chaeusler
/
studyforrest-ppa-analysis


			
			
				
					
						
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<h2>Progress Report / Log</h2>
Started at Sat 14 Mar 2020 04:33:28 AM CET<p>
Feat main script<br><pre>

/bin/cp /data/project/studyforrest_ppa/code/3rd-lvl_audio-ppa-grp-12.fsf design.fsf

/usr/share/fsl/5.0/bin/feat_model design

mkdir .files;cp /usr/share/fsl/5.0/doc/fsl.css .files;cp -r /usr/share/fsl/5.0/doc/images .files/images

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat2_pre   /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/3rd-lvl/audio-ppa_c12_z3.4.gfeat/design.fsf -D /data/project/studyforrest_ppa/3rd-lvl/audio-ppa_c12_z3.4.gfeat -gfeatprep
1596

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 1596  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/3rd-lvl/audio-ppa_c12_z3.4.gfeat/cope1.feat/design.fsf -D /data/project/studyforrest_ppa/3rd-lvl/audio-ppa_c12_z3.4.gfeat/cope1.feat -I 1 -flame1
10365

/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat3b_flame -j 10365 -t ./.flame
16949

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 16949  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/3rd-lvl/audio-ppa_c12_z3.4.gfeat/cope1.feat/design.fsf -D /data/project/studyforrest_ppa/3rd-lvl/audio-ppa_c12_z3.4.gfeat/cope1.feat -flame3
18239

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 18239  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/3rd-lvl/audio-ppa_c12_z3.4.gfeat/cope1.feat/design.fsf -D /data/project/studyforrest_ppa/3rd-lvl/audio-ppa_c12_z3.4.gfeat/cope1.feat -poststats 1
19311

/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 19311  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/3rd-lvl/audio-ppa_c12_z3.4.gfeat/cope1.feat/design.fsf -D /data/project/studyforrest_ppa/3rd-lvl/audio-ppa_c12_z3.4.gfeat/cope1.feat -stop
20504

/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 20504  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/3rd-lvl/audio-ppa_c12_z3.4.gfeat/cope1.feat/design.fsf -D /data/project/studyforrest_ppa/3rd-lvl/audio-ppa_c12_z3.4.gfeat -stop
</pre><hr>Higher-level input files preparation<br><pre>

/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-01/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat

/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-02/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat

/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-03/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat

/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-04/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat

/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-05/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat

/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-06/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat

/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-09/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat

/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-14/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat

/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-15/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat

/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-16/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat

/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-17/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat

/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-18/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat

/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-19/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat

/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat

/usr/share/fsl/5.0/bin/fslmerge -t bg_image  /data/project/studyforrest_ppa/sub-01/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/example_func /data/project/studyforrest_ppa/sub-02/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/example_func /data/project/studyforrest_ppa/sub-03/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/example_func /data/project/studyforrest_ppa/sub-04/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/example_func /data/project/studyforrest_ppa/sub-05/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/example_func /data/project/studyforrest_ppa/sub-06/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/example_func /data/project/studyforrest_ppa/sub-09/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/example_func /data/project/studyforrest_ppa/sub-14/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/example_func /data/project/studyforrest_ppa/sub-15/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/example_func /data/project/studyforrest_ppa/sub-16/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/example_func /data/project/studyforrest_ppa/sub-17/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/example_func /data/project/studyforrest_ppa/sub-18/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/example_func /data/project/studyforrest_ppa/sub-19/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/example_func /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/example_func

/usr/share/fsl/5.0/bin/fslmaths bg_image -inm 1000 -Tmean bg_image -odt float

/usr/share/fsl/5.0/bin/fslmerge -t mask  /data/project/studyforrest_ppa/sub-01/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/mask /data/project/studyforrest_ppa/sub-02/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/mask /data/project/studyforrest_ppa/sub-03/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/mask /data/project/studyforrest_ppa/sub-04/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/mask /data/project/studyforrest_ppa/sub-05/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/mask /data/project/studyforrest_ppa/sub-06/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/mask /data/project/studyforrest_ppa/sub-09/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/mask /data/project/studyforrest_ppa/sub-14/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/mask /data/project/studyforrest_ppa/sub-15/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/mask /data/project/studyforrest_ppa/sub-16/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/mask /data/project/studyforrest_ppa/sub-17/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/mask /data/project/studyforrest_ppa/sub-18/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/mask /data/project/studyforrest_ppa/sub-19/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/mask /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/mask

/usr/share/fsl/5.0/bin/fslmaths mask -Tmin mask

/usr/share/fsl/5.0/bin/fslmerge -t mean_func  /data/project/studyforrest_ppa/sub-01/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/mean_func /data/project/studyforrest_ppa/sub-02/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/mean_func /data/project/studyforrest_ppa/sub-03/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/mean_func /data/project/studyforrest_ppa/sub-04/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/mean_func /data/project/studyforrest_ppa/sub-05/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/mean_func /data/project/studyforrest_ppa/sub-06/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/mean_func /data/project/studyforrest_ppa/sub-09/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/mean_func /data/project/studyforrest_ppa/sub-14/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/mean_func /data/project/studyforrest_ppa/sub-15/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/mean_func /data/project/studyforrest_ppa/sub-16/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/mean_func /data/project/studyforrest_ppa/sub-17/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/mean_func /data/project/studyforrest_ppa/sub-18/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/mean_func /data/project/studyforrest_ppa/sub-19/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/mean_func /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/mean_func

/usr/share/fsl/5.0/bin/fslmaths mean_func -Tmean mean_func

/usr/share/fsl/5.0/bin/fslmerge -t cope1  /data/project/studyforrest_ppa/sub-01/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/cope1.nii.gz /data/project/studyforrest_ppa/sub-02/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/cope1.nii.gz /data/project/studyforrest_ppa/sub-03/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/cope1.nii.gz /data/project/studyforrest_ppa/sub-04/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/cope1.nii.gz /data/project/studyforrest_ppa/sub-05/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/cope1.nii.gz /data/project/studyforrest_ppa/sub-06/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/cope1.nii.gz /data/project/studyforrest_ppa/sub-09/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/cope1.nii.gz /data/project/studyforrest_ppa/sub-14/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/cope1.nii.gz /data/project/studyforrest_ppa/sub-15/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/cope1.nii.gz /data/project/studyforrest_ppa/sub-16/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/cope1.nii.gz /data/project/studyforrest_ppa/sub-17/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/cope1.nii.gz /data/project/studyforrest_ppa/sub-18/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/cope1.nii.gz /data/project/studyforrest_ppa/sub-19/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/cope1.nii.gz /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/cope1.nii.gz

/usr/share/fsl/5.0/bin/fslmaths cope1 -mas mask cope1

echo 0.02944225125 > design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope1  /data/project/studyforrest_ppa/sub-01/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/varcope1.nii.gz /data/project/studyforrest_ppa/sub-02/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/varcope1.nii.gz /data/project/studyforrest_ppa/sub-03/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/varcope1.nii.gz /data/project/studyforrest_ppa/sub-04/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/varcope1.nii.gz /data/project/studyforrest_ppa/sub-05/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/varcope1.nii.gz /data/project/studyforrest_ppa/sub-06/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/varcope1.nii.gz /data/project/studyforrest_ppa/sub-09/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/varcope1.nii.gz /data/project/studyforrest_ppa/sub-14/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/varcope1.nii.gz /data/project/studyforrest_ppa/sub-15/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/varcope1.nii.gz /data/project/studyforrest_ppa/sub-16/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/varcope1.nii.gz /data/project/studyforrest_ppa/sub-17/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/varcope1.nii.gz /data/project/studyforrest_ppa/sub-18/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/varcope1.nii.gz /data/project/studyforrest_ppa/sub-19/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/varcope1.nii.gz /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/varcope1.nii.gz

/usr/share/fsl/5.0/bin/fslmaths varcope1 -mas mask varcope1

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t1  /data/project/studyforrest_ppa/sub-01/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/tdof_t1 /data/project/studyforrest_ppa/sub-02/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/tdof_t1 /data/project/studyforrest_ppa/sub-03/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/tdof_t1 /data/project/studyforrest_ppa/sub-04/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/tdof_t1 /data/project/studyforrest_ppa/sub-05/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/tdof_t1 /data/project/studyforrest_ppa/sub-06/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/tdof_t1 /data/project/studyforrest_ppa/sub-09/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/tdof_t1 /data/project/studyforrest_ppa/sub-14/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/tdof_t1 /data/project/studyforrest_ppa/sub-15/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/tdof_t1 /data/project/studyforrest_ppa/sub-16/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/tdof_t1 /data/project/studyforrest_ppa/sub-17/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/tdof_t1 /data/project/studyforrest_ppa/sub-18/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/tdof_t1 /data/project/studyforrest_ppa/sub-19/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/tdof_t1 /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-grp.gfeat/cope12.feat/stats/tdof_t1

/usr/share/fsl/5.0/bin/fslmaths tdof_t1 -mas mask tdof_t1
</pre><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br></BODY></HTML>