ds114_test1_freesurfer/lh.EC_average/scripts/make_average_surface.log

$Id: make_average_surface,v 1.45 2008/02/21 20:39:49 greve Exp $
Tue Sep  9 09:30:06 EDT 2008
/autofs/space/rock_004/users/hires/recons/scripts
setenv SUBJECTS_DIR /space/rock/4/users/hires/recons
output ddir is /space/rock/4/users/hires/recons
uid=5499(fischl) gid=5499(fischl) groups=160(fsdev),1005(cma),1013(p41),1021(stroke),1031(daragp),1046(recon),1048(seq),1050(blackrgp),1055(cagn),1071(birn),1085(reconx),1098(retinopy),1102(ellengp),1446(nandgp),1467(cardstr),3048(acqp41),5499(fischl)
====================
make_average_surface
====================
Tue Sep  9 09:30:06 EDT 2008
/autofs/space/rock_004/users/hires/recons/scripts
/homes/4/fischl/dev/freesurfer/bin/make_average_surface
--subjects I7_ras_recon I9_recon I14 I15 G1 I20_lh_recon I21_lh_recon I23_LH I25_lh_recon --out lh.EC_average --sdir /space/rock/4/users/hires/recons --surf-reg sphere.new.reg
input subjects: I7_ras_recon I9_recon I14 I15 G1 I20_lh_recon I21_lh_recon I23_LH I25_lh_recon
output subject: lh.EC_average
mri_add_xform_to_header -c auto /space/rock/4/users/hires/recons/lh.EC_average/mri/mni305.cor.mgz /space/rock/4/users/hires/recons/lh.EC_average/mri/mni305.cor.mgz
INFO: extension is mgz


#@# Making lh registration template ---------
/autofs/space/rock_004/users/hires/recons/lh.EC_average
mris_make_template -norot -annot aparc lh sphere.new.reg I7_ras_recon I9_recon I14 I15 G1 I20_lh_recon I21_lh_recon I23_LH I25_lh_recon lh.reg.template.tif
not aligning hemispheres before averaging.
zeroing medial wall in aparc
creating new parameterization...

processing subject I7_ras_recon (1 of 9)
reading spherical surface /space/rock/4/users/hires/recons/I7_ras_recon/surf/lh.sphere.new.reg...
reading colortable from annotation file...
colortable with 35 entries read (originally /autofs/space/birn_044/users/buckner_surf_atlas_rebuild/scripts/colortable_final.txt)
ripping medial wall...
computing parameterization for surface /space/rock/4/users/hires/recons/I7_ras_recon/surf/lh.inflated.H...
curvature mean = -0.118, std = 0.848
computing parameterization for surface /space/rock/4/users/hires/recons/I7_ras_recon/surf/lh.sulc...
computing parameterization for surface /space/rock/4/users/hires/recons/I7_ras_recon/surf/lh.smoothwm...

processing subject I9_recon (2 of 9)
reading spherical surface /space/rock/4/users/hires/recons/I9_recon/surf/lh.sphere.new.reg...
reading colortable from annotation file...
colortable with 35 entries read (originally /autofs/space/birn_044/users/buckner_surf_atlas_rebuild/scripts/colortable_final.txt)
curvature mean = -0.022, std = 0.551
curvature mean = -0.140, std = 1.929
ripping medial wall...
computing parameterization for surface /space/rock/4/users/hires/recons/I9_recon/surf/lh.inflated.H...
curvature mean = -0.083, std = 0.936
computing parameterization for surface /space/rock/4/users/hires/recons/I9_recon/surf/lh.sulc...
computing parameterization for surface /space/rock/4/users/hires/recons/I9_recon/surf/lh.smoothwm...

processing subject I14 (3 of 9)
reading spherical surface /space/rock/4/users/hires/recons/I14/surf/lh.sphere.new.reg...
reading colortable from annotation file...
colortable with 35 entries read (originally /autofs/space/birn_044/users/buckner_surf_atlas_rebuild/scripts/colortable_final.txt)
curvature mean = -0.014, std = 0.562
curvature mean = -0.158, std = 2.640
ripping medial wall...
computing parameterization for surface /space/rock/4/users/hires/recons/I14/surf/lh.inflated.H...
curvature mean = -0.092, std = 0.906
computing parameterization for surface /space/rock/4/users/hires/recons/I14/surf/lh.sulc...
computing parameterization for surface /space/rock/4/users/hires/recons/I14/surf/lh.smoothwm...

processing subject I15 (4 of 9)
reading spherical surface /space/rock/4/users/hires/recons/I15/surf/lh.sphere.new.reg...
reading colortable from annotation file...
colortable with 35 entries read (originally /autofs/space/birn_044/users/buckner_surf_atlas_rebuild/scripts/colortable_final.txt)
curvature mean = -0.016, std = 0.541
curvature mean = -0.158, std = 2.105
ripping medial wall...
computing parameterization for surface /space/rock/4/users/hires/recons/I15/surf/lh.inflated.H...
curvature mean = -0.096, std = 0.884
computing parameterization for surface /space/rock/4/users/hires/recons/I15/surf/lh.sulc...
computing parameterization for surface /space/rock/4/users/hires/recons/I15/surf/lh.smoothwm...

processing subject G1 (5 of 9)
reading spherical surface /space/rock/4/users/hires/recons/G1/surf/lh.sphere.new.reg...
reading colortable from annotation file...
colortable with 35 entries read (originally /autofs/space/birn_044/users/buckner_surf_atlas_rebuild/scripts/colortable_final.txt)
curvature mean = -0.019, std = 0.560
curvature mean = -0.151, std = 2.822
ripping medial wall...
computing parameterization for surface /space/rock/4/users/hires/recons/G1/surf/lh.inflated.H...
curvature mean = -0.091, std = 0.919
computing parameterization for surface /space/rock/4/users/hires/recons/G1/surf/lh.sulc...
computing parameterization for surface /space/rock/4/users/hires/recons/G1/surf/lh.smoothwm...

processing subject I20_lh_recon (6 of 9)
reading spherical surface /space/rock/4/users/hires/recons/I20_lh_recon/surf/lh.sphere.new.reg...
reading colortable from annotation file...
colortable with 35 entries read (originally /autofs/space/birn_044/users/buckner_surf_atlas_rebuild/scripts/colortable_final.txt)
curvature mean = -0.016, std = 0.520
curvature mean = -0.106, std = 7.065
ripping medial wall...
computing parameterization for surface /space/rock/4/users/hires/recons/I20_lh_recon/surf/lh.inflated.H...
curvature mean = -0.092, std = 0.883
computing parameterization for surface /space/rock/4/users/hires/recons/I20_lh_recon/surf/lh.sulc...
computing parameterization for surface /space/rock/4/users/hires/recons/I20_lh_recon/surf/lh.smoothwm...

processing subject I21_lh_recon (7 of 9)
reading spherical surface /space/rock/4/users/hires/recons/I21_lh_recon/surf/lh.sphere.new.reg...
reading colortable from annotation file...
colortable with 35 entries read (originally /autofs/space/birn_044/users/buckner_surf_atlas_rebuild/scripts/colortable_final.txt)
curvature mean = -0.018, std = 0.543
curvature mean = -0.166, std = 3.183
ripping medial wall...
computing parameterization for surface /space/rock/4/users/hires/recons/I21_lh_recon/surf/lh.inflated.H...
curvature mean = -0.070, std = 0.918
computing parameterization for surface /space/rock/4/users/hires/recons/I21_lh_recon/surf/lh.sulc...
computing parameterization for surface /space/rock/4/users/hires/recons/I21_lh_recon/surf/lh.smoothwm...

processing subject I23_LH (8 of 9)
reading spherical surface /space/rock/4/users/hires/recons/I23_LH/surf/lh.sphere.new.reg...
reading colortable from annotation file...
colortable with 35 entries read (originally /autofs/space/birn_044/users/buckner_surf_atlas_rebuild/scripts/colortable_final.txt)
curvature mean = -0.010, std = 0.571
curvature mean = -0.026, std = 7.618
ripping medial wall...
computing parameterization for surface /space/rock/4/users/hires/recons/I23_LH/surf/lh.inflated.H...
curvature mean = 0.004, std = 0.912
computing parameterization for surface /space/rock/4/users/hires/recons/I23_LH/surf/lh.sulc...
computing parameterization for surface /space/rock/4/users/hires/recons/I23_LH/surf/lh.smoothwm...

processing subject I25_lh_recon (9 of 9)
reading spherical surface /space/rock/4/users/hires/recons/I25_lh_recon/surf/lh.sphere.new.reg...
reading colortable from annotation file...
colortable with 35 entries read (originally /space/amaebi/26/users/buckner_cortical_atlas/scripts/colortable_final.txt)
curvature mean = 0.014, std = 0.560
curvature mean = -0.153, std = 3.106
ripping medial wall...
computing parameterization for surface /space/rock/4/users/hires/recons/I25_lh_recon/surf/lh.inflated.H...
curvature mean = -0.063, std = 0.966
computing parameterization for surface /space/rock/4/users/hires/recons/I25_lh_recon/surf/lh.sulc...
computing parameterization for surface /space/rock/4/users/hires/recons/I25_lh_recon/surf/lh.smoothwm...
writing updated template with 9 subjects to lh.reg.template.tif...
curvature mean = -0.009, std = 0.556
curvature mean = -0.087, std = 1.254
#@# Making lh annotation ---------------------
Tue Sep  9 09:32:11 EDT 2008
mris_ca_label -ml-annot lh.curvature.buckner40.filled.desikan_killiany.2007-06-20.gcs 7 label/lh.aparc.annot
/autofs/space/rock_004/users/hires/recons/lh.EC_average
ML Label: lh.curvature.buckner40.filled.desikan_killiany.2007-06-20.gcs 7 label/lh.aparc.annot
   Reading icosahedron /homes/4/fischl/dev/freesurfer/lib/bem/ic7.tri
Reading gcsa from /homes/4/fischl/dev/freesurfer/average/lh.curvature.buckner40.filled.desikan_killiany.2007-06-20.gcs
reading color table from GCSA file....
average std = 2.1   using min determinant for regularization = 0.044
0 singular and 372 ill-conditioned covariance matrices regularized
Building most likely labels
Filtering labels
2 filter iterations complete (2 requested, 378 changed)
writing colortable into annotation file...
mris_ca_label -ml-annot lh.atlas2005_simple.gcs 7 label/lh.aparc.a2005s.annot
/autofs/space/rock_004/users/hires/recons/lh.EC_average
ML Label: lh.atlas2005_simple.gcs 7 label/lh.aparc.a2005s.annot
   Reading icosahedron /homes/4/fischl/dev/freesurfer/lib/bem/ic7.tri
Reading gcsa from /homes/4/fischl/dev/freesurfer/average/lh.atlas2005_simple.gcs
reading color table from GCSA file....
average std = 4.5 0.2   using min determinant for regularization = 0.000
0 singular and 1215 ill-conditioned covariance matrices regularized
Building most likely labels
Filtering labels
2 filter iterations complete (2 requested, 1804 changed)
writing colortable into annotation file...
#@# Making average lh.orig surface ---------------------
Tue Sep  9 09:32:33 EDT 2008
/autofs/space/rock_004/users/hires/recons/lh.EC_average
mris_make_average_surface -i 7 -o orig -sdir-out /space/rock/4/users/hires/recons lh orig_avg sphere.new.reg lh.EC_average I7_ras_recon I9_recon I14 I15 G1 I20_lh_recon I21_lh_recon I23_LH I25_lh_recon
reading vertex positions from orig...
---------------------------------------------------
hemi            = lh
avg_surf_name   = orig_avg
canon_surf_name = sphere.new.reg
out_sname       = lh.EC_average
xform           = talairach.xfm
---------------------------------------------------



---------------------------------------------------
#@# processing subject 1/9 I7_ras_recon...
  Reading /space/rock/4/users/hires/recons/I7_ras_recon/surf/lh.sphere.new.reg
  Read /space/rock/4/users/hires/recons/I7_ras_recon/mri/T1.mgz
  Surface area: 728.2 cm^2
  Applying linear transform

---------------------------------------------------
#@# processing subject 2/9 I9_recon...
  Reading /space/rock/4/users/hires/recons/I9_recon/surf/lh.sphere.new.reg
  Read /space/rock/4/users/hires/recons/I9_recon/mri/T1
  Surface area: 812.7 cm^2
  Applying linear transform

---------------------------------------------------
#@# processing subject 3/9 I14...
  Reading /space/rock/4/users/hires/recons/I14/surf/lh.sphere.new.reg
  Read /space/rock/4/users/hires/recons/I14/mri/T1
  Surface area: 759.9 cm^2
  Applying linear transform

---------------------------------------------------
#@# processing subject 4/9 I15...
  Reading /space/rock/4/users/hires/recons/I15/surf/lh.sphere.new.reg
  Read /space/rock/4/users/hires/recons/I15/mri/T1.mgz
  Surface area: 706.8 cm^2
  Applying linear transform

---------------------------------------------------
#@# processing subject 5/9 G1...
  Reading /space/rock/4/users/hires/recons/G1/surf/lh.sphere.new.reg
  Read /space/rock/4/users/hires/recons/G1/mri/T1.mgz
  Surface area: 914.5 cm^2
  Applying linear transform

---------------------------------------------------
#@# processing subject 6/9 I20_lh_recon...
  Reading /space/rock/4/users/hires/recons/I20_lh_recon/surf/lh.sphere.new.reg
  Read /space/rock/4/users/hires/recons/I20_lh_recon/mri/T1.mgz
  Surface area: 794.3 cm^2
  Applying linear transform

---------------------------------------------------
#@# processing subject 7/9 I21_lh_recon...
  Reading /space/rock/4/users/hires/recons/I21_lh_recon/surf/lh.sphere.new.reg
  Read /space/rock/4/users/hires/recons/I21_lh_recon/mri/T1.mgz
  Surface area: 1008.5 cm^2
  Applying linear transform

---------------------------------------------------
#@# processing subject 8/9 I23_LH...
  Reading /space/rock/4/users/hires/recons/I23_LH/surf/lh.sphere.new.reg
  Read /space/rock/4/users/hires/recons/I23_LH/mri/T1.mgz
  Surface area: 913.3 cm^2
  Applying linear transform

---------------------------------------------------
#@# processing subject 9/9 I25_lh_recon...
  Reading /space/rock/4/users/hires/recons/I25_lh_recon/surf/lh.sphere.new.reg
  Read /space/rock/4/users/hires/recons/I25_lh_recon/mri/T1.mgz
  Surface area: 942.6 cm^2
  Applying linear transform
Finished loading all data
Avg surf area = 842.308 cm
Reading icosahedron from /homes/4/fischl/dev/freesurfer/lib/bem/ic7.tri...
writing average canonical surface to /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.sphere.new.reg
setting group surface area to be 842.3 cm^2 (scale=1.20)
writing average orig_avg surface to /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.orig_avg
writing group avg surface area 842 cm^2 into surface file
mris_make_average_surface done


#@# Making average lh.white surface ---------------------
Tue Sep  9 09:34:31 EDT 2008
/autofs/space/rock_004/users/hires/recons/lh.EC_average
mris_make_average_surface -i 7 -o white -sdir-out /space/rock/4/users/hires/recons lh white_avg sphere.new.reg lh.EC_average I7_ras_recon I9_recon I14 I15 G1 I20_lh_recon I21_lh_recon I23_LH I25_lh_recon
reading vertex positions from white...
---------------------------------------------------
hemi            = lh
avg_surf_name   = white_avg
canon_surf_name = sphere.new.reg
out_sname       = lh.EC_average
xform           = talairach.xfm
---------------------------------------------------



---------------------------------------------------
#@# processing subject 1/9 I7_ras_recon...
  Reading /space/rock/4/users/hires/recons/I7_ras_recon/surf/lh.sphere.new.reg
  Read /space/rock/4/users/hires/recons/I7_ras_recon/mri/T1.mgz
  Surface area: 678.5 cm^2
  Applying linear transform

---------------------------------------------------
#@# processing subject 2/9 I9_recon...
  Reading /space/rock/4/users/hires/recons/I9_recon/surf/lh.sphere.new.reg
  Read /space/rock/4/users/hires/recons/I9_recon/mri/T1
  Surface area: 783.6 cm^2
  Applying linear transform

---------------------------------------------------
#@# processing subject 3/9 I14...
  Reading /space/rock/4/users/hires/recons/I14/surf/lh.sphere.new.reg
  Read /space/rock/4/users/hires/recons/I14/mri/T1
  Surface area: 759.9 cm^2
  Applying linear transform

---------------------------------------------------
#@# processing subject 4/9 I15...
  Reading /space/rock/4/users/hires/recons/I15/surf/lh.sphere.new.reg
  Read /space/rock/4/users/hires/recons/I15/mri/T1.mgz
  Surface area: 706.8 cm^2
  Applying linear transform

---------------------------------------------------
#@# processing subject 5/9 G1...
  Reading /space/rock/4/users/hires/recons/G1/surf/lh.sphere.new.reg
  Read /space/rock/4/users/hires/recons/G1/mri/T1.mgz
  Surface area: 914.5 cm^2
  Applying linear transform

---------------------------------------------------
#@# processing subject 6/9 I20_lh_recon...
  Reading /space/rock/4/users/hires/recons/I20_lh_recon/surf/lh.sphere.new.reg
  Read /space/rock/4/users/hires/recons/I20_lh_recon/mri/T1.mgz
  Surface area: 700.3 cm^2
  Applying linear transform

---------------------------------------------------
#@# processing subject 7/9 I21_lh_recon...
  Reading /space/rock/4/users/hires/recons/I21_lh_recon/surf/lh.sphere.new.reg
  Read /space/rock/4/users/hires/recons/I21_lh_recon/mri/T1.mgz
  Surface area: 869.5 cm^2
  Applying linear transform

---------------------------------------------------
#@# processing subject 8/9 I23_LH...
  Reading /space/rock/4/users/hires/recons/I23_LH/surf/lh.sphere.new.reg
  Read /space/rock/4/users/hires/recons/I23_LH/mri/T1.mgz
  Surface area: 774.1 cm^2
  Applying linear transform

---------------------------------------------------
#@# processing subject 9/9 I25_lh_recon...
  Reading /space/rock/4/users/hires/recons/I25_lh_recon/surf/lh.sphere.new.reg
  Read /space/rock/4/users/hires/recons/I25_lh_recon/mri/T1.mgz
  Surface area: 446.0 cm^2
  Applying linear transform
Finished loading all data
Avg surf area = 737.013 cm
Reading icosahedron from /homes/4/fischl/dev/freesurfer/lib/bem/ic7.tri...
writing average canonical surface to /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.sphere.new.reg
setting group surface area to be 737.0 cm^2 (scale=1.16)
writing average white_avg surface to /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.white_avg
writing group avg surface area 737 cm^2 into surface file
mris_make_average_surface done


#@# Making average lh.pial surface ---------------------
Tue Sep  9 09:36:32 EDT 2008
/autofs/space/rock_004/users/hires/recons/lh.EC_average
mris_make_average_surface -i 7 -o pial -sdir-out /space/rock/4/users/hires/recons lh pial_avg sphere.new.reg lh.EC_average I7_ras_recon I9_recon I14 I15 G1 I20_lh_recon I21_lh_recon I23_LH I25_lh_recon
reading vertex positions from pial...
---------------------------------------------------
hemi            = lh
avg_surf_name   = pial_avg
canon_surf_name = sphere.new.reg
out_sname       = lh.EC_average
xform           = talairach.xfm
---------------------------------------------------



---------------------------------------------------
#@# processing subject 1/9 I7_ras_recon...
  Reading /space/rock/4/users/hires/recons/I7_ras_recon/surf/lh.sphere.new.reg
  Read /space/rock/4/users/hires/recons/I7_ras_recon/mri/T1.mgz
  Surface area: 897.6 cm^2
  Applying linear transform

---------------------------------------------------
#@# processing subject 2/9 I9_recon...
  Reading /space/rock/4/users/hires/recons/I9_recon/surf/lh.sphere.new.reg
  Read /space/rock/4/users/hires/recons/I9_recon/mri/T1
  Surface area: 783.6 cm^2
  Applying linear transform

---------------------------------------------------
#@# processing subject 3/9 I14...
  Reading /space/rock/4/users/hires/recons/I14/surf/lh.sphere.new.reg
  Read /space/rock/4/users/hires/recons/I14/mri/T1
  Surface area: 722.6 cm^2
  Applying linear transform

---------------------------------------------------
#@# processing subject 4/9 I15...
  Reading /space/rock/4/users/hires/recons/I15/surf/lh.sphere.new.reg
  Read /space/rock/4/users/hires/recons/I15/mri/T1.mgz
  Surface area: 668.9 cm^2
  Applying linear transform

---------------------------------------------------
#@# processing subject 5/9 G1...
  Reading /space/rock/4/users/hires/recons/G1/surf/lh.sphere.new.reg
  Read /space/rock/4/users/hires/recons/G1/mri/T1.mgz
  Surface area: 735.3 cm^2
  Applying linear transform

---------------------------------------------------
#@# processing subject 6/9 I20_lh_recon...
  Reading /space/rock/4/users/hires/recons/I20_lh_recon/surf/lh.sphere.new.reg
  Read /space/rock/4/users/hires/recons/I20_lh_recon/mri/T1.mgz
  Surface area: 700.3 cm^2
  Applying linear transform

---------------------------------------------------
#@# processing subject 7/9 I21_lh_recon...
  Reading /space/rock/4/users/hires/recons/I21_lh_recon/surf/lh.sphere.new.reg
  Read /space/rock/4/users/hires/recons/I21_lh_recon/mri/T1.mgz
  Surface area: 869.5 cm^2
  Applying linear transform

---------------------------------------------------
#@# processing subject 8/9 I23_LH...
  Reading /space/rock/4/users/hires/recons/I23_LH/surf/lh.sphere.new.reg
  Read /space/rock/4/users/hires/recons/I23_LH/mri/T1.mgz
  Surface area: 774.1 cm^2
  Applying linear transform

---------------------------------------------------
#@# processing subject 9/9 I25_lh_recon...
  Reading /space/rock/4/users/hires/recons/I25_lh_recon/surf/lh.sphere.new.reg
  Read /space/rock/4/users/hires/recons/I25_lh_recon/mri/T1.mgz
  Surface area: 433.6 cm^2
  Applying linear transform
Finished loading all data
Avg surf area = 731.7 cm
Reading icosahedron from /homes/4/fischl/dev/freesurfer/lib/bem/ic7.tri...
writing average canonical surface to /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.sphere.new.reg
setting group surface area to be 731.7 cm^2 (scale=1.16)
writing average pial_avg surface to /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.pial_avg
writing group avg surface area 732 cm^2 into surface file
mris_make_average_surface done


#@# Making average lh.inflated surface ---------------------
Tue Sep  9 09:38:37 EDT 2008
/autofs/space/rock_004/users/hires/recons/lh.EC_average
mris_make_average_surface -i 7 -o inflated -sdir-out /space/rock/4/users/hires/recons lh inflated_avg sphere.new.reg lh.EC_average I7_ras_recon I9_recon I14 I15 G1 I20_lh_recon I21_lh_recon I23_LH I25_lh_recon
reading vertex positions from inflated...
---------------------------------------------------
hemi            = lh
avg_surf_name   = inflated_avg
canon_surf_name = sphere.new.reg
out_sname       = lh.EC_average
xform           = talairach.xfm
---------------------------------------------------



---------------------------------------------------
#@# processing subject 1/9 I7_ras_recon...
  Reading /space/rock/4/users/hires/recons/I7_ras_recon/surf/lh.sphere.new.reg
  Read /space/rock/4/users/hires/recons/I7_ras_recon/mri/T1.mgz
  Surface area: 580.0 cm^2
  Applying linear transform

---------------------------------------------------
#@# processing subject 2/9 I9_recon...
  Reading /space/rock/4/users/hires/recons/I9_recon/surf/lh.sphere.new.reg
  Read /space/rock/4/users/hires/recons/I9_recon/mri/T1
  Surface area: 653.2 cm^2
  Applying linear transform

---------------------------------------------------
#@# processing subject 3/9 I14...
  Reading /space/rock/4/users/hires/recons/I14/surf/lh.sphere.new.reg
  Read /space/rock/4/users/hires/recons/I14/mri/T1
  Surface area: 612.2 cm^2
  Applying linear transform

---------------------------------------------------
#@# processing subject 4/9 I15...
  Reading /space/rock/4/users/hires/recons/I15/surf/lh.sphere.new.reg
  Read /space/rock/4/users/hires/recons/I15/mri/T1.mgz
  Surface area: 564.3 cm^2
  Applying linear transform

---------------------------------------------------
#@# processing subject 5/9 G1...
  Reading /space/rock/4/users/hires/recons/G1/surf/lh.sphere.new.reg
  Read /space/rock/4/users/hires/recons/G1/mri/T1.mgz
  Surface area: 722.2 cm^2
  Applying linear transform

---------------------------------------------------
#@# processing subject 6/9 I20_lh_recon...
  Reading /space/rock/4/users/hires/recons/I20_lh_recon/surf/lh.sphere.new.reg
  Read /space/rock/4/users/hires/recons/I20_lh_recon/mri/T1.mgz
  Surface area: 630.5 cm^2
  Applying linear transform

---------------------------------------------------
#@# processing subject 7/9 I21_lh_recon...
  Reading /space/rock/4/users/hires/recons/I21_lh_recon/surf/lh.sphere.new.reg
  Read /space/rock/4/users/hires/recons/I21_lh_recon/mri/T1.mgz
  Surface area: 783.4 cm^2
  Applying linear transform

---------------------------------------------------
#@# processing subject 8/9 I23_LH...
  Reading /space/rock/4/users/hires/recons/I23_LH/surf/lh.sphere.new.reg
  Read /space/rock/4/users/hires/recons/I23_LH/mri/T1.mgz
  Surface area: 724.2 cm^2
  Applying linear transform

---------------------------------------------------
#@# processing subject 9/9 I25_lh_recon...
  Reading /space/rock/4/users/hires/recons/I25_lh_recon/surf/lh.sphere.new.reg
  Read /space/rock/4/users/hires/recons/I25_lh_recon/mri/T1.mgz
  Surface area: 760.6 cm^2
  Applying linear transform
Finished loading all data
Avg surf area = 670.058 cm
Reading icosahedron from /homes/4/fischl/dev/freesurfer/lib/bem/ic7.tri...
writing average canonical surface to /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.sphere.new.reg
setting group surface area to be 670.1 cm^2 (scale=0.95)
writing average inflated_avg surface to /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.inflated_avg
writing group avg surface area 670 cm^2 into surface file
mris_make_average_surface done


---------------------------------------------------



#@# Making average lh.sulc ----------------------
/autofs/space/rock_004/users/hires/recons/lh.EC_average
mris_average_curvature -o lh.EC_average sulc lh sphere.new.reg I7_ras_recon I9_recon I14 I15 G1 I20_lh_recon I21_lh_recon I23_LH I25_lh_recon /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.avg_sulc
painting output onto subject lh.EC_average.
processing subject I7_ras_recon...
processing subject I9_recon...
processing subject I14...
processing subject I15...
processing subject G1...
processing subject I20_lh_recon...
processing subject I21_lh_recon...
processing subject I23_LH...
processing subject I25_lh_recon...
reading output surface /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.sphere.new.reg...
writing blurred pattern to surface to /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.avg_sulc
writing curvature file /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.avg_sulc


#@# Making average lh.curv ----------------------
/autofs/space/rock_004/users/hires/recons/lh.EC_average
mris_average_curvature -o lh.EC_average curv lh sphere.new.reg I7_ras_recon I9_recon I14 I15 G1 I20_lh_recon I21_lh_recon I23_LH I25_lh_recon /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.avg_curv
painting output onto subject lh.EC_average.
processing subject I7_ras_recon...
processing subject I9_recon...
processing subject I14...
processing subject I15...
processing subject G1...
processing subject I20_lh_recon...
processing subject I21_lh_recon...
processing subject I23_LH...
processing subject I25_lh_recon...
reading output surface /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.sphere.new.reg...
writing blurred pattern to surface to /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.avg_curv
writing curvature file /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.avg_curv


#@# Making average lh.thickness ----------------------
/autofs/space/rock_004/users/hires/recons/lh.EC_average
mris_average_curvature -o lh.EC_average thickness lh sphere.new.reg I7_ras_recon I9_recon I14 I15 G1 I20_lh_recon I21_lh_recon I23_LH I25_lh_recon /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.avg_thickness
painting output onto subject lh.EC_average.
processing subject I7_ras_recon...
processing subject I9_recon...
processing subject I14...
processing subject I15...
processing subject G1...
processing subject I20_lh_recon...
processing subject I21_lh_recon...
processing subject I23_LH...
processing subject I25_lh_recon...
reading output surface /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.sphere.new.reg...
writing blurred pattern to surface to /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.avg_thickness
writing curvature file /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.avg_thickness


---------------------------------------------------


#@# Smoothing, inflating, etc lh ----------------

/autofs/space/rock_004/users/hires/recons/lh.EC_average/surf
mris_smooth
smoothing for 5 iterations
reading group avg surface area 737 cm^2 from file
smoothing surface tessellation for 5 iterations...
smoothing complete - recomputing first and second fundamental forms...
writing smoothed curvature to ./lh.curv
writing curvature file ./lh.curv
writing smoothed area to ./lh.area
writing curvature file ./lh.area
writing smoothed surface to ./lh.smoothwm
writing group avg surface area 737 cm^2 into surface file

mris_inflate
reading group avg surface area 737 cm^2 from file
avg radius = 44.1 mm, total surface area = 52155 mm^2
tol=1.0e-04, sigma=0.0, host=jupit, nav=16, nbrs=2, l_spring_norm=1.000, l_dist=0.100
mom=0.90, dt=0.90
desired rms height=0.015
writing inflated surface to ./lh.inflated
writing sulcal depths to ./lh.sulc
000: dt: 0.0000, rms height=0.049, avgs=16
005: dt: 0.9000, rms height=0.040, avgs=16, l_dist=0.40
010: dt: 0.9000, rms height=0.032, avgs=16, l_dist=0.40
015: dt: 0.9000, rms height=0.027, avgs=8, l_dist=0.28
020: dt: 0.9000, rms height=0.023, avgs=8, l_dist=0.28
025: dt: 0.9000, rms height=0.019, avgs=4, l_dist=0.20
030: dt: 0.9000, rms height=0.017, avgs=4, l_dist=0.20
035: dt: 0.9000, rms height=0.015, avgs=2, l_dist=0.14

inflation complete.
writing group avg surface area 737 cm^2 into surface file
writing curvature file ./lh.sulc
inflation took 2.4 minutes

mris_curvature
averaging curvature patterns 10 times.
reading group avg surface area 737 cm^2 from file
total integrated curvature = 40.384*4pi (507.479) --> -39 handles
ICI = 151.0, FI = 1533.4, variation=23665.182
writing Gaussian curvature to ./lh.white_avg.K...writing curvature file ./lh.white_avg.K
done.
writing mean curvature to ./lh.white_avg.H...writing curvature file ./lh.white_avg.H
done.

mri_annotation2label --subject lh.EC_average --hemi lh --outdir /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487 --annotation aparc.a2005s
reading group avg surface area 737 cm^2 from file
reading colortable from annotation file...
colortable with 82 entries read (originally /autofs/space/birn_044/users/christophe_atlas_rebuild/Simple_surface_labels2005.txt)
subject = lh.EC_average
annotation = aparc.a2005s
hemi = lh
outdir = (null)
surface   = white

Reading surface 
 /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.white
Loading annotations from /space/rock/4/users/hires/recons/lh.EC_average/label/lh.aparc.a2005s.annot
max index = 81
  3    395 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_cingulate-Isthmus.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_cingulate-Isthmus.label
  4   2861 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_cingulate-Main_part.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_cingulate-Main_part.label
  5   1479 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_cuneus.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_cuneus.label
  6   1838 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_frontal_inf-Opercular_part.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_frontal_inf-Opercular_part.label
  7    462 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_frontal_inf-Orbital_part.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_frontal_inf-Orbital_part.label
  8   1048 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_frontal_inf-Triangular_part.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_frontal_inf-Triangular_part.label
  9   3827 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_frontal_middle.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_frontal_middle.label
 10   8507 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_frontal_superior.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_frontal_superior.label
 11    342 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_frontomarginal.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_frontomarginal.label
 12    569 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_insular_long.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_insular_long.label
 13    949 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_insular_short.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_insular_short.label
 14   1373 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_and_S_occipital_inferior.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_and_S_occipital_inferior.label
 15   2060 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_occipital_middle.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_occipital_middle.label
 16   1316 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_occipital_superior.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_occipital_superior.label
 17   1745 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_occipit-temp_lat-Or_fusiform.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_occipit-temp_lat-Or_fusiform.label
 18   2469 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_occipit-temp_med-Lingual_part.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_occipit-temp_med-Lingual_part.label
 19   2288 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_occipit-temp_med-Parahippocampal_part.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_occipit-temp_med-Parahippocampal_part.label
 20   2488 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_orbital.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_orbital.label
 21   2208 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_paracentral.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_paracentral.label
 22   2982 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_parietal_inferior-Angular_part.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_parietal_inferior-Angular_part.label
 23   4614 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_parietal_inferior-Supramarginal_part.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_parietal_inferior-Supramarginal_part.label
 24   4105 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_parietal_superior.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_parietal_superior.label
 25   3571 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_postcentral.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_postcentral.label
 26   3992 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_precentral.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_precentral.label
 27   3558 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_precuneus.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_precuneus.label
 28   1106 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_rectus.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_rectus.label
 29    266 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_subcallosal.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_subcallosal.label
 30   1746 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_subcentral.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_subcentral.label
 31   2543 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_temporal_inferior.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_temporal_inferior.label
 32   2823 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_temporal_middle.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_temporal_middle.label
 33    749 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_temp_sup-G_temp_transv_and_interm_S.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_temp_sup-G_temp_transv_and_interm_S.label
 34   2656 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_temp_sup-Lateral_aspect.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_temp_sup-Lateral_aspect.label
 35    877 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_temp_sup-Planum_polare.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_temp_sup-Planum_polare.label
 36   1351 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_temp_sup-Planum_tempolare.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_temp_sup-Planum_tempolare.label
 37    730 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_and_S_transverse_frontopolar.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_and_S_transverse_frontopolar.label
 38    410 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.Lat_Fissure-ant_sgt-ramus_horizontal.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.Lat_Fissure-ant_sgt-ramus_horizontal.label
 39    413 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.Lat_Fissure-ant_sgt-ramus_vertical.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.Lat_Fissure-ant_sgt-ramus_vertical.label
 40   2050 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.Lat_Fissure-post_sgt.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.Lat_Fissure-post_sgt.label
 41  13887 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.Medial_wall.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.Medial_wall.label
 42   1795 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.Pole_occipital.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.Pole_occipital.label
 43   1674 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.Pole_temporal.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.Pole_temporal.label
 44   3122 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_calcarine.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_calcarine.label
 45   4802 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_central.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_central.label
 46    235 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_central_insula.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_central_insula.label
 47   5552 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_cingulate-Main_part_and_Intracingulate.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_cingulate-Main_part_and_Intracingulate.label
 48   1553 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_cingulate-Marginalis_part.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_cingulate-Marginalis_part.label
 49    843 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_circular_insula_anterior.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_circular_insula_anterior.label
 50   2214 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_circular_insula_inferior.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_circular_insula_inferior.label
 51   3081 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_circular_insula_superior.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_circular_insula_superior.label
 52    975 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_collateral_transverse_ant.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_collateral_transverse_ant.label
 53    339 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_collateral_transverse_post.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_collateral_transverse_post.label
 54   2266 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_frontal_inferior.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_frontal_inferior.label
 55   1421 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_frontal_middle.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_frontal_middle.label
 56   3034 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_frontal_superior.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_frontal_superior.label
 57    551 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_frontomarginal.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_frontomarginal.label
 58    495 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_intermedius_primus-Jensen.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_intermedius_primus-Jensen.label
 59   4390 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_intraparietal-and_Parietal_transverse.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_intraparietal-and_Parietal_transverse.label
 60    857 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_occipital_anterior.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_occipital_anterior.label
 61   1003 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_occipital_middle_and_Lunatus.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_occipital_middle_and_Lunatus.label
 62   1325 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_occipital_superior_and_transversalis.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_occipital_superior_and_transversalis.label
 63    946 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_occipito-temporal_lateral.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_occipito-temporal_lateral.label
 64   2543 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_occipito-temporal_medial_and_S_Lingual.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_occipito-temporal_medial_and_S_Lingual.label
 65   1215 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_orbital-H_shapped.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_orbital-H_shapped.label
 66    325 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_orbital_lateral.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_orbital_lateral.label
 67    806 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_orbital_medial-Or_olfactory.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_orbital_medial-Or_olfactory.label
 68    293 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_paracentral.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_paracentral.label
 69   2208 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_parieto_occipital.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_parieto_occipital.label
 70   2269 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_pericallosal.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_pericallosal.label
 71   4420 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_postcentral.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_postcentral.label
 72   1938 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_precentral-Inferior-part.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_precentral-Inferior-part.label
 73   1902 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_precentral-Superior-part.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_precentral-Superior-part.label
 74     71 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_subcentral_ant.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_subcentral_ant.label
 75    263 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_subcentral_post.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_subcentral_post.label
 76    493 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_suborbital.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_suborbital.label
 77   1446 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_subparietal.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_subparietal.label
 79   1304 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_temporal_inferior.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_temporal_inferior.label
 80   6746 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_temporal_superior.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_temporal_superior.label
 81    474 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_temporal_transverse.label
LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_temporal_transverse.label
mri_mergelabels -o /space/rock/4/users/hires/recons/lh.EC_average/label/lh.cortex.label -d /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487
Done


#@# Making rh registration template ---------
/autofs/space/rock_004/users/hires/recons/lh.EC_average
mris_make_template -norot -annot aparc rh sphere.new.reg I7_ras_recon I9_recon I14 I15 G1 I20_lh_recon I21_lh_recon I23_LH I25_lh_recon rh.reg.template.tif
not aligning hemispheres before averaging.
zeroing medial wall in aparc
creating new parameterization...

processing subject I7_ras_recon (1 of 9)
reading spherical surface /space/rock/4/users/hires/recons/I7_ras_recon/surf/rh.sphere.new.reg...
MRISread(/space/rock/4/users/hires/recons/I7_ras_recon/surf/rh.sphere.new.reg): could not open file
No such file or directory
mris_make_template: could not read surface file /space/rock/4/users/hires/recons/I7_ras_recon/surf/rh.sphere.new.reg
No such file or directory