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wmparc.stats

wmparc.stats 11 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject sub-02 --surf-wm-vol --ctab /opt/freesurfer/WMParcStatsLUT.txt --etiv 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname 3dcbcfbafa99
    8. 

  8. # machine  x86_64
    9. 

  9. # user     root
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /data/out
    13. 

  13. # subjectname sub-02
    14. 

  14. # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 220453.080648, mm^3
    15. 

  15. # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 219008.859782, mm^3
    16. 

  16. # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 439461.940430, mm^3
    17. 

  17. # Measure Mask, MaskVol, Mask Volume, 1428003.000000, mm^3
    18. 

  18. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1373373.264927, mm^3
    19. 

  19. # SegVolFile mri/wmparc.mgz 
    20. 

  20. # SegVolFileTimeStamp  2017/01/14 14:59:20 
    21. 

  21. # ColorTable /opt/freesurfer/WMParcStatsLUT.txt 
    22. 

  22. # ColorTableTimeStamp 2013/05/14 00:31:02 
    23. 

  23. # InVolFile  mri/norm.mgz 
    24. 

  24. # InVolFileTimeStamp  2017/01/14 09:24:53 
    25. 

  25. # InVolFrame 0 
    26. 

  26. # PVVolFile  mri/norm.mgz 
    27. 

  27. # PVVolFileTimeStamp  2017/01/14 09:24:53 
    28. 

  28. # ExcludeSegId 0 
    29. 

  29. # Only reporting non-empty segmentations
    30. 

  30. # VoxelVolume_mm3 1 
    31. 

  31. # TableCol  1 ColHeader Index 
    32. 

  32. # TableCol  1 FieldName Index 
    33. 

  33. # TableCol  1 Units     NA 
    34. 

  34. # TableCol  2 ColHeader SegId 
    35. 

  35. # TableCol  2 FieldName Segmentation Id
    36. 

  36. # TableCol  2 Units     NA
    37. 

  37. # TableCol  3 ColHeader NVoxels 
    38. 

  38. # TableCol  3 FieldName Number of Voxels
    39. 

  39. # TableCol  3 Units     unitless
    40. 

  40. # TableCol  4 ColHeader Volume_mm3
    41. 

  41. # TableCol  4 FieldName Volume
    42. 

  42. # TableCol  4 Units     mm^3
    43. 

  43. # TableCol  5 ColHeader StructName
    44. 

  44. # TableCol  5 FieldName Structure Name
    45. 

  45. # TableCol  5 Units     NA
    46. 

  46. # TableCol  6 ColHeader normMean 
    47. 

  47. # TableCol  6 FieldName Intensity normMean
    48. 

  48. # TableCol  6 Units     MR
    49. 

  49. # TableCol  7 ColHeader normStdDev
    50. 

  50. # TableCol  7 FieldName Itensity normStdDev
    51. 

  51. # TableCol  7 Units     MR
    52. 

  52. # TableCol  8 ColHeader normMin
    53. 

  53. # TableCol  8 FieldName Intensity normMin
    54. 

  54. # TableCol  8 Units     MR
    55. 

  55. # TableCol  9 ColHeader normMax
    56. 

  56. # TableCol  9 FieldName Intensity normMax
    57. 

  57. # TableCol  9 Units     MR
    58. 

  58. # TableCol 10 ColHeader normRange
    59. 

  59. # TableCol 10 FieldName Intensity normRange
    60. 

  60. # TableCol 10 Units     MR
    61. 

  61. # NRows 70 
    62. 

  62. # NTableCols 10 
    63. 

  63. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    64. 

  64.   1 3001      2733     2732.8  wm-lh-bankssts                   104.4472     9.7021    72.0000   124.0000    52.0000 
    65. 

  65.   2 3002      2024     2024.3  wm-lh-caudalanteriorcingulate    101.6717    10.2087    60.0000   123.0000    63.0000 
    66. 

  66.   3 3003      6460     6460.5  wm-lh-caudalmiddlefrontal         97.9199    10.6122    66.0000   118.0000    52.0000 
    67. 

  67.   4 3005      2474     2474.3  wm-lh-cuneus                      94.5118    11.2382    67.0000   117.0000    50.0000 
    68. 

  68.   5 3006       708      708.4  wm-lh-entorhinal                  80.1014     8.8623    59.0000   100.0000    41.0000 
    69. 

  69.   6 3007      6236     6235.7  wm-lh-fusiform                    96.4794    12.4893    57.0000   126.0000    69.0000 
    70. 

  70.   7 3008     11011    11011.4  wm-lh-inferiorparietal           103.5473    11.1182    68.0000   127.0000    59.0000 
    71. 

  71.   8 3009      6104     6104.2  wm-lh-inferiortemporal            96.7031    13.3251    57.0000   125.0000    68.0000 
    72. 

  72.   9 3010      4058     4057.7  wm-lh-isthmuscingulate           104.7437    14.3666    35.0000   131.0000    96.0000 
    73. 

  73.  10 3011      8960     8959.7  wm-lh-lateraloccipital            99.1300    11.7633    23.0000   126.0000   103.0000 
    74. 

  74.  11 3012      6188     6188.5  wm-lh-lateralorbitofrontal        93.2476    12.0047    47.0000   118.0000    71.0000 
    75. 

  75.  12 3013      5362     5362.0  wm-lh-lingual                     93.4294    12.6871    37.0000   126.0000    89.0000 
    76. 

  76.  13 3014      2770     2770.3  wm-lh-medialorbitofrontal         91.0290    12.5951    39.0000   115.0000    76.0000 
    77. 

  77.  14 3015      5412     5411.9  wm-lh-middletemporal              99.4133    12.3309    63.0000   127.0000    64.0000 
    78. 

  78.  15 3016      1674     1674.0  wm-lh-parahippocampal             89.3613    10.0445    63.0000   118.0000    55.0000 
    79. 

  79.  16 3017      3073     3073.2  wm-lh-paracentral                 95.8908    10.7994    63.0000   117.0000    54.0000 
    80. 

  80.  17 3018      3926     3926.4  wm-lh-parsopercularis             96.6933    11.9192    60.0000   118.0000    58.0000 
    81. 

  81.  18 3019       833      832.7  wm-lh-parsorbitalis               89.8950    11.8934    64.0000   115.0000    51.0000 
    82. 

  82.  19 3020      2101     2100.9  wm-lh-parstriangularis            96.4419    10.8146    64.0000   116.0000    52.0000 
    83. 

  83.  20 3021      3313     3313.3  wm-lh-pericalcarine               91.9217    18.2092     5.0000   123.0000   118.0000 
    84. 

  84.  21 3022      7623     7622.9  wm-lh-postcentral                 97.7205    10.8374    66.0000   125.0000    59.0000 
    85. 

  85.  22 3023      3658     3658.5  wm-lh-posteriorcingulate         102.8865    10.6940    39.0000   124.0000    85.0000 
    86. 

  86.  23 3024     13037    13036.9  wm-lh-precentral                  97.0030    10.2434    61.0000   122.0000    61.0000 
    87. 

  87.  24 3025      8700     8700.1  wm-lh-precuneus                  101.2585    12.0136    18.0000   124.0000   106.0000 
    88. 

  88.  25 3026      2619     2619.3  wm-lh-rostralanteriorcingulate   100.8133    10.1276    52.0000   120.0000    68.0000 
    89. 

  89.  26 3027     11101    11101.2  wm-lh-rostralmiddlefrontal        97.6218    11.7814    63.0000   123.0000    60.0000 
    90. 

  90.  27 3028     17799    17799.2  wm-lh-superiorfrontal             95.2503    11.3887    41.0000   122.0000    81.0000 
    91. 

  91.  28 3029     11805    11805.1  wm-lh-superiorparietal           100.6913    11.1465    65.0000   123.0000    58.0000 
    92. 

  92.  29 3030      6989     6988.7  wm-lh-superiortemporal            97.0000    12.2645    59.0000   128.0000    69.0000 
    93. 

  93.  30 3031      7053     7053.5  wm-lh-supramarginal              103.9972    11.9231    65.0000   128.0000    63.0000 
    94. 

  94.  31 3032       253      253.4  wm-lh-frontalpole                 86.7323    10.7323    61.0000   111.0000    50.0000 
    95. 

  95.  32 3033       841      840.9  wm-lh-temporalpole                82.2316    11.0383    59.0000   123.0000    64.0000 
    96. 

  96.  33 3034       960      960.0  wm-lh-transversetemporal          98.4918    11.4123    67.0000   118.0000    51.0000 
    97. 

  97.  34 3035      6608     6608.3  wm-lh-insula                      94.8703    13.2998    16.0000   122.0000   106.0000 
    98. 

  98.  35 4001      2576     2575.7  wm-rh-bankssts                   103.8876     9.8097    73.0000   120.0000    47.0000 
    99. 

  99.  36 4002      2967     2966.7  wm-rh-caudalanteriorcingulate    102.4097    10.9879    45.0000   124.0000    79.0000 
    100. 

  100.  37 4003      5722     5721.8  wm-rh-caudalmiddlefrontal         96.9871     9.9840    64.0000   117.0000    53.0000 
    101. 

  101.  38 4005      2554     2554.3  wm-rh-cuneus                      96.2271    10.4912    67.0000   119.0000    52.0000 
    102. 

  102.  39 4006       556      555.9  wm-rh-entorhinal                  77.9671     8.2594    59.0000   100.0000    41.0000 
    103. 

  103.  40 4007      6459     6459.2  wm-rh-fusiform                    95.2318    13.7306    51.0000   125.0000    74.0000 
    104. 

  104.  41 4008     11881    11880.7  wm-rh-inferiorparietal           101.3710    11.4479    65.0000   123.0000    58.0000 
    105. 

  105.  42 4009      5859     5859.2  wm-rh-inferiortemporal            94.5713    13.3097    55.0000   120.0000    65.0000 
    106. 

  106.  43 4010      3380     3379.8  wm-rh-isthmuscingulate           110.0635    10.7500    31.0000   133.0000   102.0000 
    107. 

  107.  44 4011      9302     9301.6  wm-rh-lateraloccipital            98.7145    10.6374    44.0000   121.0000    77.0000 
    108. 

  108.  45 4012      6263     6262.8  wm-rh-lateralorbitofrontal        92.8378    12.3600    28.0000   120.0000    92.0000 
    109. 

  109.  46 4013      5390     5390.5  wm-rh-lingual                     95.5639    13.8975     6.0000   129.0000   123.0000 
    110. 

  110.  47 4014      2957     2957.3  wm-rh-medialorbitofrontal         94.3037    10.7470    54.0000   115.0000    61.0000 
    111. 

  111.  48 4015      5477     5476.6  wm-rh-middletemporal              94.1454    12.7145    59.0000   122.0000    63.0000 
    112. 

  112.  49 4016      1923     1923.2  wm-rh-parahippocampal             91.5062    10.8224    41.0000   116.0000    75.0000 
    113. 

  113.  50 4017      4469     4468.8  wm-rh-paracentral                 97.4065     9.4827    58.0000   121.0000    63.0000 
    114. 

  114.  51 4018      3550     3549.9  wm-rh-parsopercularis             95.7741    11.4320    64.0000   119.0000    55.0000 
    115. 

  115.  52 4019       928      927.5  wm-rh-parsorbitalis               86.0628     9.9819    61.0000   111.0000    50.0000 
    116. 

  116.  53 4020      2418     2418.0  wm-rh-parstriangularis            95.8305    10.7435    67.0000   117.0000    50.0000 
    117. 

  117.  54 4021      2963     2963.3  wm-rh-pericalcarine               91.4070    16.5280     4.0000   121.0000   117.0000 
    118. 

  118.  55 4022      6048     6047.9  wm-rh-postcentral                 95.1232    10.5199    67.0000   123.0000    56.0000 
    119. 

  119.  56 4023      3782     3782.4  wm-rh-posteriorcingulate         103.7828    11.2515    47.0000   131.0000    84.0000 
    120. 

  120.  57 4024     13127    13126.6  wm-rh-precentral                  96.2325     9.5739    63.0000   120.0000    57.0000 
    121. 

  121.  58 4025      8939     8938.6  wm-rh-precuneus                  101.8983    11.7031    65.0000   126.0000    61.0000 
    122. 

  122.  59 4026      1597     1596.7  wm-rh-rostralanteriorcingulate   100.9415    12.4249    54.0000   127.0000    73.0000 
    123. 

  123.  60 4027     11665    11665.4  wm-rh-rostralmiddlefrontal        96.6380    11.6318    61.0000   119.0000    58.0000 
    124. 

  124.  61 4028     16078    16078.2  wm-rh-superiorfrontal             95.4893    10.9080    54.0000   124.0000    70.0000 
    125. 

  125.  62 4029     11718    11718.2  wm-rh-superiorparietal           100.1039    11.1048    68.0000   124.0000    56.0000 
    126. 

  126.  63 4030      6077     6077.5  wm-rh-superiortemporal            95.0911    12.0850    58.0000   123.0000    65.0000 
    127. 

  127.  64 4031      7097     7096.6  wm-rh-supramarginal              102.0712    11.2598    68.0000   126.0000    58.0000 
    128. 

  128.  65 4032       307      307.2  wm-rh-frontalpole                 89.5033    10.2152    64.0000   117.0000    53.0000 
    129. 

  129.  66 4033       542      541.8  wm-rh-temporalpole                74.7566     7.5967    57.0000    93.0000    36.0000 
    130. 

  130.  67 4034       667      666.6  wm-rh-transversetemporal          99.5022    10.0470    74.0000   119.0000    45.0000 
    131. 

  131.  68 4035      6984     6984.0  wm-rh-insula                      93.5469    13.7762    43.0000   122.0000    79.0000 
    132. 

  132.  69 5001     32836    32836.3  Left-UnsegmentedWhiteMatter      103.4276    10.8970     7.0000   126.0000   119.0000 
    133. 

  133.  70 5002     33453    33452.7  Right-UnsegmentedWhiteMatter     104.4066    10.7105    10.0000   129.0000   119.0000 
    134.