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- $Id: make_average_surface,v 1.45 2008/02/21 20:39:49 greve Exp $
- Tue Sep 9 09:30:06 EDT 2008
- /autofs/space/rock_004/users/hires/recons/scripts
- setenv SUBJECTS_DIR /space/rock/4/users/hires/recons
- output ddir is /space/rock/4/users/hires/recons
- uid=5499(fischl) gid=5499(fischl) groups=160(fsdev),1005(cma),1013(p41),1021(stroke),1031(daragp),1046(recon),1048(seq),1050(blackrgp),1055(cagn),1071(birn),1085(reconx),1098(retinopy),1102(ellengp),1446(nandgp),1467(cardstr),3048(acqp41),5499(fischl)
- ====================
- make_average_surface
- ====================
- Tue Sep 9 09:30:06 EDT 2008
- /autofs/space/rock_004/users/hires/recons/scripts
- /homes/4/fischl/dev/freesurfer/bin/make_average_surface
- --subjects I7_ras_recon I9_recon I14 I15 G1 I20_lh_recon I21_lh_recon I23_LH I25_lh_recon --out lh.EC_average --sdir /space/rock/4/users/hires/recons --surf-reg sphere.new.reg
- input subjects: I7_ras_recon I9_recon I14 I15 G1 I20_lh_recon I21_lh_recon I23_LH I25_lh_recon
- output subject: lh.EC_average
- mri_add_xform_to_header -c auto /space/rock/4/users/hires/recons/lh.EC_average/mri/mni305.cor.mgz /space/rock/4/users/hires/recons/lh.EC_average/mri/mni305.cor.mgz
- INFO: extension is mgz
- #@# Making lh registration template ---------
- /autofs/space/rock_004/users/hires/recons/lh.EC_average
- mris_make_template -norot -annot aparc lh sphere.new.reg I7_ras_recon I9_recon I14 I15 G1 I20_lh_recon I21_lh_recon I23_LH I25_lh_recon lh.reg.template.tif
- not aligning hemispheres before averaging.
- zeroing medial wall in aparc
- creating new parameterization...
- processing subject I7_ras_recon (1 of 9)
- reading spherical surface /space/rock/4/users/hires/recons/I7_ras_recon/surf/lh.sphere.new.reg...
- reading colortable from annotation file...
- colortable with 35 entries read (originally /autofs/space/birn_044/users/buckner_surf_atlas_rebuild/scripts/colortable_final.txt)
- ripping medial wall...
- computing parameterization for surface /space/rock/4/users/hires/recons/I7_ras_recon/surf/lh.inflated.H...
- curvature mean = -0.118, std = 0.848
- computing parameterization for surface /space/rock/4/users/hires/recons/I7_ras_recon/surf/lh.sulc...
- computing parameterization for surface /space/rock/4/users/hires/recons/I7_ras_recon/surf/lh.smoothwm...
- processing subject I9_recon (2 of 9)
- reading spherical surface /space/rock/4/users/hires/recons/I9_recon/surf/lh.sphere.new.reg...
- reading colortable from annotation file...
- colortable with 35 entries read (originally /autofs/space/birn_044/users/buckner_surf_atlas_rebuild/scripts/colortable_final.txt)
- curvature mean = -0.022, std = 0.551
- curvature mean = -0.140, std = 1.929
- ripping medial wall...
- computing parameterization for surface /space/rock/4/users/hires/recons/I9_recon/surf/lh.inflated.H...
- curvature mean = -0.083, std = 0.936
- computing parameterization for surface /space/rock/4/users/hires/recons/I9_recon/surf/lh.sulc...
- computing parameterization for surface /space/rock/4/users/hires/recons/I9_recon/surf/lh.smoothwm...
- processing subject I14 (3 of 9)
- reading spherical surface /space/rock/4/users/hires/recons/I14/surf/lh.sphere.new.reg...
- reading colortable from annotation file...
- colortable with 35 entries read (originally /autofs/space/birn_044/users/buckner_surf_atlas_rebuild/scripts/colortable_final.txt)
- curvature mean = -0.014, std = 0.562
- curvature mean = -0.158, std = 2.640
- ripping medial wall...
- computing parameterization for surface /space/rock/4/users/hires/recons/I14/surf/lh.inflated.H...
- curvature mean = -0.092, std = 0.906
- computing parameterization for surface /space/rock/4/users/hires/recons/I14/surf/lh.sulc...
- computing parameterization for surface /space/rock/4/users/hires/recons/I14/surf/lh.smoothwm...
- processing subject I15 (4 of 9)
- reading spherical surface /space/rock/4/users/hires/recons/I15/surf/lh.sphere.new.reg...
- reading colortable from annotation file...
- colortable with 35 entries read (originally /autofs/space/birn_044/users/buckner_surf_atlas_rebuild/scripts/colortable_final.txt)
- curvature mean = -0.016, std = 0.541
- curvature mean = -0.158, std = 2.105
- ripping medial wall...
- computing parameterization for surface /space/rock/4/users/hires/recons/I15/surf/lh.inflated.H...
- curvature mean = -0.096, std = 0.884
- computing parameterization for surface /space/rock/4/users/hires/recons/I15/surf/lh.sulc...
- computing parameterization for surface /space/rock/4/users/hires/recons/I15/surf/lh.smoothwm...
- processing subject G1 (5 of 9)
- reading spherical surface /space/rock/4/users/hires/recons/G1/surf/lh.sphere.new.reg...
- reading colortable from annotation file...
- colortable with 35 entries read (originally /autofs/space/birn_044/users/buckner_surf_atlas_rebuild/scripts/colortable_final.txt)
- curvature mean = -0.019, std = 0.560
- curvature mean = -0.151, std = 2.822
- ripping medial wall...
- computing parameterization for surface /space/rock/4/users/hires/recons/G1/surf/lh.inflated.H...
- curvature mean = -0.091, std = 0.919
- computing parameterization for surface /space/rock/4/users/hires/recons/G1/surf/lh.sulc...
- computing parameterization for surface /space/rock/4/users/hires/recons/G1/surf/lh.smoothwm...
- processing subject I20_lh_recon (6 of 9)
- reading spherical surface /space/rock/4/users/hires/recons/I20_lh_recon/surf/lh.sphere.new.reg...
- reading colortable from annotation file...
- colortable with 35 entries read (originally /autofs/space/birn_044/users/buckner_surf_atlas_rebuild/scripts/colortable_final.txt)
- curvature mean = -0.016, std = 0.520
- curvature mean = -0.106, std = 7.065
- ripping medial wall...
- computing parameterization for surface /space/rock/4/users/hires/recons/I20_lh_recon/surf/lh.inflated.H...
- curvature mean = -0.092, std = 0.883
- computing parameterization for surface /space/rock/4/users/hires/recons/I20_lh_recon/surf/lh.sulc...
- computing parameterization for surface /space/rock/4/users/hires/recons/I20_lh_recon/surf/lh.smoothwm...
- processing subject I21_lh_recon (7 of 9)
- reading spherical surface /space/rock/4/users/hires/recons/I21_lh_recon/surf/lh.sphere.new.reg...
- reading colortable from annotation file...
- colortable with 35 entries read (originally /autofs/space/birn_044/users/buckner_surf_atlas_rebuild/scripts/colortable_final.txt)
- curvature mean = -0.018, std = 0.543
- curvature mean = -0.166, std = 3.183
- ripping medial wall...
- computing parameterization for surface /space/rock/4/users/hires/recons/I21_lh_recon/surf/lh.inflated.H...
- curvature mean = -0.070, std = 0.918
- computing parameterization for surface /space/rock/4/users/hires/recons/I21_lh_recon/surf/lh.sulc...
- computing parameterization for surface /space/rock/4/users/hires/recons/I21_lh_recon/surf/lh.smoothwm...
- processing subject I23_LH (8 of 9)
- reading spherical surface /space/rock/4/users/hires/recons/I23_LH/surf/lh.sphere.new.reg...
- reading colortable from annotation file...
- colortable with 35 entries read (originally /autofs/space/birn_044/users/buckner_surf_atlas_rebuild/scripts/colortable_final.txt)
- curvature mean = -0.010, std = 0.571
- curvature mean = -0.026, std = 7.618
- ripping medial wall...
- computing parameterization for surface /space/rock/4/users/hires/recons/I23_LH/surf/lh.inflated.H...
- curvature mean = 0.004, std = 0.912
- computing parameterization for surface /space/rock/4/users/hires/recons/I23_LH/surf/lh.sulc...
- computing parameterization for surface /space/rock/4/users/hires/recons/I23_LH/surf/lh.smoothwm...
- processing subject I25_lh_recon (9 of 9)
- reading spherical surface /space/rock/4/users/hires/recons/I25_lh_recon/surf/lh.sphere.new.reg...
- reading colortable from annotation file...
- colortable with 35 entries read (originally /space/amaebi/26/users/buckner_cortical_atlas/scripts/colortable_final.txt)
- curvature mean = 0.014, std = 0.560
- curvature mean = -0.153, std = 3.106
- ripping medial wall...
- computing parameterization for surface /space/rock/4/users/hires/recons/I25_lh_recon/surf/lh.inflated.H...
- curvature mean = -0.063, std = 0.966
- computing parameterization for surface /space/rock/4/users/hires/recons/I25_lh_recon/surf/lh.sulc...
- computing parameterization for surface /space/rock/4/users/hires/recons/I25_lh_recon/surf/lh.smoothwm...
- writing updated template with 9 subjects to lh.reg.template.tif...
- curvature mean = -0.009, std = 0.556
- curvature mean = -0.087, std = 1.254
- #@# Making lh annotation ---------------------
- Tue Sep 9 09:32:11 EDT 2008
- mris_ca_label -ml-annot lh.curvature.buckner40.filled.desikan_killiany.2007-06-20.gcs 7 label/lh.aparc.annot
- /autofs/space/rock_004/users/hires/recons/lh.EC_average
- ML Label: lh.curvature.buckner40.filled.desikan_killiany.2007-06-20.gcs 7 label/lh.aparc.annot
- Reading icosahedron /homes/4/fischl/dev/freesurfer/lib/bem/ic7.tri
- Reading gcsa from /homes/4/fischl/dev/freesurfer/average/lh.curvature.buckner40.filled.desikan_killiany.2007-06-20.gcs
- reading color table from GCSA file....
- average std = 2.1 using min determinant for regularization = 0.044
- 0 singular and 372 ill-conditioned covariance matrices regularized
- Building most likely labels
- Filtering labels
- 2 filter iterations complete (2 requested, 378 changed)
- writing colortable into annotation file...
- mris_ca_label -ml-annot lh.atlas2005_simple.gcs 7 label/lh.aparc.a2005s.annot
- /autofs/space/rock_004/users/hires/recons/lh.EC_average
- ML Label: lh.atlas2005_simple.gcs 7 label/lh.aparc.a2005s.annot
- Reading icosahedron /homes/4/fischl/dev/freesurfer/lib/bem/ic7.tri
- Reading gcsa from /homes/4/fischl/dev/freesurfer/average/lh.atlas2005_simple.gcs
- reading color table from GCSA file....
- average std = 4.5 0.2 using min determinant for regularization = 0.000
- 0 singular and 1215 ill-conditioned covariance matrices regularized
- Building most likely labels
- Filtering labels
- 2 filter iterations complete (2 requested, 1804 changed)
- writing colortable into annotation file...
- #@# Making average lh.orig surface ---------------------
- Tue Sep 9 09:32:33 EDT 2008
- /autofs/space/rock_004/users/hires/recons/lh.EC_average
- mris_make_average_surface -i 7 -o orig -sdir-out /space/rock/4/users/hires/recons lh orig_avg sphere.new.reg lh.EC_average I7_ras_recon I9_recon I14 I15 G1 I20_lh_recon I21_lh_recon I23_LH I25_lh_recon
- reading vertex positions from orig...
- ---------------------------------------------------
- hemi = lh
- avg_surf_name = orig_avg
- canon_surf_name = sphere.new.reg
- out_sname = lh.EC_average
- xform = talairach.xfm
- ---------------------------------------------------
- ---------------------------------------------------
- #@# processing subject 1/9 I7_ras_recon...
- Reading /space/rock/4/users/hires/recons/I7_ras_recon/surf/lh.sphere.new.reg
- Read /space/rock/4/users/hires/recons/I7_ras_recon/mri/T1.mgz
- Surface area: 728.2 cm^2
- Applying linear transform
- ---------------------------------------------------
- #@# processing subject 2/9 I9_recon...
- Reading /space/rock/4/users/hires/recons/I9_recon/surf/lh.sphere.new.reg
- Read /space/rock/4/users/hires/recons/I9_recon/mri/T1
- Surface area: 812.7 cm^2
- Applying linear transform
- ---------------------------------------------------
- #@# processing subject 3/9 I14...
- Reading /space/rock/4/users/hires/recons/I14/surf/lh.sphere.new.reg
- Read /space/rock/4/users/hires/recons/I14/mri/T1
- Surface area: 759.9 cm^2
- Applying linear transform
- ---------------------------------------------------
- #@# processing subject 4/9 I15...
- Reading /space/rock/4/users/hires/recons/I15/surf/lh.sphere.new.reg
- Read /space/rock/4/users/hires/recons/I15/mri/T1.mgz
- Surface area: 706.8 cm^2
- Applying linear transform
- ---------------------------------------------------
- #@# processing subject 5/9 G1...
- Reading /space/rock/4/users/hires/recons/G1/surf/lh.sphere.new.reg
- Read /space/rock/4/users/hires/recons/G1/mri/T1.mgz
- Surface area: 914.5 cm^2
- Applying linear transform
- ---------------------------------------------------
- #@# processing subject 6/9 I20_lh_recon...
- Reading /space/rock/4/users/hires/recons/I20_lh_recon/surf/lh.sphere.new.reg
- Read /space/rock/4/users/hires/recons/I20_lh_recon/mri/T1.mgz
- Surface area: 794.3 cm^2
- Applying linear transform
- ---------------------------------------------------
- #@# processing subject 7/9 I21_lh_recon...
- Reading /space/rock/4/users/hires/recons/I21_lh_recon/surf/lh.sphere.new.reg
- Read /space/rock/4/users/hires/recons/I21_lh_recon/mri/T1.mgz
- Surface area: 1008.5 cm^2
- Applying linear transform
- ---------------------------------------------------
- #@# processing subject 8/9 I23_LH...
- Reading /space/rock/4/users/hires/recons/I23_LH/surf/lh.sphere.new.reg
- Read /space/rock/4/users/hires/recons/I23_LH/mri/T1.mgz
- Surface area: 913.3 cm^2
- Applying linear transform
- ---------------------------------------------------
- #@# processing subject 9/9 I25_lh_recon...
- Reading /space/rock/4/users/hires/recons/I25_lh_recon/surf/lh.sphere.new.reg
- Read /space/rock/4/users/hires/recons/I25_lh_recon/mri/T1.mgz
- Surface area: 942.6 cm^2
- Applying linear transform
- Finished loading all data
- Avg surf area = 842.308 cm
- Reading icosahedron from /homes/4/fischl/dev/freesurfer/lib/bem/ic7.tri...
- writing average canonical surface to /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.sphere.new.reg
- setting group surface area to be 842.3 cm^2 (scale=1.20)
- writing average orig_avg surface to /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.orig_avg
- writing group avg surface area 842 cm^2 into surface file
- mris_make_average_surface done
- #@# Making average lh.white surface ---------------------
- Tue Sep 9 09:34:31 EDT 2008
- /autofs/space/rock_004/users/hires/recons/lh.EC_average
- mris_make_average_surface -i 7 -o white -sdir-out /space/rock/4/users/hires/recons lh white_avg sphere.new.reg lh.EC_average I7_ras_recon I9_recon I14 I15 G1 I20_lh_recon I21_lh_recon I23_LH I25_lh_recon
- reading vertex positions from white...
- ---------------------------------------------------
- hemi = lh
- avg_surf_name = white_avg
- canon_surf_name = sphere.new.reg
- out_sname = lh.EC_average
- xform = talairach.xfm
- ---------------------------------------------------
- ---------------------------------------------------
- #@# processing subject 1/9 I7_ras_recon...
- Reading /space/rock/4/users/hires/recons/I7_ras_recon/surf/lh.sphere.new.reg
- Read /space/rock/4/users/hires/recons/I7_ras_recon/mri/T1.mgz
- Surface area: 678.5 cm^2
- Applying linear transform
- ---------------------------------------------------
- #@# processing subject 2/9 I9_recon...
- Reading /space/rock/4/users/hires/recons/I9_recon/surf/lh.sphere.new.reg
- Read /space/rock/4/users/hires/recons/I9_recon/mri/T1
- Surface area: 783.6 cm^2
- Applying linear transform
- ---------------------------------------------------
- #@# processing subject 3/9 I14...
- Reading /space/rock/4/users/hires/recons/I14/surf/lh.sphere.new.reg
- Read /space/rock/4/users/hires/recons/I14/mri/T1
- Surface area: 759.9 cm^2
- Applying linear transform
- ---------------------------------------------------
- #@# processing subject 4/9 I15...
- Reading /space/rock/4/users/hires/recons/I15/surf/lh.sphere.new.reg
- Read /space/rock/4/users/hires/recons/I15/mri/T1.mgz
- Surface area: 706.8 cm^2
- Applying linear transform
- ---------------------------------------------------
- #@# processing subject 5/9 G1...
- Reading /space/rock/4/users/hires/recons/G1/surf/lh.sphere.new.reg
- Read /space/rock/4/users/hires/recons/G1/mri/T1.mgz
- Surface area: 914.5 cm^2
- Applying linear transform
- ---------------------------------------------------
- #@# processing subject 6/9 I20_lh_recon...
- Reading /space/rock/4/users/hires/recons/I20_lh_recon/surf/lh.sphere.new.reg
- Read /space/rock/4/users/hires/recons/I20_lh_recon/mri/T1.mgz
- Surface area: 700.3 cm^2
- Applying linear transform
- ---------------------------------------------------
- #@# processing subject 7/9 I21_lh_recon...
- Reading /space/rock/4/users/hires/recons/I21_lh_recon/surf/lh.sphere.new.reg
- Read /space/rock/4/users/hires/recons/I21_lh_recon/mri/T1.mgz
- Surface area: 869.5 cm^2
- Applying linear transform
- ---------------------------------------------------
- #@# processing subject 8/9 I23_LH...
- Reading /space/rock/4/users/hires/recons/I23_LH/surf/lh.sphere.new.reg
- Read /space/rock/4/users/hires/recons/I23_LH/mri/T1.mgz
- Surface area: 774.1 cm^2
- Applying linear transform
- ---------------------------------------------------
- #@# processing subject 9/9 I25_lh_recon...
- Reading /space/rock/4/users/hires/recons/I25_lh_recon/surf/lh.sphere.new.reg
- Read /space/rock/4/users/hires/recons/I25_lh_recon/mri/T1.mgz
- Surface area: 446.0 cm^2
- Applying linear transform
- Finished loading all data
- Avg surf area = 737.013 cm
- Reading icosahedron from /homes/4/fischl/dev/freesurfer/lib/bem/ic7.tri...
- writing average canonical surface to /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.sphere.new.reg
- setting group surface area to be 737.0 cm^2 (scale=1.16)
- writing average white_avg surface to /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.white_avg
- writing group avg surface area 737 cm^2 into surface file
- mris_make_average_surface done
- #@# Making average lh.pial surface ---------------------
- Tue Sep 9 09:36:32 EDT 2008
- /autofs/space/rock_004/users/hires/recons/lh.EC_average
- mris_make_average_surface -i 7 -o pial -sdir-out /space/rock/4/users/hires/recons lh pial_avg sphere.new.reg lh.EC_average I7_ras_recon I9_recon I14 I15 G1 I20_lh_recon I21_lh_recon I23_LH I25_lh_recon
- reading vertex positions from pial...
- ---------------------------------------------------
- hemi = lh
- avg_surf_name = pial_avg
- canon_surf_name = sphere.new.reg
- out_sname = lh.EC_average
- xform = talairach.xfm
- ---------------------------------------------------
- ---------------------------------------------------
- #@# processing subject 1/9 I7_ras_recon...
- Reading /space/rock/4/users/hires/recons/I7_ras_recon/surf/lh.sphere.new.reg
- Read /space/rock/4/users/hires/recons/I7_ras_recon/mri/T1.mgz
- Surface area: 897.6 cm^2
- Applying linear transform
- ---------------------------------------------------
- #@# processing subject 2/9 I9_recon...
- Reading /space/rock/4/users/hires/recons/I9_recon/surf/lh.sphere.new.reg
- Read /space/rock/4/users/hires/recons/I9_recon/mri/T1
- Surface area: 783.6 cm^2
- Applying linear transform
- ---------------------------------------------------
- #@# processing subject 3/9 I14...
- Reading /space/rock/4/users/hires/recons/I14/surf/lh.sphere.new.reg
- Read /space/rock/4/users/hires/recons/I14/mri/T1
- Surface area: 722.6 cm^2
- Applying linear transform
- ---------------------------------------------------
- #@# processing subject 4/9 I15...
- Reading /space/rock/4/users/hires/recons/I15/surf/lh.sphere.new.reg
- Read /space/rock/4/users/hires/recons/I15/mri/T1.mgz
- Surface area: 668.9 cm^2
- Applying linear transform
- ---------------------------------------------------
- #@# processing subject 5/9 G1...
- Reading /space/rock/4/users/hires/recons/G1/surf/lh.sphere.new.reg
- Read /space/rock/4/users/hires/recons/G1/mri/T1.mgz
- Surface area: 735.3 cm^2
- Applying linear transform
- ---------------------------------------------------
- #@# processing subject 6/9 I20_lh_recon...
- Reading /space/rock/4/users/hires/recons/I20_lh_recon/surf/lh.sphere.new.reg
- Read /space/rock/4/users/hires/recons/I20_lh_recon/mri/T1.mgz
- Surface area: 700.3 cm^2
- Applying linear transform
- ---------------------------------------------------
- #@# processing subject 7/9 I21_lh_recon...
- Reading /space/rock/4/users/hires/recons/I21_lh_recon/surf/lh.sphere.new.reg
- Read /space/rock/4/users/hires/recons/I21_lh_recon/mri/T1.mgz
- Surface area: 869.5 cm^2
- Applying linear transform
- ---------------------------------------------------
- #@# processing subject 8/9 I23_LH...
- Reading /space/rock/4/users/hires/recons/I23_LH/surf/lh.sphere.new.reg
- Read /space/rock/4/users/hires/recons/I23_LH/mri/T1.mgz
- Surface area: 774.1 cm^2
- Applying linear transform
- ---------------------------------------------------
- #@# processing subject 9/9 I25_lh_recon...
- Reading /space/rock/4/users/hires/recons/I25_lh_recon/surf/lh.sphere.new.reg
- Read /space/rock/4/users/hires/recons/I25_lh_recon/mri/T1.mgz
- Surface area: 433.6 cm^2
- Applying linear transform
- Finished loading all data
- Avg surf area = 731.7 cm
- Reading icosahedron from /homes/4/fischl/dev/freesurfer/lib/bem/ic7.tri...
- writing average canonical surface to /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.sphere.new.reg
- setting group surface area to be 731.7 cm^2 (scale=1.16)
- writing average pial_avg surface to /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.pial_avg
- writing group avg surface area 732 cm^2 into surface file
- mris_make_average_surface done
- #@# Making average lh.inflated surface ---------------------
- Tue Sep 9 09:38:37 EDT 2008
- /autofs/space/rock_004/users/hires/recons/lh.EC_average
- mris_make_average_surface -i 7 -o inflated -sdir-out /space/rock/4/users/hires/recons lh inflated_avg sphere.new.reg lh.EC_average I7_ras_recon I9_recon I14 I15 G1 I20_lh_recon I21_lh_recon I23_LH I25_lh_recon
- reading vertex positions from inflated...
- ---------------------------------------------------
- hemi = lh
- avg_surf_name = inflated_avg
- canon_surf_name = sphere.new.reg
- out_sname = lh.EC_average
- xform = talairach.xfm
- ---------------------------------------------------
- ---------------------------------------------------
- #@# processing subject 1/9 I7_ras_recon...
- Reading /space/rock/4/users/hires/recons/I7_ras_recon/surf/lh.sphere.new.reg
- Read /space/rock/4/users/hires/recons/I7_ras_recon/mri/T1.mgz
- Surface area: 580.0 cm^2
- Applying linear transform
- ---------------------------------------------------
- #@# processing subject 2/9 I9_recon...
- Reading /space/rock/4/users/hires/recons/I9_recon/surf/lh.sphere.new.reg
- Read /space/rock/4/users/hires/recons/I9_recon/mri/T1
- Surface area: 653.2 cm^2
- Applying linear transform
- ---------------------------------------------------
- #@# processing subject 3/9 I14...
- Reading /space/rock/4/users/hires/recons/I14/surf/lh.sphere.new.reg
- Read /space/rock/4/users/hires/recons/I14/mri/T1
- Surface area: 612.2 cm^2
- Applying linear transform
- ---------------------------------------------------
- #@# processing subject 4/9 I15...
- Reading /space/rock/4/users/hires/recons/I15/surf/lh.sphere.new.reg
- Read /space/rock/4/users/hires/recons/I15/mri/T1.mgz
- Surface area: 564.3 cm^2
- Applying linear transform
- ---------------------------------------------------
- #@# processing subject 5/9 G1...
- Reading /space/rock/4/users/hires/recons/G1/surf/lh.sphere.new.reg
- Read /space/rock/4/users/hires/recons/G1/mri/T1.mgz
- Surface area: 722.2 cm^2
- Applying linear transform
- ---------------------------------------------------
- #@# processing subject 6/9 I20_lh_recon...
- Reading /space/rock/4/users/hires/recons/I20_lh_recon/surf/lh.sphere.new.reg
- Read /space/rock/4/users/hires/recons/I20_lh_recon/mri/T1.mgz
- Surface area: 630.5 cm^2
- Applying linear transform
- ---------------------------------------------------
- #@# processing subject 7/9 I21_lh_recon...
- Reading /space/rock/4/users/hires/recons/I21_lh_recon/surf/lh.sphere.new.reg
- Read /space/rock/4/users/hires/recons/I21_lh_recon/mri/T1.mgz
- Surface area: 783.4 cm^2
- Applying linear transform
- ---------------------------------------------------
- #@# processing subject 8/9 I23_LH...
- Reading /space/rock/4/users/hires/recons/I23_LH/surf/lh.sphere.new.reg
- Read /space/rock/4/users/hires/recons/I23_LH/mri/T1.mgz
- Surface area: 724.2 cm^2
- Applying linear transform
- ---------------------------------------------------
- #@# processing subject 9/9 I25_lh_recon...
- Reading /space/rock/4/users/hires/recons/I25_lh_recon/surf/lh.sphere.new.reg
- Read /space/rock/4/users/hires/recons/I25_lh_recon/mri/T1.mgz
- Surface area: 760.6 cm^2
- Applying linear transform
- Finished loading all data
- Avg surf area = 670.058 cm
- Reading icosahedron from /homes/4/fischl/dev/freesurfer/lib/bem/ic7.tri...
- writing average canonical surface to /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.sphere.new.reg
- setting group surface area to be 670.1 cm^2 (scale=0.95)
- writing average inflated_avg surface to /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.inflated_avg
- writing group avg surface area 670 cm^2 into surface file
- mris_make_average_surface done
- ---------------------------------------------------
- #@# Making average lh.sulc ----------------------
- /autofs/space/rock_004/users/hires/recons/lh.EC_average
- mris_average_curvature -o lh.EC_average sulc lh sphere.new.reg I7_ras_recon I9_recon I14 I15 G1 I20_lh_recon I21_lh_recon I23_LH I25_lh_recon /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.avg_sulc
- painting output onto subject lh.EC_average.
- processing subject I7_ras_recon...
- processing subject I9_recon...
- processing subject I14...
- processing subject I15...
- processing subject G1...
- processing subject I20_lh_recon...
- processing subject I21_lh_recon...
- processing subject I23_LH...
- processing subject I25_lh_recon...
- reading output surface /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.sphere.new.reg...
- writing blurred pattern to surface to /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.avg_sulc
- writing curvature file /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.avg_sulc
- #@# Making average lh.curv ----------------------
- /autofs/space/rock_004/users/hires/recons/lh.EC_average
- mris_average_curvature -o lh.EC_average curv lh sphere.new.reg I7_ras_recon I9_recon I14 I15 G1 I20_lh_recon I21_lh_recon I23_LH I25_lh_recon /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.avg_curv
- painting output onto subject lh.EC_average.
- processing subject I7_ras_recon...
- processing subject I9_recon...
- processing subject I14...
- processing subject I15...
- processing subject G1...
- processing subject I20_lh_recon...
- processing subject I21_lh_recon...
- processing subject I23_LH...
- processing subject I25_lh_recon...
- reading output surface /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.sphere.new.reg...
- writing blurred pattern to surface to /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.avg_curv
- writing curvature file /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.avg_curv
- #@# Making average lh.thickness ----------------------
- /autofs/space/rock_004/users/hires/recons/lh.EC_average
- mris_average_curvature -o lh.EC_average thickness lh sphere.new.reg I7_ras_recon I9_recon I14 I15 G1 I20_lh_recon I21_lh_recon I23_LH I25_lh_recon /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.avg_thickness
- painting output onto subject lh.EC_average.
- processing subject I7_ras_recon...
- processing subject I9_recon...
- processing subject I14...
- processing subject I15...
- processing subject G1...
- processing subject I20_lh_recon...
- processing subject I21_lh_recon...
- processing subject I23_LH...
- processing subject I25_lh_recon...
- reading output surface /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.sphere.new.reg...
- writing blurred pattern to surface to /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.avg_thickness
- writing curvature file /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.avg_thickness
- ---------------------------------------------------
- #@# Smoothing, inflating, etc lh ----------------
- /autofs/space/rock_004/users/hires/recons/lh.EC_average/surf
- mris_smooth
- smoothing for 5 iterations
- reading group avg surface area 737 cm^2 from file
- smoothing surface tessellation for 5 iterations...
- smoothing complete - recomputing first and second fundamental forms...
- writing smoothed curvature to ./lh.curv
- writing curvature file ./lh.curv
- writing smoothed area to ./lh.area
- writing curvature file ./lh.area
- writing smoothed surface to ./lh.smoothwm
- writing group avg surface area 737 cm^2 into surface file
- mris_inflate
- reading group avg surface area 737 cm^2 from file
- avg radius = 44.1 mm, total surface area = 52155 mm^2
- tol=1.0e-04, sigma=0.0, host=jupit, nav=16, nbrs=2, l_spring_norm=1.000, l_dist=0.100
- mom=0.90, dt=0.90
- desired rms height=0.015
- writing inflated surface to ./lh.inflated
- writing sulcal depths to ./lh.sulc
- 000: dt: 0.0000, rms height=0.049, avgs=16
- 005: dt: 0.9000, rms height=0.040, avgs=16, l_dist=0.40
- 010: dt: 0.9000, rms height=0.032, avgs=16, l_dist=0.40
- 015: dt: 0.9000, rms height=0.027, avgs=8, l_dist=0.28
- 020: dt: 0.9000, rms height=0.023, avgs=8, l_dist=0.28
- 025: dt: 0.9000, rms height=0.019, avgs=4, l_dist=0.20
- 030: dt: 0.9000, rms height=0.017, avgs=4, l_dist=0.20
- 035: dt: 0.9000, rms height=0.015, avgs=2, l_dist=0.14
- inflation complete.
- writing group avg surface area 737 cm^2 into surface file
- writing curvature file ./lh.sulc
- inflation took 2.4 minutes
- mris_curvature
- averaging curvature patterns 10 times.
- reading group avg surface area 737 cm^2 from file
- total integrated curvature = 40.384*4pi (507.479) --> -39 handles
- ICI = 151.0, FI = 1533.4, variation=23665.182
- writing Gaussian curvature to ./lh.white_avg.K...writing curvature file ./lh.white_avg.K
- done.
- writing mean curvature to ./lh.white_avg.H...writing curvature file ./lh.white_avg.H
- done.
- mri_annotation2label --subject lh.EC_average --hemi lh --outdir /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487 --annotation aparc.a2005s
- reading group avg surface area 737 cm^2 from file
- reading colortable from annotation file...
- colortable with 82 entries read (originally /autofs/space/birn_044/users/christophe_atlas_rebuild/Simple_surface_labels2005.txt)
- subject = lh.EC_average
- annotation = aparc.a2005s
- hemi = lh
- outdir = (null)
- surface = white
- Reading surface
- /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.white
- Loading annotations from /space/rock/4/users/hires/recons/lh.EC_average/label/lh.aparc.a2005s.annot
- max index = 81
- 3 395 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_cingulate-Isthmus.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_cingulate-Isthmus.label
- 4 2861 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_cingulate-Main_part.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_cingulate-Main_part.label
- 5 1479 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_cuneus.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_cuneus.label
- 6 1838 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_frontal_inf-Opercular_part.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_frontal_inf-Opercular_part.label
- 7 462 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_frontal_inf-Orbital_part.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_frontal_inf-Orbital_part.label
- 8 1048 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_frontal_inf-Triangular_part.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_frontal_inf-Triangular_part.label
- 9 3827 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_frontal_middle.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_frontal_middle.label
- 10 8507 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_frontal_superior.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_frontal_superior.label
- 11 342 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_frontomarginal.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_frontomarginal.label
- 12 569 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_insular_long.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_insular_long.label
- 13 949 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_insular_short.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_insular_short.label
- 14 1373 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_and_S_occipital_inferior.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_and_S_occipital_inferior.label
- 15 2060 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_occipital_middle.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_occipital_middle.label
- 16 1316 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_occipital_superior.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_occipital_superior.label
- 17 1745 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_occipit-temp_lat-Or_fusiform.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_occipit-temp_lat-Or_fusiform.label
- 18 2469 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_occipit-temp_med-Lingual_part.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_occipit-temp_med-Lingual_part.label
- 19 2288 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_occipit-temp_med-Parahippocampal_part.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_occipit-temp_med-Parahippocampal_part.label
- 20 2488 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_orbital.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_orbital.label
- 21 2208 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_paracentral.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_paracentral.label
- 22 2982 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_parietal_inferior-Angular_part.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_parietal_inferior-Angular_part.label
- 23 4614 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_parietal_inferior-Supramarginal_part.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_parietal_inferior-Supramarginal_part.label
- 24 4105 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_parietal_superior.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_parietal_superior.label
- 25 3571 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_postcentral.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_postcentral.label
- 26 3992 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_precentral.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_precentral.label
- 27 3558 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_precuneus.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_precuneus.label
- 28 1106 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_rectus.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_rectus.label
- 29 266 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_subcallosal.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_subcallosal.label
- 30 1746 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_subcentral.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_subcentral.label
- 31 2543 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_temporal_inferior.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_temporal_inferior.label
- 32 2823 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_temporal_middle.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_temporal_middle.label
- 33 749 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_temp_sup-G_temp_transv_and_interm_S.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_temp_sup-G_temp_transv_and_interm_S.label
- 34 2656 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_temp_sup-Lateral_aspect.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_temp_sup-Lateral_aspect.label
- 35 877 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_temp_sup-Planum_polare.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_temp_sup-Planum_polare.label
- 36 1351 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_temp_sup-Planum_tempolare.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_temp_sup-Planum_tempolare.label
- 37 730 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_and_S_transverse_frontopolar.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_and_S_transverse_frontopolar.label
- 38 410 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.Lat_Fissure-ant_sgt-ramus_horizontal.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.Lat_Fissure-ant_sgt-ramus_horizontal.label
- 39 413 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.Lat_Fissure-ant_sgt-ramus_vertical.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.Lat_Fissure-ant_sgt-ramus_vertical.label
- 40 2050 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.Lat_Fissure-post_sgt.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.Lat_Fissure-post_sgt.label
- 41 13887 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.Medial_wall.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.Medial_wall.label
- 42 1795 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.Pole_occipital.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.Pole_occipital.label
- 43 1674 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.Pole_temporal.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.Pole_temporal.label
- 44 3122 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_calcarine.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_calcarine.label
- 45 4802 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_central.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_central.label
- 46 235 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_central_insula.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_central_insula.label
- 47 5552 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_cingulate-Main_part_and_Intracingulate.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_cingulate-Main_part_and_Intracingulate.label
- 48 1553 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_cingulate-Marginalis_part.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_cingulate-Marginalis_part.label
- 49 843 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_circular_insula_anterior.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_circular_insula_anterior.label
- 50 2214 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_circular_insula_inferior.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_circular_insula_inferior.label
- 51 3081 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_circular_insula_superior.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_circular_insula_superior.label
- 52 975 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_collateral_transverse_ant.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_collateral_transverse_ant.label
- 53 339 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_collateral_transverse_post.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_collateral_transverse_post.label
- 54 2266 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_frontal_inferior.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_frontal_inferior.label
- 55 1421 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_frontal_middle.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_frontal_middle.label
- 56 3034 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_frontal_superior.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_frontal_superior.label
- 57 551 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_frontomarginal.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_frontomarginal.label
- 58 495 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_intermedius_primus-Jensen.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_intermedius_primus-Jensen.label
- 59 4390 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_intraparietal-and_Parietal_transverse.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_intraparietal-and_Parietal_transverse.label
- 60 857 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_occipital_anterior.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_occipital_anterior.label
- 61 1003 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_occipital_middle_and_Lunatus.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_occipital_middle_and_Lunatus.label
- 62 1325 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_occipital_superior_and_transversalis.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_occipital_superior_and_transversalis.label
- 63 946 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_occipito-temporal_lateral.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_occipito-temporal_lateral.label
- 64 2543 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_occipito-temporal_medial_and_S_Lingual.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_occipito-temporal_medial_and_S_Lingual.label
- 65 1215 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_orbital-H_shapped.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_orbital-H_shapped.label
- 66 325 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_orbital_lateral.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_orbital_lateral.label
- 67 806 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_orbital_medial-Or_olfactory.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_orbital_medial-Or_olfactory.label
- 68 293 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_paracentral.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_paracentral.label
- 69 2208 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_parieto_occipital.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_parieto_occipital.label
- 70 2269 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_pericallosal.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_pericallosal.label
- 71 4420 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_postcentral.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_postcentral.label
- 72 1938 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_precentral-Inferior-part.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_precentral-Inferior-part.label
- 73 1902 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_precentral-Superior-part.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_precentral-Superior-part.label
- 74 71 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_subcentral_ant.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_subcentral_ant.label
- 75 263 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_subcentral_post.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_subcentral_post.label
- 76 493 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_suborbital.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_suborbital.label
- 77 1446 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_subparietal.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_subparietal.label
- 79 1304 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_temporal_inferior.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_temporal_inferior.label
- 80 6746 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_temporal_superior.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_temporal_superior.label
- 81 474 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_temporal_transverse.label
- LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_temporal_transverse.label
- mri_mergelabels -o /space/rock/4/users/hires/recons/lh.EC_average/label/lh.cortex.label -d /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487
- Done
- #@# Making rh registration template ---------
- /autofs/space/rock_004/users/hires/recons/lh.EC_average
- mris_make_template -norot -annot aparc rh sphere.new.reg I7_ras_recon I9_recon I14 I15 G1 I20_lh_recon I21_lh_recon I23_LH I25_lh_recon rh.reg.template.tif
- not aligning hemispheres before averaging.
- zeroing medial wall in aparc
- creating new parameterization...
- processing subject I7_ras_recon (1 of 9)
- reading spherical surface /space/rock/4/users/hires/recons/I7_ras_recon/surf/rh.sphere.new.reg...
- MRISread(/space/rock/4/users/hires/recons/I7_ras_recon/surf/rh.sphere.new.reg): could not open file
- No such file or directory
- mris_make_template: could not read surface file /space/rock/4/users/hires/recons/I7_ras_recon/surf/rh.sphere.new.reg
- No such file or directory
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