txt
  60. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-02/onsets/aomovie/run-3/se_old.txt custom_timing_files/ev9.txt
  61. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-02/onsets/aomovie/run-3/sex_f.txt custom_timing_files/ev10.txt
  62. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-02/onsets/aomovie/run-3/sex_m.txt custom_timing_files/ev11.txt
  63. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-02/onsets/aomovie/run-3/vse_new.txt custom_timing_files/ev12.txt
  64. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-02/onsets/aomovie/run-3/vse_old.txt custom_timing_files/ev13.txt
  65. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-02/onsets/aomovie/run-3/vlo_ch.txt custom_timing_files/ev14.txt
  66. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-02/onsets/aomovie/run-3/vpe_new.txt custom_timing_files/ev15.txt
  67. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-02/onsets/aomovie/run-3/fg_ad_lrdiff.txt custom_timing_files/ev17.txt
  68. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-02/onsets/aomovie/run-3/fg_ad_rms.txt custom_timing_files/ev18.txt
  69. paste -d ' ' /data/project/studyforrest_ppa/inputs/phase1/sub002/BOLD/task001_run003/bold_dico_moco.txt > confoundevs.txt
  70. /usr/share/fsl/5.0/bin/feat_model design confoundevs.txt
  71. Warning: at least one EV is (close to) a linear combination of the others. You probably need to alter your design.
  72. (Design matrix is rank deficient - ratio of min:max eigenvalues in SVD of matrix is 9.3515e-18)
  73. Contrasts involving these combinations will be set to zero.
  74. /usr/share/fsl/5.0/bin/film_gls --in=filtered_func_data --rn=stats --pd=design.mat --thr=1000.0 --sa --ms=5 --con=design.con
  75. Log directory is: stats
  76. paradigm.getDesignMatrix().Nrows()=438
  77. paradigm.getDesignMatrix().Ncols()=42
  78. sizeTS=438
  79. numTS=77709
  80. Calculating residuals...
  81. Completed
  82. Estimating residual autocorrelation...
  83. Calculating raw AutoCorrs... Completed
  84. mode = 9646.17
  85. sig = 3279
  86. Spatially smoothing auto corr estimates
  87. ...................
  88. Completed
  89. Tukey M = 20
  90. Tukey estimates... Completed
  91. Completed
  92. Prewhitening and Computing PEs...
  93. Percentage done:
  94. 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,Completed
  95. Saving results...
  96. Completed
  97. /usr/share/fsl/5.0/bin/smoothest -d 396 -m mask -r stats/res4d > stats/smoothness
  98. </pre><hr>Post-stats<br><pre>
  99. /usr/share/fsl/5.0/bin/fslmaths stats/zstat1 -mas mask thresh_zstat1
  100. echo 77709 > thresh_zstat1.vol
  101. zstat1: DLH=0.302737 VOLUME=77709 RESELS=15.2601
  102. /usr/share/fsl/5.0/bin/fslmaths stats/zstat2 -mas mask thresh_zstat2
  103. echo 77709 > thresh_zstat2.vol
  104. zstat2: DLH=0.302737 VOLUME=77709 RESELS=15.2601
  105. /usr/share/fsl/5.0/bin/fslmaths stats/zstat3 -mas mask thresh_zstat3
  106. echo 77709 > thresh_zstat3.vol
  107. zstat3: DLH=0.302737 VOLUME=77709 RESELS=15.2601
  108. /usr/share/fsl/5.0/bin/fslmaths stats/zstat4 -mas mask thresh_zstat4
  109. echo 77709 > thresh_zstat4.vol
  110. zstat4: DLH=0.302737 VOLUME=77709 RESELS=15.2601
  111. /usr/share/fsl/5.0/bin/fslmaths stats/zstat5 -mas mask thresh_zstat5
  112. echo 77709 > thresh_zstat5.vol
  113. zstat5: DLH=0.302737 VOLUME=77709 RESELS=15.2601
  114. /usr/share/fsl/5.0/bin/fslmaths stats/zstat6 -mas mask thresh_zstat6
  115. echo 77709 > thresh_zstat6.vol
  116. zstat6: DLH=0.302737 VOLUME=77709 RESELS=15.2601
  117. /usr/share/fsl/5.0/bin/fslmaths stats/zstat7 -mas mask thresh_zstat7
  118. echo 77709 > thresh_zstat7.vol
  119. zstat7: DLH=0.302737 VOLUME=77709 RESELS=15.2601
  120. /usr/share/fsl/5.0/bin/fslmaths stats/zstat8 -mas mask thresh_zstat8
  121. echo 77709 > thresh_zstat8.vol
  122. zstat8: DLH=0.302737 VOLUME=77709 RESELS=15.2601
  123. /usr/share/fsl/5.0/bin/fslmaths stats/zstat9 -mas mask thresh_zstat9
  124. echo 77709 > thresh_zstat9.vol
  125. zstat9: DLH=0.302737 VOLUME=77709 RESELS=15.2601
  126. /usr/share/fsl/5.0/bin/fslmaths stats/zstat10 -mas mask thresh_zstat10
  127. echo 77709 > thresh_zstat10.vol
  128. zstat10: DLH=0.302737 VOLUME=77709 RESELS=15.2601
  129. /usr/share/fsl/5.0/bin/fslmaths stats/zstat11 -mas mask thresh_zstat11
  130. echo 77709 > thresh_zstat11.vol
  131. zstat11: DLH=0.302737 VOLUME=77709 RESELS=15.2601
  132. /usr/share/fsl/5.0/bin/fslmaths stats/zstat12 -mas mask thresh_zstat12
  133. echo 77709 > thresh_zstat12.vol
  134. zstat12: DLH=0.302737 VOLUME=77709 RESELS=15.2601
  135. /usr/share/fsl/5.0/bin/fslmaths stats/zstat13 -mas mask thresh_zstat13
  136. echo 77709 > thresh_zstat13.vol
  137. zstat13: DLH=0.302737 VOLUME=77709 RESELS=15.2601
  138. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat1 -c stats/cope1 -t 3.4 -p 0.05 -d 0.302737 --volume=77709 --othresh=thresh_zstat1 -o cluster_mask_zstat1 --connectivity=26 --olmax=lmax_zstat1.txt --scalarname=Z > cluster_zstat1.txt
  139. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat1
  140. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat2 -c stats/cope2 -t 3.4 -p 0.05 -d 0.302737 --volume=77709 --othresh=thresh_zstat2 -o cluster_mask_zstat2 --connectivity=26 --olmax=lmax_zstat2.txt --scalarname=Z > cluster_zstat2.txt
  141. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat2
  142. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat3 -c stats/cope3 -t 3.4 -p 0.05 -d 0.302737 --volume=77709 --othresh=thresh_zstat3 -o cluster_mask_zstat3 --connectivity=26 --olmax=lmax_zstat3.txt --scalarname=Z > cluster_zstat3.txt
  143. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat3
  144. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat4 -c stats/cope4 -t 3.4 -p 0.05 -d 0.302737 --volume=77709 --othresh=thresh_zstat4 -o cluster_mask_zstat4 --connectivity=26 --olmax=lmax_zstat4.txt --scalarname=Z > cluster_zstat4.txt
  145. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat4
  146. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat5 -c stats/cope5 -t 3.4 -p 0.05 -d 0.302737 --volume=77709 --othresh=thresh_zstat5 -o cluster_mask_zstat5 --connectivity=26 --olmax=lmax_zstat5.txt --scalarname=Z > cluster_zstat5.txt
  147. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat5
  148. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat6 -c stats/cope6 -t 3.4 -p 0.05 -d 0.302737 --volume=77709 --othresh=thresh_zstat6 -o cluster_mask_zstat6 --connectivity=26 --olmax=lmax_zstat6.txt --scalarname=Z > cluster_zstat6.txt
  149. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat6
  150. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat7 -c stats/cope7 -t 3.4 -p 0.05 -d 0.302737 --volume=77709 --othresh=thresh_zstat7 -o cluster_mask_zstat7 --connectivity=26 --olmax=lmax_zstat7.txt --scalarname=Z > cluster_zstat7.txt
  151. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat7
  152. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat8 -c stats/cope8 -t 3.4 -p 0.05 -d 0.302737 --volume=77709 --othresh=thresh_zstat8 -o cluster_mask_zstat8 --connectivity=26 --olmax=lmax_zstat8.txt --scalarname=Z > cluster_zstat8.txt
  153. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat8
  154. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat9 -c stats/cope9 -t 3.4 -p 0.05 -d 0.302737 --volume=77709 --othresh=thresh_zstat9 -o cluster_mask_zstat9 --connectivity=26 --olmax=lmax_zstat9.txt --scalarname=Z > cluster_zstat9.txt
  155. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat9
  156. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat10 -c stats/cope10 -t 3.4 -p 0.05 -d 0.302737 --volume=77709 --othresh=thresh_zstat10 -o cluster_mask_zstat10 --connectivity=26 --olmax=lmax_zstat10.txt --scalarname=Z > cluster_zstat10.txt
  157. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat10
  158. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat11 -c stats/cope11 -t 3.4 -p 0.05 -d 0.302737 --volume=77709 --othresh=thresh_zstat11 -o cluster_mask_zstat11 --connectivity=26 --olmax=lmax_zstat11.txt --scalarname=Z > cluster_zstat11.txt
  159. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat11
  160. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat12 -c stats/cope12 -t 3.4 -p 0.05 -d 0.302737 --volume=77709 --othresh=thresh_zstat12 -o cluster_mask_zstat12 --connectivity=26 --olmax=lmax_zstat12.txt --scalarname=Z > cluster_zstat12.txt
  161. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat12
  162. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat13 -c stats/cope13 -t 3.4 -p 0.05 -d 0.302737 --volume=77709 --othresh=thresh_zstat13 -o cluster_mask_zstat13 --connectivity=26 --olmax=lmax_zstat13.txt --scalarname=Z > cluster_zstat13.txt
  163. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat13
  164. /usr/share/fsl/5.0/bin/fslstats thresh_zstat1 -l 0.0001 -R 2>/dev/null
  165. 3.404105 4.387105
  166. /usr/share/fsl/5.0/bin/fslstats thresh_zstat2 -l 0.0001 -R 2>/dev/null
  167. 3.431951 4.056972
  168. /usr/share/fsl/5.0/bin/fslstats thresh_zstat3 -l 0.0001 -R 2>/dev/null
  169. 0.000000 0.000000
  170. /usr/share/fsl/5.0/bin/fslstats thresh_zstat4 -l 0.0001 -R 2>/dev/null
  171. 3.403987 4.799027
  172. /usr/share/fsl/5.0/bin/fslstats thresh_zstat5 -l 0.0001 -R 2>/dev/null
  173. 0.000000 0.000000
  174. /usr/share/fsl/5.0/bin/fslstats thresh_zstat6 -l 0.0001 -R 2>/dev/null
  175. 0.000000 0.000000
  176. /usr/share/fsl/5.0/bin/fslstats thresh_zstat7 -l 0.0001 -R 2>/dev/null
  177. 0.000000 0.000000
  178. /usr/share/fsl/5.0/bin/fslstats thresh_zstat8 -l 0.0001 -R 2>/dev/null
  179. 0.000000 0.000000
  180. /usr/share/fsl/5.0/bin/fslstats thresh_zstat9 -l 0.0001 -R 2>/dev/null
  181. 0.000000 0.000000
  182. /usr/share/fsl/5.0/bin/fslstats thresh_zstat10 -l 0.0001 -R 2>/dev/null
  183. 0.000000 0.000000
  184. /usr/share/fsl/5.0/bin/fslstats thresh_zstat11 -l 0.0001 -R 2>/dev/null
  185. 0.000000 0.000000
  186. /usr/share/fsl/5.0/bin/fslstats thresh_zstat12 -l 0.0001 -R 2>/dev/null
  187. 0.000000 0.000000
  188. /usr/share/fsl/5.0/bin/fslstats thresh_zstat13 -l 0.0001 -R 2>/dev/null
  189. 3.402808 4.579054
  190. Rendering using zmin=3.402808 zmax=4.799027
  191. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat1 3.402808 4.799027 rendered_thresh_zstat1
  192. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat1 -A 750 rendered_thresh_zstat1.png
  193. /bin/cp /usr/share/fsl/5.0/etc/luts/ramp.gif .ramp.gif
  194. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat2 3.402808 4.799027 rendered_thresh_zstat2
  195. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat2 -A 750 rendered_thresh_zstat2.png
  196. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat3 3.402808 4.799027 rendered_thresh_zstat3
  197. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat3 -A 750 rendered_thresh_zstat3.png
  198. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat4 3.402808 4.799027 rendered_thresh_zstat4
  199. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat4 -A 750 rendered_thresh_zstat4.png
  200. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat5 3.402808 4.799027 rendered_thresh_zstat5
  201. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat5 -A 750 rendered_thresh_zstat5.png
  202. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat6 3.402808 4.799027 rendered_thresh_zstat6
  203. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat6 -A 750 rendered_thresh_zstat6.png
  204. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat7 3.402808 4.799027 rendered_thresh_zstat7
  205. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat7 -A 750 rendered_thresh_zstat7.png
  206. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat8 3.402808 4.799027 rendered_thresh_zstat8
  207. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat8 -A 750 rendered_thresh_zstat8.png
  208. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat9 3.402808 4.799027 rendered_thresh_zstat9
  209. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat9 -A 750 rendered_thresh_zstat9.png
  210. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat10 3.402808 4.799027 rendered_thresh_zstat10
  211. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat10 -A 750 rendered_thresh_zstat10.png
  212. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat11 3.402808 4.799027 rendered_thresh_zstat11
  213. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat11 -A 750 rendered_thresh_zstat11.png
  214. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat12 3.402808 4.799027 rendered_thresh_zstat12
  215. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat12 -A 750 rendered_thresh_zstat12.png
  216. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat13 3.402808 4.799027 rendered_thresh_zstat13
  217. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat13 -A 750 rendered_thresh_zstat13.png
  218. mkdir -p tsplot ; /usr/share/fsl/5.0/bin/tsplot . -f filtered_func_data -o tsplot
  219. </pre><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br></BODY></HTML>