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@@ -75,11 +75,11 @@ More information on DataLad and how to use it can be found in the DataLad Handbo
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- All custom code and (templates of) FEAT design files are located in `code/`.
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- Segmented annotations are located in `events/segments/`.
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- Templates of event files for FEAT created from segmented annotations are located in `events/onsets/`.
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-- Individual subject folders (`sub-*/`) contain individualized FEAT setup files (i.e. GLM design files) for the first level analysis that estimated parameters for each fMRI run of each subject seperately (e.g. 'run-1_1st_audio-ppa-grp.fsf') and for the second level analysis that averaged parameter estimates across runs for every subject (e.g. `2nd-lvl_audio-ppa-grp.fsf`).
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+- Individual subject folders (`sub-*/`) contain individualized FEAT setup files (i.e. GLM design files) for the first level analyses that estimated parameters for each fMRI run of each subject seperately (e.g. 'run-1_1st_audio-ppa-grp.fsf') and for the second level analyses that averaged parameter estimates across runs of every subject (e.g. `2nd-lvl_audio-ppa-grp.fsf`).
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- Individual subject folders (`sub-*`) also contain the results of the first level (e.g. `run-1_audio-ppa-grp.feat`) and second level analyses (e.g. `2nd-lvl_audio-ppa-grp.gfeat`).
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- Results of first level analyses (e.g. `sub-01/run-1_audio-ppa-grp.feat`) contain thresholded (`thresh_zstat*.nii.gz`) and unthresholded (`stats/zstat*.nii.gz`) z-maps for every contrast (contrast of parameter estimates; COPE), parameter estimates for every regressor and temporal derivative (`stats/pe*.nii.gz`), and the anatomical image that was used as standard space (`reg/standard.nii.gz`).
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- Results of second level analyses (e.g. `sub-01/2nd-lvl_audio-ppa-grp.gfeat`) contain thresholded (`cope*.feat/thresh_zstat1.nii.gz`) and unthresholded (`cope*.feat/stats/zstat1.nii.gz`) z-maps for every contrast.
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-- Results of third level (group) GLM analyses that averaged parameter estimates across subjects are located in `3rd-lvl/`.
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+- Results of third level GLM analyses that averaged parameter estimates across subjects are located in `3rd-lvl/`.
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- Each folder (e.g. `3rd-lvl/audio-ppa_c1_z3.4.gfeat`) contains the thresholded (`cope1.feat/thresh_zstat1.nii.gz`) and unthresholded (`cope1.feat/stats/zstat1.nii.gz`) z-maps of the corresponding contrast.
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- A detailed descripten of FEAT (output) directories can be found in the [FEAT UserGuide](https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FEAT/UserGuide#FEAT_Output).
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