ds114_test1_freesurfer/fsaverage/mri/subcort.prob.log

Log file for make_average_subcort
Wed Jun 30 16:36:13 EDT 2010


setenv SUBJECTS_DIR /autofs/cluster/con_002/users/fsaverage_subjs
cd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
/space/crash/1/users/greve/dev-x86_64/scripts/make_average_subcort --o subcort.prob.mgz --subjects 004 008 017 021 032 039 040 045 049 067 073 074 080 084 091 092 093 095 097 099 102 103 106 108 111 114 123 124 128 129 130 131 133 136 138 140 141 144 145 149


freesurfer-x86_64-redhat-linux-gnu-dev4-20100510
Linux tanha 2.6.18-164.11.1.el5 #1 SMP Wed Jan 20 07:32:21 EST 2010 x86_64 x86_64 x86_64 GNU/Linux
#@# 1/40 004 Wed Jun 30 16:36:13 EDT 2010

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/cluster/con_002/users/fsaverage_subjs/004/mri/aseg.mgz --inv --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --match 0 --match 3 --match 42 --match 4 --match 14 --match 15 --match 43 --match 44 --match 72 --match 75 --match 76 --match 2 --match 41 --match 7 --match 46 --match 251 --match 252 --match 253 --match 254 --match 255 --match 24 --match 31 --match 63 --match 77 --match 78 --match 79 --match 80 --match 81 --match 82 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/cluster/con_002/users/fsaverage_subjs/004/mri/aseg.mgz
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
Binarizing based on matching values
nMatch 29
 0     0
 1     3
 2    42
 3     4
 4    14
 5    15
 6    43
 7    44
 8    72
 9    75
10    76
11     2
12    41
13     7
14    46
15   251
16   252
17   253
18   254
19   255
20    24
21    31
22    63
23    77
24    78
25    79
26    80
27    81
28    82
binval        0
binvalnot     1
Found 16588456 values in range
Counting number of voxels
Found 16588456 voxels in final mask
mri_binarize done

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --min .0001 --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.004.mgh 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.004.mgh
Binarizing based on threshold
min        0.0001
max        +infinity
binval        1
binvalnot     0
Found 188760 values in range
Counting number of voxels
Found 188760 voxels in final mask
mri_binarize done
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.004.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.004.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/004/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.004.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.004.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/004/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0 
$Id: mri_convert.c,v 1.166 2010/04/15 19:03:33 nicks Exp $
reading from /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.004.mgh...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/004/mri/transforms/talairach.xfm...
Reading transform with LTAreadEx()
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/004/mri/transforms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
 1.064   0.021  -0.014   1.215;
-0.039   0.957   0.179  -5.581;
-0.013  -0.140   1.040  -7.811;
 0.000   0.000   0.000   1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: assumes that the dst volume given is the same as the dst for the transform
---------------------------------
Applying LTAtransformInterp (resample_type 0)
writing to /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.004.tal.mgh...
#@# 2/40 008 Wed Jun 30 16:36:25 EDT 2010

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/cluster/con_002/users/fsaverage_subjs/008/mri/aseg.mgz --inv --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --match 0 --match 3 --match 42 --match 4 --match 14 --match 15 --match 43 --match 44 --match 72 --match 75 --match 76 --match 2 --match 41 --match 7 --match 46 --match 251 --match 252 --match 253 --match 254 --match 255 --match 24 --match 31 --match 63 --match 77 --match 78 --match 79 --match 80 --match 81 --match 82 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/cluster/con_002/users/fsaverage_subjs/008/mri/aseg.mgz
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
Binarizing based on matching values
nMatch 29
 0     0
 1     3
 2    42
 3     4
 4    14
 5    15
 6    43
 7    44
 8    72
 9    75
10    76
11     2
12    41
13     7
14    46
15   251
16   252
17   253
18   254
19   255
20    24
21    31
22    63
23    77
24    78
25    79
26    80
27    81
28    82
binval        0
binvalnot     1
Found 16638933 values in range
Counting number of voxels
Found 16638933 voxels in final mask
mri_binarize done

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --min .0001 --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.008.mgh 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.008.mgh
Binarizing based on threshold
min        0.0001
max        +infinity
binval        1
binvalnot     0
Found 138283 values in range
Counting number of voxels
Found 138283 voxels in final mask
mri_binarize done
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.008.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.008.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/008/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.008.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.008.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/008/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0 
$Id: mri_convert.c,v 1.166 2010/04/15 19:03:33 nicks Exp $
reading from /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.008.mgh...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/008/mri/transforms/talairach.xfm...
Reading transform with LTAreadEx()
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/008/mri/transforms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
 1.078   0.008  -0.065  -1.326;
 0.013   0.967   0.518  -2.880;
 0.078  -0.495   1.073  -4.148;
 0.000   0.000   0.000   1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: assumes that the dst volume given is the same as the dst for the transform
---------------------------------
Applying LTAtransformInterp (resample_type 0)
writing to /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.008.tal.mgh...
#@# 3/40 017 Wed Jun 30 16:36:39 EDT 2010

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/cluster/con_002/users/fsaverage_subjs/017/mri/aseg.mgz --inv --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --match 0 --match 3 --match 42 --match 4 --match 14 --match 15 --match 43 --match 44 --match 72 --match 75 --match 76 --match 2 --match 41 --match 7 --match 46 --match 251 --match 252 --match 253 --match 254 --match 255 --match 24 --match 31 --match 63 --match 77 --match 78 --match 79 --match 80 --match 81 --match 82 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/cluster/con_002/users/fsaverage_subjs/017/mri/aseg.mgz
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
Binarizing based on matching values
nMatch 29
 0     0
 1     3
 2    42
 3     4
 4    14
 5    15
 6    43
 7    44
 8    72
 9    75
10    76
11     2
12    41
13     7
14    46
15   251
16   252
17   253
18   254
19   255
20    24
21    31
22    63
23    77
24    78
25    79
26    80
27    81
28    82
binval        0
binvalnot     1
Found 16577837 values in range
Counting number of voxels
Found 16577837 voxels in final mask
mri_binarize done

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --min .0001 --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.017.mgh 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.017.mgh
Binarizing based on threshold
min        0.0001
max        +infinity
binval        1
binvalnot     0
Found 199379 values in range
Counting number of voxels
Found 199379 voxels in final mask
mri_binarize done
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.017.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.017.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/017/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.017.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.017.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/017/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0 
$Id: mri_convert.c,v 1.166 2010/04/15 19:03:33 nicks Exp $
reading from /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.017.mgh...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/017/mri/transforms/talairach.xfm...
Reading transform with LTAreadEx()
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/017/mri/transforms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
 1.026   0.016  -0.014   0.744;
-0.029   0.955   0.230  -6.057;
-0.031  -0.176   1.081  -6.687;
 0.000   0.000   0.000   1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: assumes that the dst volume given is the same as the dst for the transform
---------------------------------
Applying LTAtransformInterp (resample_type 0)
writing to /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.017.tal.mgh...
#@# 4/40 021 Wed Jun 30 16:36:53 EDT 2010

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/cluster/con_002/users/fsaverage_subjs/021/mri/aseg.mgz --inv --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --match 0 --match 3 --match 42 --match 4 --match 14 --match 15 --match 43 --match 44 --match 72 --match 75 --match 76 --match 2 --match 41 --match 7 --match 46 --match 251 --match 252 --match 253 --match 254 --match 255 --match 24 --match 31 --match 63 --match 77 --match 78 --match 79 --match 80 --match 81 --match 82 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/cluster/con_002/users/fsaverage_subjs/021/mri/aseg.mgz
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
Binarizing based on matching values
nMatch 29
 0     0
 1     3
 2    42
 3     4
 4    14
 5    15
 6    43
 7    44
 8    72
 9    75
10    76
11     2
12    41
13     7
14    46
15   251
16   252
17   253
18   254
19   255
20    24
21    31
22    63
23    77
24    78
25    79
26    80
27    81
28    82
binval        0
binvalnot     1
Found 16581100 values in range
Counting number of voxels
Found 16581100 voxels in final mask
mri_binarize done

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --min .0001 --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.021.mgh 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.021.mgh
Binarizing based on threshold
min        0.0001
max        +infinity
binval        1
binvalnot     0
Found 196116 values in range
Counting number of voxels
Found 196116 voxels in final mask
mri_binarize done
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.021.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.021.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/021/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.021.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.021.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/021/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0 
$Id: mri_convert.c,v 1.166 2010/04/15 19:03:33 nicks Exp $
reading from /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.021.mgh...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/021/mri/transforms/talairach.xfm...
Reading transform with LTAreadEx()
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/021/mri/transforms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
 1.035   0.018   0.022   0.680;
-0.010   0.855   0.500  -1.836;
-0.020  -0.566   0.998  -15.552;
 0.000   0.000   0.000   1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: assumes that the dst volume given is the same as the dst for the transform
---------------------------------
Applying LTAtransformInterp (resample_type 0)
writing to /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.021.tal.mgh...
#@# 5/40 032 Wed Jun 30 16:37:05 EDT 2010

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/cluster/con_002/users/fsaverage_subjs/032/mri/aseg.mgz --inv --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --match 0 --match 3 --match 42 --match 4 --match 14 --match 15 --match 43 --match 44 --match 72 --match 75 --match 76 --match 2 --match 41 --match 7 --match 46 --match 251 --match 252 --match 253 --match 254 --match 255 --match 24 --match 31 --match 63 --match 77 --match 78 --match 79 --match 80 --match 81 --match 82 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/cluster/con_002/users/fsaverage_subjs/032/mri/aseg.mgz
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
Binarizing based on matching values
nMatch 29
 0     0
 1     3
 2    42
 3     4
 4    14
 5    15
 6    43
 7    44
 8    72
 9    75
10    76
11     2
12    41
13     7
14    46
15   251
16   252
17   253
18   254
19   255
20    24
21    31
22    63
23    77
24    78
25    79
26    80
27    81
28    82
binval        0
binvalnot     1
Found 16608904 values in range
Counting number of voxels
Found 16608904 voxels in final mask
mri_binarize done

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --min .0001 --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.032.mgh 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.032.mgh
Binarizing based on threshold
min        0.0001
max        +infinity
binval        1
binvalnot     0
Found 168312 values in range
Counting number of voxels
Found 168312 voxels in final mask
mri_binarize done
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.032.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.032.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/032/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.032.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.032.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/032/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0 
$Id: mri_convert.c,v 1.166 2010/04/15 19:03:33 nicks Exp $
reading from /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.032.mgh...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/032/mri/transforms/talairach.xfm...
Reading transform with LTAreadEx()
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/032/mri/transforms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
 1.037   0.019  -0.071   2.513;
 0.003   0.956   0.400  -7.195;
 0.070  -0.359   1.107  -14.245;
 0.000   0.000   0.000   1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: assumes that the dst volume given is the same as the dst for the transform
---------------------------------
Applying LTAtransformInterp (resample_type 0)
writing to /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.032.tal.mgh...
#@# 6/40 039 Wed Jun 30 16:37:18 EDT 2010

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/cluster/con_002/users/fsaverage_subjs/039/mri/aseg.mgz --inv --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --match 0 --match 3 --match 42 --match 4 --match 14 --match 15 --match 43 --match 44 --match 72 --match 75 --match 76 --match 2 --match 41 --match 7 --match 46 --match 251 --match 252 --match 253 --match 254 --match 255 --match 24 --match 31 --match 63 --match 77 --match 78 --match 79 --match 80 --match 81 --match 82 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/cluster/con_002/users/fsaverage_subjs/039/mri/aseg.mgz
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
Binarizing based on matching values
nMatch 29
 0     0
 1     3
 2    42
 3     4
 4    14
 5    15
 6    43
 7    44
 8    72
 9    75
10    76
11     2
12    41
13     7
14    46
15   251
16   252
17   253
18   254
19   255
20    24
21    31
22    63
23    77
24    78
25    79
26    80
27    81
28    82
binval        0
binvalnot     1
Found 16625560 values in range
Counting number of voxels
Found 16625560 voxels in final mask
mri_binarize done

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --min .0001 --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.039.mgh 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.039.mgh
Binarizing based on threshold
min        0.0001
max        +infinity
binval        1
binvalnot     0
Found 151656 values in range
Counting number of voxels
Found 151656 voxels in final mask
mri_binarize done
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.039.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.039.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/039/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.039.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.039.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/039/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0 
$Id: mri_convert.c,v 1.166 2010/04/15 19:03:33 nicks Exp $
reading from /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.039.mgh...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/039/mri/transforms/talairach.xfm...
Reading transform with LTAreadEx()
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/039/mri/transforms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
 1.106   0.020  -0.033  -1.024;
-0.029   1.011   0.407   10.473;
 0.033  -0.467   1.118   12.356;
 0.000   0.000   0.000   1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: assumes that the dst volume given is the same as the dst for the transform
---------------------------------
Applying LTAtransformInterp (resample_type 0)
writing to /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.039.tal.mgh...
#@# 7/40 040 Wed Jun 30 16:37:31 EDT 2010

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/cluster/con_002/users/fsaverage_subjs/040/mri/aseg.mgz --inv --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --match 0 --match 3 --match 42 --match 4 --match 14 --match 15 --match 43 --match 44 --match 72 --match 75 --match 76 --match 2 --match 41 --match 7 --match 46 --match 251 --match 252 --match 253 --match 254 --match 255 --match 24 --match 31 --match 63 --match 77 --match 78 --match 79 --match 80 --match 81 --match 82 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/cluster/con_002/users/fsaverage_subjs/040/mri/aseg.mgz
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
Binarizing based on matching values
nMatch 29
 0     0
 1     3
 2    42
 3     4
 4    14
 5    15
 6    43
 7    44
 8    72
 9    75
10    76
11     2
12    41
13     7
14    46
15   251
16   252
17   253
18   254
19   255
20    24
21    31
22    63
23    77
24    78
25    79
26    80
27    81
28    82
binval        0
binvalnot     1
Found 16610696 values in range
Counting number of voxels
Found 16610696 voxels in final mask
mri_binarize done

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --min .0001 --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.040.mgh 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.040.mgh
Binarizing based on threshold
min        0.0001
max        +infinity
binval        1
binvalnot     0
Found 166520 values in range
Counting number of voxels
Found 166520 voxels in final mask
mri_binarize done
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.040.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.040.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/040/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.040.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.040.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/040/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0 
$Id: mri_convert.c,v 1.166 2010/04/15 19:03:33 nicks Exp $
reading from /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.040.mgh...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/040/mri/transforms/talairach.xfm...
Reading transform with LTAreadEx()
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/040/mri/transforms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
 1.153   0.053  -0.043   1.595;
-0.034   0.999   0.426  -6.369;
 0.035  -0.381   1.182  -4.229;
 0.000   0.000   0.000   1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: assumes that the dst volume given is the same as the dst for the transform
---------------------------------
Applying LTAtransformInterp (resample_type 0)
writing to /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.040.tal.mgh...
#@# 8/40 045 Wed Jun 30 16:37:43 EDT 2010

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/cluster/con_002/users/fsaverage_subjs/045/mri/aseg.mgz --inv --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --match 0 --match 3 --match 42 --match 4 --match 14 --match 15 --match 43 --match 44 --match 72 --match 75 --match 76 --match 2 --match 41 --match 7 --match 46 --match 251 --match 252 --match 253 --match 254 --match 255 --match 24 --match 31 --match 63 --match 77 --match 78 --match 79 --match 80 --match 81 --match 82 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/cluster/con_002/users/fsaverage_subjs/045/mri/aseg.mgz
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
Binarizing based on matching values
nMatch 29
 0     0
 1     3
 2    42
 3     4
 4    14
 5    15
 6    43
 7    44
 8    72
 9    75
10    76
11     2
12    41
13     7
14    46
15   251
16   252
17   253
18   254
19   255
20    24
21    31
22    63
23    77
24    78
25    79
26    80
27    81
28    82
binval        0
binvalnot     1
Found 16622098 values in range
Counting number of voxels
Found 16622098 voxels in final mask
mri_binarize done

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --min .0001 --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.045.mgh 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.045.mgh
Binarizing based on threshold
min        0.0001
max        +infinity
binval        1
binvalnot     0
Found 155118 values in range
Counting number of voxels
Found 155118 voxels in final mask
mri_binarize done
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.045.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.045.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/045/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.045.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.045.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/045/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0 
$Id: mri_convert.c,v 1.166 2010/04/15 19:03:33 nicks Exp $
reading from /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.045.mgh...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/045/mri/transforms/talairach.xfm...
Reading transform with LTAreadEx()
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/045/mri/transforms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
 1.108  -0.021  -0.042   2.730;
-0.003   0.966   0.498  -0.153;
-0.001  -0.508   1.020  -16.887;
 0.000   0.000   0.000   1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: assumes that the dst volume given is the same as the dst for the transform
---------------------------------
Applying LTAtransformInterp (resample_type 0)
writing to /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.045.tal.mgh...
#@# 9/40 049 Wed Jun 30 16:37:57 EDT 2010

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/cluster/con_002/users/fsaverage_subjs/049/mri/aseg.mgz --inv --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --match 0 --match 3 --match 42 --match 4 --match 14 --match 15 --match 43 --match 44 --match 72 --match 75 --match 76 --match 2 --match 41 --match 7 --match 46 --match 251 --match 252 --match 253 --match 254 --match 255 --match 24 --match 31 --match 63 --match 77 --match 78 --match 79 --match 80 --match 81 --match 82 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/cluster/con_002/users/fsaverage_subjs/049/mri/aseg.mgz
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
Binarizing based on matching values
nMatch 29
 0     0
 1     3
 2    42
 3     4
 4    14
 5    15
 6    43
 7    44
 8    72
 9    75
10    76
11     2
12    41
13     7
14    46
15   251
16   252
17   253
18   254
19   255
20    24
21    31
22    63
23    77
24    78
25    79
26    80
27    81
28    82
binval        0
binvalnot     1
Found 16597199 values in range
Counting number of voxels
Found 16597199 voxels in final mask
mri_binarize done

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --min .0001 --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.049.mgh 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.049.mgh
Binarizing based on threshold
min        0.0001
max        +infinity
binval        1
binvalnot     0
Found 180017 values in range
Counting number of voxels
Found 180017 voxels in final mask
mri_binarize done
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.049.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.049.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/049/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.049.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.049.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/049/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0 
$Id: mri_convert.c,v 1.166 2010/04/15 19:03:33 nicks Exp $
reading from /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.049.mgh...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/049/mri/transforms/talairach.xfm...
Reading transform with LTAreadEx()
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/049/mri/transforms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
 1.054   0.038  -0.063   3.807;
-0.018   0.996   0.261  -6.111;
 0.061  -0.182   1.110  -15.857;
 0.000   0.000   0.000   1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: assumes that the dst volume given is the same as the dst for the transform
---------------------------------
Applying LTAtransformInterp (resample_type 0)
writing to /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.049.tal.mgh...
#@# 10/40 067 Wed Jun 30 16:38:14 EDT 2010

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/cluster/con_002/users/fsaverage_subjs/067/mri/aseg.mgz --inv --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --match 0 --match 3 --match 42 --match 4 --match 14 --match 15 --match 43 --match 44 --match 72 --match 75 --match 76 --match 2 --match 41 --match 7 --match 46 --match 251 --match 252 --match 253 --match 254 --match 255 --match 24 --match 31 --match 63 --match 77 --match 78 --match 79 --match 80 --match 81 --match 82 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/cluster/con_002/users/fsaverage_subjs/067/mri/aseg.mgz
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
Binarizing based on matching values
nMatch 29
 0     0
 1     3
 2    42
 3     4
 4    14
 5    15
 6    43
 7    44
 8    72
 9    75
10    76
11     2
12    41
13     7
14    46
15   251
16   252
17   253
18   254
19   255
20    24
21    31
22    63
23    77
24    78
25    79
26    80
27    81
28    82
binval        0
binvalnot     1
Found 16592777 values in range
Counting number of voxels
Found 16592777 voxels in final mask
mri_binarize done

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --min .0001 --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.067.mgh 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.067.mgh
Binarizing based on threshold
min        0.0001
max        +infinity
binval        1
binvalnot     0
Found 184439 values in range
Counting number of voxels
Found 184439 voxels in final mask
mri_binarize done
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.067.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.067.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/067/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.067.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.067.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/067/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0 
$Id: mri_convert.c,v 1.166 2010/04/15 19:03:33 nicks Exp $
reading from /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.067.mgh...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/067/mri/transforms/talairach.xfm...
Reading transform with LTAreadEx()
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/067/mri/transforms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
 1.039  -0.015  -0.043   1.396;
 0.007   0.863   0.463   7.329;
 0.053  -0.524   0.936  -8.426;
 0.000   0.000   0.000   1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: assumes that the dst volume given is the same as the dst for the transform
---------------------------------
Applying LTAtransformInterp (resample_type 0)
writing to /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.067.tal.mgh...
#@# 11/40 073 Wed Jun 30 16:38:29 EDT 2010

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/cluster/con_002/users/fsaverage_subjs/073/mri/aseg.mgz --inv --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --match 0 --match 3 --match 42 --match 4 --match 14 --match 15 --match 43 --match 44 --match 72 --match 75 --match 76 --match 2 --match 41 --match 7 --match 46 --match 251 --match 252 --match 253 --match 254 --match 255 --match 24 --match 31 --match 63 --match 77 --match 78 --match 79 --match 80 --match 81 --match 82 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/cluster/con_002/users/fsaverage_subjs/073/mri/aseg.mgz
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
Binarizing based on matching values
nMatch 29
 0     0
 1     3
 2    42
 3     4
 4    14
 5    15
 6    43
 7    44
 8    72
 9    75
10    76
11     2
12    41
13     7
14    46
15   251
16   252
17   253
18   254
19   255
20    24
21    31
22    63
23    77
24    78
25    79
26    80
27    81
28    82
binval        0
binvalnot     1
Found 16570987 values in range
Counting number of voxels
Found 16570987 voxels in final mask
mri_binarize done

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --min .0001 --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.073.mgh 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.073.mgh
Binarizing based on threshold
min        0.0001
max        +infinity
binval        1
binvalnot     0
Found 206229 values in range
Counting number of voxels
Found 206229 voxels in final mask
mri_binarize done
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.073.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.073.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/073/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.073.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.073.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/073/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0 
$Id: mri_convert.c,v 1.166 2010/04/15 19:03:33 nicks Exp $
reading from /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.073.mgh...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/073/mri/transforms/talairach.xfm...
Reading transform with LTAreadEx()
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/073/mri/transforms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
 0.975  -0.013   0.012  -0.233;
 0.003   0.985   0.258  -2.522;
 0.001  -0.245   1.057  -1.905;
 0.000   0.000   0.000   1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: assumes that the dst volume given is the same as the dst for the transform
---------------------------------
Applying LTAtransformInterp (resample_type 0)
writing to /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.073.tal.mgh...
#@# 12/40 074 Wed Jun 30 16:38:46 EDT 2010

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/cluster/con_002/users/fsaverage_subjs/074/mri/aseg.mgz --inv --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --match 0 --match 3 --match 42 --match 4 --match 14 --match 15 --match 43 --match 44 --match 72 --match 75 --match 76 --match 2 --match 41 --match 7 --match 46 --match 251 --match 252 --match 253 --match 254 --match 255 --match 24 --match 31 --match 63 --match 77 --match 78 --match 79 --match 80 --match 81 --match 82 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/cluster/con_002/users/fsaverage_subjs/074/mri/aseg.mgz
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
Binarizing based on matching values
nMatch 29
 0     0
 1     3
 2    42
 3     4
 4    14
 5    15
 6    43
 7    44
 8    72
 9    75
10    76
11     2
12    41
13     7
14    46
15   251
16   252
17   253
18   254
19   255
20    24
21    31
22    63
23    77
24    78
25    79
26    80
27    81
28    82
binval        0
binvalnot     1
Found 16609864 values in range
Counting number of voxels
Found 16609864 voxels in final mask
mri_binarize done

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --min .0001 --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.074.mgh 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.074.mgh
Binarizing based on threshold
min        0.0001
max        +infinity
binval        1
binvalnot     0
Found 167352 values in range
Counting number of voxels
Found 167352 voxels in final mask
mri_binarize done
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.074.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.074.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/074/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.074.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.074.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/074/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0 
$Id: mri_convert.c,v 1.166 2010/04/15 19:03:33 nicks Exp $
reading from /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.074.mgh...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/074/mri/transforms/talairach.xfm...
Reading transform with LTAreadEx()
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/074/mri/transforms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
 1.043   0.009  -0.019   1.838;
 0.012   0.953   0.438  -6.409;
 0.001  -0.525   1.025  -22.463;
 0.000   0.000   0.000   1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: assumes that the dst volume given is the same as the dst for the transform
---------------------------------
Applying LTAtransformInterp (resample_type 0)
writing to /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.074.tal.mgh...
#@# 13/40 080 Wed Jun 30 16:39:03 EDT 2010

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/cluster/con_002/users/fsaverage_subjs/080/mri/aseg.mgz --inv --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --match 0 --match 3 --match 42 --match 4 --match 14 --match 15 --match 43 --match 44 --match 72 --match 75 --match 76 --match 2 --match 41 --match 7 --match 46 --match 251 --match 252 --match 253 --match 254 --match 255 --match 24 --match 31 --match 63 --match 77 --match 78 --match 79 --match 80 --match 81 --match 82 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/cluster/con_002/users/fsaverage_subjs/080/mri/aseg.mgz
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
Binarizing based on matching values
nMatch 29
 0     0
 1     3
 2    42
 3     4
 4    14
 5    15
 6    43
 7    44
 8    72
 9    75
10    76
11     2
12    41
13     7
14    46
15   251
16   252
17   253
18   254
19   255
20    24
21    31
22    63
23    77
24    78
25    79
26    80
27    81
28    82
binval        0
binvalnot     1
Found 16555361 values in range
Counting number of voxels
Found 16555361 voxels in final mask
mri_binarize done

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --min .0001 --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.080.mgh 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.080.mgh
Binarizing based on threshold
min        0.0001
max        +infinity
binval        1
binvalnot     0
Found 221855 values in range
Counting number of voxels
Found 221855 voxels in final mask
mri_binarize done
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.080.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.080.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/080/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.080.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.080.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/080/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0 
$Id: mri_convert.c,v 1.166 2010/04/15 19:03:33 nicks Exp $
reading from /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.080.mgh...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/080/mri/transforms/talairach.xfm...
Reading transform with LTAreadEx()
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/080/mri/transforms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
 1.026  -0.041  -0.050  -0.657;
 0.012   0.926   0.395   10.775;
 0.018  -0.412   0.979   17.387;
 0.000   0.000   0.000   1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: assumes that the dst volume given is the same as the dst for the transform
---------------------------------
Applying LTAtransformInterp (resample_type 0)
writing to /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.080.tal.mgh...
#@# 14/40 084 Wed Jun 30 16:39:19 EDT 2010

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/cluster/con_002/users/fsaverage_subjs/084/mri/aseg.mgz --inv --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --match 0 --match 3 --match 42 --match 4 --match 14 --match 15 --match 43 --match 44 --match 72 --match 75 --match 76 --match 2 --match 41 --match 7 --match 46 --match 251 --match 252 --match 253 --match 254 --match 255 --match 24 --match 31 --match 63 --match 77 --match 78 --match 79 --match 80 --match 81 --match 82 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/cluster/con_002/users/fsaverage_subjs/084/mri/aseg.mgz
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
Binarizing based on matching values
nMatch 29
 0     0
 1     3
 2    42
 3     4
 4    14
 5    15
 6    43
 7    44
 8    72
 9    75
10    76
11     2
12    41
13     7
14    46
15   251
16   252
17   253
18   254
19   255
20    24
21    31
22    63
23    77
24    78
25    79
26    80
27    81
28    82
binval        0
binvalnot     1
Found 16588697 values in range
Counting number of voxels
Found 16588697 voxels in final mask
mri_binarize done

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --min .0001 --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.084.mgh 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.084.mgh
Binarizing based on threshold
min        0.0001
max        +infinity
binval        1
binvalnot     0
Found 188519 values in range
Counting number of voxels
Found 188519 voxels in final mask
mri_binarize done
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.084.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.084.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/084/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.084.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.084.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/084/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0 
$Id: mri_convert.c,v 1.166 2010/04/15 19:03:33 nicks Exp $
reading from /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.084.mgh...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/084/mri/transforms/talairach.xfm...
Reading transform with LTAreadEx()
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/084/mri/transforms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
 1.031   0.047  -0.041   0.560;
-0.011   0.946   0.461  -0.365;
 0.053  -0.459   1.092  -3.968;
 0.000   0.000   0.000   1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: assumes that the dst volume given is the same as the dst for the transform
---------------------------------
Applying LTAtransformInterp (resample_type 0)
writing to /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.084.tal.mgh...
#@# 15/40 091 Wed Jun 30 16:39:33 EDT 2010

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/cluster/con_002/users/fsaverage_subjs/091/mri/aseg.mgz --inv --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --match 0 --match 3 --match 42 --match 4 --match 14 --match 15 --match 43 --match 44 --match 72 --match 75 --match 76 --match 2 --match 41 --match 7 --match 46 --match 251 --match 252 --match 253 --match 254 --match 255 --match 24 --match 31 --match 63 --match 77 --match 78 --match 79 --match 80 --match 81 --match 82 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/cluster/con_002/users/fsaverage_subjs/091/mri/aseg.mgz
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
Binarizing based on matching values
nMatch 29
 0     0
 1     3
 2    42
 3     4
 4    14
 5    15
 6    43
 7    44
 8    72
 9    75
10    76
11     2
12    41
13     7
14    46
15   251
16   252
17   253
18   254
19   255
20    24
21    31
22    63
23    77
24    78
25    79
26    80
27    81
28    82
binval        0
binvalnot     1
Found 16593724 values in range
Counting number of voxels
Found 16593724 voxels in final mask
mri_binarize done

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --min .0001 --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.091.mgh 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.091.mgh
Binarizing based on threshold
min        0.0001
max        +infinity
binval        1
binvalnot     0
Found 183492 values in range
Counting number of voxels
Found 183492 voxels in final mask
mri_binarize done
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.091.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.091.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/091/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.091.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.091.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/091/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0 
$Id: mri_convert.c,v 1.166 2010/04/15 19:03:33 nicks Exp $
reading from /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.091.mgh...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/091/mri/transforms/talairach.xfm...
Reading transform with LTAreadEx()
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/091/mri/transforms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
 1.095  -0.033  -0.036   0.365;
 0.018   1.000   0.345  -0.684;
 0.018  -0.298   1.023  -3.019;
 0.000   0.000   0.000   1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: assumes that the dst volume given is the same as the dst for the transform
---------------------------------
Applying LTAtransformInterp (resample_type 0)
writing to /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.091.tal.mgh...
#@# 16/40 092 Wed Jun 30 16:39:48 EDT 2010

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/cluster/con_002/users/fsaverage_subjs/092/mri/aseg.mgz --inv --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --match 0 --match 3 --match 42 --match 4 --match 14 --match 15 --match 43 --match 44 --match 72 --match 75 --match 76 --match 2 --match 41 --match 7 --match 46 --match 251 --match 252 --match 253 --match 254 --match 255 --match 24 --match 31 --match 63 --match 77 --match 78 --match 79 --match 80 --match 81 --match 82 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/cluster/con_002/users/fsaverage_subjs/092/mri/aseg.mgz
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
Binarizing based on matching values
nMatch 29
 0     0
 1     3
 2    42
 3     4
 4    14
 5    15
 6    43
 7    44
 8    72
 9    75
10    76
11     2
12    41
13     7
14    46
15   251
16   252
17   253
18   254
19   255
20    24
21    31
22    63
23    77
24    78
25    79
26    80
27    81
28    82
binval        0
binvalnot     1
Found 16598875 values in range
Counting number of voxels
Found 16598875 voxels in final mask
mri_binarize done

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --min .0001 --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.092.mgh 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.092.mgh
Binarizing based on threshold
min        0.0001
max        +infinity
binval        1
binvalnot     0
Found 178341 values in range
Counting number of voxels
Found 178341 voxels in final mask
mri_binarize done
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.092.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.092.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/092/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.092.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.092.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/092/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0 
$Id: mri_convert.c,v 1.166 2010/04/15 19:03:33 nicks Exp $
reading from /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.092.mgh...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/092/mri/transforms/talairach.xfm...
Reading transform with LTAreadEx()
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/092/mri/transforms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
 1.025   0.005   0.007  -1.994;
 0.049   1.070   0.253  -5.817;
-0.045  -0.287   1.077  -4.128;
 0.000   0.000   0.000   1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: assumes that the dst volume given is the same as the dst for the transform
---------------------------------
Applying LTAtransformInterp (resample_type 0)
writing to /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.092.tal.mgh...
#@# 17/40 093 Wed Jun 30 16:40:04 EDT 2010

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/cluster/con_002/users/fsaverage_subjs/093/mri/aseg.mgz --inv --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --match 0 --match 3 --match 42 --match 4 --match 14 --match 15 --match 43 --match 44 --match 72 --match 75 --match 76 --match 2 --match 41 --match 7 --match 46 --match 251 --match 252 --match 253 --match 254 --match 255 --match 24 --match 31 --match 63 --match 77 --match 78 --match 79 --match 80 --match 81 --match 82 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/cluster/con_002/users/fsaverage_subjs/093/mri/aseg.mgz
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
Binarizing based on matching values
nMatch 29
 0     0
 1     3
 2    42
 3     4
 4    14
 5    15
 6    43
 7    44
 8    72
 9    75
10    76
11     2
12    41
13     7
14    46
15   251
16   252
17   253
18   254
19   255
20    24
21    31
22    63
23    77
24    78
25    79
26    80
27    81
28    82
binval        0
binvalnot     1
Found 16592918 values in range
Counting number of voxels
Found 16592918 voxels in final mask
mri_binarize done

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --min .0001 --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.093.mgh 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.093.mgh
Binarizing based on threshold
min        0.0001
max        +infinity
binval        1
binvalnot     0
Found 184298 values in range
Counting number of voxels
Found 184298 voxels in final mask
mri_binarize done
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.093.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.093.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/093/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.093.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.093.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/093/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0 
$Id: mri_convert.c,v 1.166 2010/04/15 19:03:33 nicks Exp $
reading from /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.093.mgh...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/093/mri/transforms/talairach.xfm...
Reading transform with LTAreadEx()
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/093/mri/transforms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
 1.079   0.017   0.005  -0.148;
-0.014   1.000   0.256  -3.052;
-0.006  -0.227   1.112  -4.527;
 0.000   0.000   0.000   1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: assumes that the dst volume given is the same as the dst for the transform
---------------------------------
Applying LTAtransformInterp (resample_type 0)
writing to /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.093.tal.mgh...
#@# 18/40 095 Wed Jun 30 16:40:20 EDT 2010

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/cluster/con_002/users/fsaverage_subjs/095/mri/aseg.mgz --inv --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --match 0 --match 3 --match 42 --match 4 --match 14 --match 15 --match 43 --match 44 --match 72 --match 75 --match 76 --match 2 --match 41 --match 7 --match 46 --match 251 --match 252 --match 253 --match 254 --match 255 --match 24 --match 31 --match 63 --match 77 --match 78 --match 79 --match 80 --match 81 --match 82 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/cluster/con_002/users/fsaverage_subjs/095/mri/aseg.mgz
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
Binarizing based on matching values
nMatch 29
 0     0
 1     3
 2    42
 3     4
 4    14
 5    15
 6    43
 7    44
 8    72
 9    75
10    76
11     2
12    41
13     7
14    46
15   251
16   252
17   253
18   254
19   255
20    24
21    31
22    63
23    77
24    78
25    79
26    80
27    81
28    82
binval        0
binvalnot     1
Found 16616731 values in range
Counting number of voxels
Found 16616731 voxels in final mask
mri_binarize done

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --min .0001 --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.095.mgh 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.095.mgh
Binarizing based on threshold
min        0.0001
max        +infinity
binval        1
binvalnot     0
Found 160485 values in range
Counting number of voxels
Found 160485 voxels in final mask
mri_binarize done
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.095.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.095.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/095/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.095.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.095.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/095/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0 
$Id: mri_convert.c,v 1.166 2010/04/15 19:03:33 nicks Exp $
reading from /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.095.mgh...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/095/mri/transforms/talairach.xfm...
Reading transform with LTAreadEx()
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/095/mri/transforms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
 1.152  -0.017  -0.050  -1.810;
 0.037   0.908   0.620   8.061;
 0.058  -0.669   1.011  -2.689;
 0.000   0.000   0.000   1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: assumes that the dst volume given is the same as the dst for the transform
---------------------------------
Applying LTAtransformInterp (resample_type 0)
writing to /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.095.tal.mgh...
#@# 19/40 097 Wed Jun 30 16:40:36 EDT 2010

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/cluster/con_002/users/fsaverage_subjs/097/mri/aseg.mgz --inv --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --match 0 --match 3 --match 42 --match 4 --match 14 --match 15 --match 43 --match 44 --match 72 --match 75 --match 76 --match 2 --match 41 --match 7 --match 46 --match 251 --match 252 --match 253 --match 254 --match 255 --match 24 --match 31 --match 63 --match 77 --match 78 --match 79 --match 80 --match 81 --match 82 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/cluster/con_002/users/fsaverage_subjs/097/mri/aseg.mgz
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
Binarizing based on matching values
nMatch 29
 0     0
 1     3
 2    42
 3     4
 4    14
 5    15
 6    43
 7    44
 8    72
 9    75
10    76
11     2
12    41
13     7
14    46
15   251
16   252
17   253
18   254
19   255
20    24
21    31
22    63
23    77
24    78
25    79
26    80
27    81
28    82
binval        0
binvalnot     1
Found 16602567 values in range
Counting number of voxels
Found 16602567 voxels in final mask
mri_binarize done

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --min .0001 --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.097.mgh 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.097.mgh
Binarizing based on threshold
min        0.0001
max        +infinity
binval        1
binvalnot     0
Found 174649 values in range
Counting number of voxels
Found 174649 voxels in final mask
mri_binarize done
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.097.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.097.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/097/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.097.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.097.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/097/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0 
$Id: mri_convert.c,v 1.166 2010/04/15 19:03:33 nicks Exp $
reading from /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.097.mgh...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/097/mri/transforms/talairach.xfm...
Reading transform with LTAreadEx()
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/097/mri/transforms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
 1.063   0.052  -0.005   2.109;
-0.037   0.952   0.341   2.250;
 0.010  -0.329   1.076   2.126;
 0.000   0.000   0.000   1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: assumes that the dst volume given is the same as the dst for the transform
---------------------------------
Applying LTAtransformInterp (resample_type 0)
writing to /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.097.tal.mgh...
#@# 20/40 099 Wed Jun 30 16:40:53 EDT 2010

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/cluster/con_002/users/fsaverage_subjs/099/mri/aseg.mgz --inv --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --match 0 --match 3 --match 42 --match 4 --match 14 --match 15 --match 43 --match 44 --match 72 --match 75 --match 76 --match 2 --match 41 --match 7 --match 46 --match 251 --match 252 --match 253 --match 254 --match 255 --match 24 --match 31 --match 63 --match 77 --match 78 --match 79 --match 80 --match 81 --match 82 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/cluster/con_002/users/fsaverage_subjs/099/mri/aseg.mgz
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
Binarizing based on matching values
nMatch 29
 0     0
 1     3
 2    42
 3     4
 4    14
 5    15
 6    43
 7    44
 8    72
 9    75
10    76
11     2
12    41
13     7
14    46
15   251
16   252
17   253
18   254
19   255
20    24
21    31
22    63
23    77
24    78
25    79
26    80
27    81
28    82
binval        0
binvalnot     1
Found 16631425 values in range
Counting number of voxels
Found 16631425 voxels in final mask
mri_binarize done

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --min .0001 --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.099.mgh 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.099.mgh
Binarizing based on threshold
min        0.0001
max        +infinity
binval        1
binvalnot     0
Found 145791 values in range
Counting number of voxels
Found 145791 voxels in final mask
mri_binarize done
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.099.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.099.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/099/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.099.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.099.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/099/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0 
$Id: mri_convert.c,v 1.166 2010/04/15 19:03:33 nicks Exp $
reading from /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.099.mgh...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/099/mri/transforms/talairach.xfm...
Reading transform with LTAreadEx()
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/099/mri/transforms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
 1.067  -0.007   0.024  -2.347;
 0.087   1.126   0.336   7.607;
-0.051  -0.323   1.215   0.393;
 0.000   0.000   0.000   1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: assumes that the dst volume given is the same as the dst for the transform
---------------------------------
Applying LTAtransformInterp (resample_type 0)
writing to /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.099.tal.mgh...
#@# 21/40 102 Wed Jun 30 16:41:08 EDT 2010

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/cluster/con_002/users/fsaverage_subjs/102/mri/aseg.mgz --inv --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --match 0 --match 3 --match 42 --match 4 --match 14 --match 15 --match 43 --match 44 --match 72 --match 75 --match 76 --match 2 --match 41 --match 7 --match 46 --match 251 --match 252 --match 253 --match 254 --match 255 --match 24 --match 31 --match 63 --match 77 --match 78 --match 79 --match 80 --match 81 --match 82 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/cluster/con_002/users/fsaverage_subjs/102/mri/aseg.mgz
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
Binarizing based on matching values
nMatch 29
 0     0
 1     3
 2    42
 3     4
 4    14
 5    15
 6    43
 7    44
 8    72
 9    75
10    76
11     2
12    41
13     7
14    46
15   251
16   252
17   253
18   254
19   255
20    24
21    31
22    63
23    77
24    78
25    79
26    80
27    81
28    82
binval        0
binvalnot     1
Found 16616414 values in range
Counting number of voxels
Found 16616414 voxels in final mask
mri_binarize done

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --min .0001 --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.102.mgh 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.102.mgh
Binarizing based on threshold
min        0.0001
max        +infinity
binval        1
binvalnot     0
Found 160802 values in range
Counting number of voxels
Found 160802 voxels in final mask
mri_binarize done
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.102.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.102.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/102/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.102.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.102.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/102/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0 
$Id: mri_convert.c,v 1.166 2010/04/15 19:03:33 nicks Exp $
reading from /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.102.mgh...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/102/mri/transforms/talairach.xfm...
Reading transform with LTAreadEx()
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/102/mri/transforms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
 1.055  -0.014  -0.057   0.425;
 0.001   0.978   0.375  -5.599;
 0.031  -0.370   1.117  -22.018;
 0.000   0.000   0.000   1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: assumes that the dst volume given is the same as the dst for the transform
---------------------------------
Applying LTAtransformInterp (resample_type 0)
writing to /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.102.tal.mgh...
#@# 22/40 103 Wed Jun 30 16:41:23 EDT 2010

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/cluster/con_002/users/fsaverage_subjs/103/mri/aseg.mgz --inv --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --match 0 --match 3 --match 42 --match 4 --match 14 --match 15 --match 43 --match 44 --match 72 --match 75 --match 76 --match 2 --match 41 --match 7 --match 46 --match 251 --match 252 --match 253 --match 254 --match 255 --match 24 --match 31 --match 63 --match 77 --match 78 --match 79 --match 80 --match 81 --match 82 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/cluster/con_002/users/fsaverage_subjs/103/mri/aseg.mgz
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
Binarizing based on matching values
nMatch 29
 0     0
 1     3
 2    42
 3     4
 4    14
 5    15
 6    43
 7    44
 8    72
 9    75
10    76
11     2
12    41
13     7
14    46
15   251
16   252
17   253
18   254
19   255
20    24
21    31
22    63
23    77
24    78
25    79
26    80
27    81
28    82
binval        0
binvalnot     1
Found 16610662 values in range
Counting number of voxels
Found 16610662 voxels in final mask
mri_binarize done

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --min .0001 --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.103.mgh 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.103.mgh
Binarizing based on threshold
min        0.0001
max        +infinity
binval        1
binvalnot     0
Found 166554 values in range
Counting number of voxels
Found 166554 voxels in final mask
mri_binarize done
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.103.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.103.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/103/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.103.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.103.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/103/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0 
$Id: mri_convert.c,v 1.166 2010/04/15 19:03:33 nicks Exp $
reading from /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.103.mgh...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/103/mri/transforms/talairach.xfm...
Reading transform with LTAreadEx()
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/103/mri/transforms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
 1.082   0.013  -0.013   0.415;
-0.034   1.018   0.129  -12.480;
 0.007  -0.069   1.168  -15.080;
 0.000   0.000   0.000   1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: assumes that the dst volume given is the same as the dst for the transform
---------------------------------
Applying LTAtransformInterp (resample_type 0)
writing to /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.103.tal.mgh...
#@# 23/40 106 Wed Jun 30 16:41:38 EDT 2010

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/cluster/con_002/users/fsaverage_subjs/106/mri/aseg.mgz --inv --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --match 0 --match 3 --match 42 --match 4 --match 14 --match 15 --match 43 --match 44 --match 72 --match 75 --match 76 --match 2 --match 41 --match 7 --match 46 --match 251 --match 252 --match 253 --match 254 --match 255 --match 24 --match 31 --match 63 --match 77 --match 78 --match 79 --match 80 --match 81 --match 82 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/cluster/con_002/users/fsaverage_subjs/106/mri/aseg.mgz
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
Binarizing based on matching values
nMatch 29
 0     0
 1     3
 2    42
 3     4
 4    14
 5    15
 6    43
 7    44
 8    72
 9    75
10    76
11     2
12    41
13     7
14    46
15   251
16   252
17   253
18   254
19   255
20    24
21    31
22    63
23    77
24    78
25    79
26    80
27    81
28    82
binval        0
binvalnot     1
Found 16591098 values in range
Counting number of voxels
Found 16591098 voxels in final mask
mri_binarize done

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --min .0001 --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.106.mgh 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.106.mgh
Binarizing based on threshold
min        0.0001
max        +infinity
binval        1
binvalnot     0
Found 186118 values in range
Counting number of voxels
Found 186118 voxels in final mask
mri_binarize done
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.106.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.106.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/106/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.106.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.106.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/106/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0 
$Id: mri_convert.c,v 1.166 2010/04/15 19:03:33 nicks Exp $
reading from /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.106.mgh...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/106/mri/transforms/talairach.xfm...
Reading transform with LTAreadEx()
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/106/mri/transforms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
 1.135  -0.006   0.020  -1.434;
 0.000   1.083   0.160  -6.217;
 0.005  -0.103   1.178  -8.462;
 0.000   0.000   0.000   1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: assumes that the dst volume given is the same as the dst for the transform
---------------------------------
Applying LTAtransformInterp (resample_type 0)
writing to /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.106.tal.mgh...
#@# 24/40 108 Wed Jun 30 16:41:54 EDT 2010

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/cluster/con_002/users/fsaverage_subjs/108/mri/aseg.mgz --inv --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --match 0 --match 3 --match 42 --match 4 --match 14 --match 15 --match 43 --match 44 --match 72 --match 75 --match 76 --match 2 --match 41 --match 7 --match 46 --match 251 --match 252 --match 253 --match 254 --match 255 --match 24 --match 31 --match 63 --match 77 --match 78 --match 79 --match 80 --match 81 --match 82 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/cluster/con_002/users/fsaverage_subjs/108/mri/aseg.mgz
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
Binarizing based on matching values
nMatch 29
 0     0
 1     3
 2    42
 3     4
 4    14
 5    15
 6    43
 7    44
 8    72
 9    75
10    76
11     2
12    41
13     7
14    46
15   251
16   252
17   253
18   254
19   255
20    24
21    31
22    63
23    77
24    78
25    79
26    80
27    81
28    82
binval        0
binvalnot     1
Found 16564809 values in range
Counting number of voxels
Found 16564809 voxels in final mask
mri_binarize done

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --min .0001 --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.108.mgh 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.108.mgh
Binarizing based on threshold
min        0.0001
max        +infinity
binval        1
binvalnot     0
Found 212407 values in range
Counting number of voxels
Found 212407 voxels in final mask
mri_binarize done
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.108.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.108.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/108/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.108.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.108.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/108/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0 
$Id: mri_convert.c,v 1.166 2010/04/15 19:03:33 nicks Exp $
reading from /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.108.mgh...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/108/mri/transforms/talairach.xfm...
Reading transform with LTAreadEx()
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/108/mri/transforms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
 1.094  -0.012  -0.020   0.590;
 0.031   1.002   0.150  -8.276;
 0.013  -0.105   1.107  -4.787;
 0.000   0.000   0.000   1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: assumes that the dst volume given is the same as the dst for the transform
---------------------------------
Applying LTAtransformInterp (resample_type 0)
writing to /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.108.tal.mgh...
#@# 25/40 111 Wed Jun 30 16:42:10 EDT 2010

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/cluster/con_002/users/fsaverage_subjs/111/mri/aseg.mgz --inv --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --match 0 --match 3 --match 42 --match 4 --match 14 --match 15 --match 43 --match 44 --match 72 --match 75 --match 76 --match 2 --match 41 --match 7 --match 46 --match 251 --match 252 --match 253 --match 254 --match 255 --match 24 --match 31 --match 63 --match 77 --match 78 --match 79 --match 80 --match 81 --match 82 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/cluster/con_002/users/fsaverage_subjs/111/mri/aseg.mgz
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
Binarizing based on matching values
nMatch 29
 0     0
 1     3
 2    42
 3     4
 4    14
 5    15
 6    43
 7    44
 8    72
 9    75
10    76
11     2
12    41
13     7
14    46
15   251
16   252
17   253
18   254
19   255
20    24
21    31
22    63
23    77
24    78
25    79
26    80
27    81
28    82
binval        0
binvalnot     1
Found 16601310 values in range
Counting number of voxels
Found 16601310 voxels in final mask
mri_binarize done

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --min .0001 --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.111.mgh 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.111.mgh
Binarizing based on threshold
min        0.0001
max        +infinity
binval        1
binvalnot     0
Found 175906 values in range
Counting number of voxels
Found 175906 voxels in final mask
mri_binarize done
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.111.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.111.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/111/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.111.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.111.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/111/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0 
$Id: mri_convert.c,v 1.166 2010/04/15 19:03:33 nicks Exp $
reading from /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.111.mgh...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/111/mri/transforms/talairach.xfm...
Reading transform with LTAreadEx()
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/111/mri/transforms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
 1.082  -0.014  -0.018   0.969;
-0.019   0.974   0.286  -7.449;
 0.034  -0.297   1.100  -5.073;
 0.000   0.000   0.000   1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: assumes that the dst volume given is the same as the dst for the transform
---------------------------------
Applying LTAtransformInterp (resample_type 0)
writing to /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.111.tal.mgh...
#@# 26/40 114 Wed Jun 30 16:42:27 EDT 2010

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/cluster/con_002/users/fsaverage_subjs/114/mri/aseg.mgz --inv --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --match 0 --match 3 --match 42 --match 4 --match 14 --match 15 --match 43 --match 44 --match 72 --match 75 --match 76 --match 2 --match 41 --match 7 --match 46 --match 251 --match 252 --match 253 --match 254 --match 255 --match 24 --match 31 --match 63 --match 77 --match 78 --match 79 --match 80 --match 81 --match 82 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/cluster/con_002/users/fsaverage_subjs/114/mri/aseg.mgz
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
Binarizing based on matching values
nMatch 29
 0     0
 1     3
 2    42
 3     4
 4    14
 5    15
 6    43
 7    44
 8    72
 9    75
10    76
11     2
12    41
13     7
14    46
15   251
16   252
17   253
18   254
19   255
20    24
21    31
22    63
23    77
24    78
25    79
26    80
27    81
28    82
binval        0
binvalnot     1
Found 16622800 values in range
Counting number of voxels
Found 16622800 voxels in final mask
mri_binarize done

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --min .0001 --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.114.mgh 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.114.mgh
Binarizing based on threshold
min        0.0001
max        +infinity
binval        1
binvalnot     0
Found 154416 values in range
Counting number of voxels
Found 154416 voxels in final mask
mri_binarize done
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.114.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.114.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/114/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.114.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.114.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/114/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0 
$Id: mri_convert.c,v 1.166 2010/04/15 19:03:33 nicks Exp $
reading from /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.114.mgh...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/114/mri/transforms/talairach.xfm...
Reading transform with LTAreadEx()
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/114/mri/transforms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
 1.094   0.020  -0.011   1.008;
-0.022   1.016   0.521  -1.038;
 0.037  -0.673   1.129  -20.590;
 0.000   0.000   0.000   1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: assumes that the dst volume given is the same as the dst for the transform
---------------------------------
Applying LTAtransformInterp (resample_type 0)
writing to /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.114.tal.mgh...
#@# 27/40 123 Wed Jun 30 16:42:42 EDT 2010

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/cluster/con_002/users/fsaverage_subjs/123/mri/aseg.mgz --inv --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --match 0 --match 3 --match 42 --match 4 --match 14 --match 15 --match 43 --match 44 --match 72 --match 75 --match 76 --match 2 --match 41 --match 7 --match 46 --match 251 --match 252 --match 253 --match 254 --match 255 --match 24 --match 31 --match 63 --match 77 --match 78 --match 79 --match 80 --match 81 --match 82 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/cluster/con_002/users/fsaverage_subjs/123/mri/aseg.mgz
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
Binarizing based on matching values
nMatch 29
 0     0
 1     3
 2    42
 3     4
 4    14
 5    15
 6    43
 7    44
 8    72
 9    75
10    76
11     2
12    41
13     7
14    46
15   251
16   252
17   253
18   254
19   255
20    24
21    31
22    63
23    77
24    78
25    79
26    80
27    81
28    82
binval        0
binvalnot     1
Found 16620534 values in range
Counting number of voxels
Found 16620534 voxels in final mask
mri_binarize done

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --min .0001 --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.123.mgh 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.123.mgh
Binarizing based on threshold
min        0.0001
max        +infinity
binval        1
binvalnot     0
Found 156682 values in range
Counting number of voxels
Found 156682 voxels in final mask
mri_binarize done
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.123.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.123.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/123/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.123.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.123.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/123/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0 
$Id: mri_convert.c,v 1.166 2010/04/15 19:03:33 nicks Exp $
reading from /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.123.mgh...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/123/mri/transforms/talairach.xfm...
Reading transform with LTAreadEx()
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/123/mri/transforms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
 1.126   0.017  -0.049  -2.084;
 0.026   1.109   0.260  -3.929;
 0.061  -0.047   1.153   1.415;
 0.000   0.000   0.000   1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: assumes that the dst volume given is the same as the dst for the transform
---------------------------------
Applying LTAtransformInterp (resample_type 0)
writing to /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.123.tal.mgh...
#@# 28/40 124 Wed Jun 30 16:42:59 EDT 2010

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/cluster/con_002/users/fsaverage_subjs/124/mri/aseg.mgz --inv --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --match 0 --match 3 --match 42 --match 4 --match 14 --match 15 --match 43 --match 44 --match 72 --match 75 --match 76 --match 2 --match 41 --match 7 --match 46 --match 251 --match 252 --match 253 --match 254 --match 255 --match 24 --match 31 --match 63 --match 77 --match 78 --match 79 --match 80 --match 81 --match 82 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/cluster/con_002/users/fsaverage_subjs/124/mri/aseg.mgz
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
Binarizing based on matching values
nMatch 29
 0     0
 1     3
 2    42
 3     4
 4    14
 5    15
 6    43
 7    44
 8    72
 9    75
10    76
11     2
12    41
13     7
14    46
15   251
16   252
17   253
18   254
19   255
20    24
21    31
22    63
23    77
24    78
25    79
26    80
27    81
28    82
binval        0
binvalnot     1
Found 16608148 values in range
Counting number of voxels
Found 16608148 voxels in final mask
mri_binarize done

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --min .0001 --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.124.mgh 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.124.mgh
Binarizing based on threshold
min        0.0001
max        +infinity
binval        1
binvalnot     0
Found 169068 values in range
Counting number of voxels
Found 169068 voxels in final mask
mri_binarize done
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.124.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.124.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/124/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.124.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.124.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/124/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0 
$Id: mri_convert.c,v 1.166 2010/04/15 19:03:33 nicks Exp $
reading from /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.124.mgh...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/124/mri/transforms/talairach.xfm...
Reading transform with LTAreadEx()
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/124/mri/transforms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
 1.207  -0.053  -0.034   4.103;
 0.075   1.077   0.011  -8.889;
-0.009  -0.017   1.171  -30.397;
 0.000   0.000   0.000   1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: assumes that the dst volume given is the same as the dst for the transform
---------------------------------
Applying LTAtransformInterp (resample_type 0)
writing to /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.124.tal.mgh...
#@# 29/40 128 Wed Jun 30 16:43:16 EDT 2010

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/cluster/con_002/users/fsaverage_subjs/128/mri/aseg.mgz --inv --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --match 0 --match 3 --match 42 --match 4 --match 14 --match 15 --match 43 --match 44 --match 72 --match 75 --match 76 --match 2 --match 41 --match 7 --match 46 --match 251 --match 252 --match 253 --match 254 --match 255 --match 24 --match 31 --match 63 --match 77 --match 78 --match 79 --match 80 --match 81 --match 82 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/cluster/con_002/users/fsaverage_subjs/128/mri/aseg.mgz
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
Binarizing based on matching values
nMatch 29
 0     0
 1     3
 2    42
 3     4
 4    14
 5    15
 6    43
 7    44
 8    72
 9    75
10    76
11     2
12    41
13     7
14    46
15   251
16   252
17   253
18   254
19   255
20    24
21    31
22    63
23    77
24    78
25    79
26    80
27    81
28    82
binval        0
binvalnot     1
Found 16659363 values in range
Counting number of voxels
Found 16659363 voxels in final mask
mri_binarize done

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --min .0001 --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.128.mgh 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.128.mgh
Binarizing based on threshold
min        0.0001
max        +infinity
binval        1
binvalnot     0
Found 117853 values in range
Counting number of voxels
Found 117853 voxels in final mask
mri_binarize done
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.128.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.128.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/128/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.128.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.128.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/128/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0 
$Id: mri_convert.c,v 1.166 2010/04/15 19:03:33 nicks Exp $
reading from /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.128.mgh...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/128/mri/transforms/talairach.xfm...
Reading transform with LTAreadEx()
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/128/mri/transforms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
 1.051  -0.006  -0.029   1.658;
 0.049   1.055   0.478   4.115;
-0.007  -0.563   1.112  -10.474;
 0.000   0.000   0.000   1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: assumes that the dst volume given is the same as the dst for the transform
---------------------------------
Applying LTAtransformInterp (resample_type 0)
writing to /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.128.tal.mgh...
#@# 30/40 129 Wed Jun 30 16:43:31 EDT 2010

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/cluster/con_002/users/fsaverage_subjs/129/mri/aseg.mgz --inv --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --match 0 --match 3 --match 42 --match 4 --match 14 --match 15 --match 43 --match 44 --match 72 --match 75 --match 76 --match 2 --match 41 --match 7 --match 46 --match 251 --match 252 --match 253 --match 254 --match 255 --match 24 --match 31 --match 63 --match 77 --match 78 --match 79 --match 80 --match 81 --match 82 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/cluster/con_002/users/fsaverage_subjs/129/mri/aseg.mgz
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
Binarizing based on matching values
nMatch 29
 0     0
 1     3
 2    42
 3     4
 4    14
 5    15
 6    43
 7    44
 8    72
 9    75
10    76
11     2
12    41
13     7
14    46
15   251
16   252
17   253
18   254
19   255
20    24
21    31
22    63
23    77
24    78
25    79
26    80
27    81
28    82
binval        0
binvalnot     1
Found 16626223 values in range
Counting number of voxels
Found 16626223 voxels in final mask
mri_binarize done

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --min .0001 --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.129.mgh 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.129.mgh
Binarizing based on threshold
min        0.0001
max        +infinity
binval        1
binvalnot     0
Found 150993 values in range
Counting number of voxels
Found 150993 voxels in final mask
mri_binarize done
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.129.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.129.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/129/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.129.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.129.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/129/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0 
$Id: mri_convert.c,v 1.166 2010/04/15 19:03:33 nicks Exp $
reading from /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.129.mgh...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/129/mri/transforms/talairach.xfm...
Reading transform with LTAreadEx()
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/129/mri/transforms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
 1.067  -0.006  -0.149   7.899;
 0.063   1.091   0.318  -16.585;
 0.176  -0.307   1.153  -32.104;
 0.000   0.000   0.000   1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: assumes that the dst volume given is the same as the dst for the transform
---------------------------------
Applying LTAtransformInterp (resample_type 0)
writing to /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.129.tal.mgh...
#@# 31/40 130 Wed Jun 30 16:43:47 EDT 2010

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/cluster/con_002/users/fsaverage_subjs/130/mri/aseg.mgz --inv --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --match 0 --match 3 --match 42 --match 4 --match 14 --match 15 --match 43 --match 44 --match 72 --match 75 --match 76 --match 2 --match 41 --match 7 --match 46 --match 251 --match 252 --match 253 --match 254 --match 255 --match 24 --match 31 --match 63 --match 77 --match 78 --match 79 --match 80 --match 81 --match 82 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/cluster/con_002/users/fsaverage_subjs/130/mri/aseg.mgz
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
Binarizing based on matching values
nMatch 29
 0     0
 1     3
 2    42
 3     4
 4    14
 5    15
 6    43
 7    44
 8    72
 9    75
10    76
11     2
12    41
13     7
14    46
15   251
16   252
17   253
18   254
19   255
20    24
21    31
22    63
23    77
24    78
25    79
26    80
27    81
28    82
binval        0
binvalnot     1
Found 16593734 values in range
Counting number of voxels
Found 16593734 voxels in final mask
mri_binarize done

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --min .0001 --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.130.mgh 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.130.mgh
Binarizing based on threshold
min        0.0001
max        +infinity
binval        1
binvalnot     0
Found 183482 values in range
Counting number of voxels
Found 183482 voxels in final mask
mri_binarize done
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.130.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.130.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/130/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.130.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.130.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/130/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0 
$Id: mri_convert.c,v 1.166 2010/04/15 19:03:33 nicks Exp $
reading from /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.130.mgh...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/130/mri/transforms/talairach.xfm...
Reading transform with LTAreadEx()
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/130/mri/transforms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
 1.058   0.030   0.001   2.317;
-0.008   1.016   0.055  -10.263;
-0.025  -0.032   1.212  -8.328;
 0.000   0.000   0.000   1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: assumes that the dst volume given is the same as the dst for the transform
---------------------------------
Applying LTAtransformInterp (resample_type 0)
writing to /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.130.tal.mgh...
#@# 32/40 131 Wed Jun 30 16:44:03 EDT 2010

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/cluster/con_002/users/fsaverage_subjs/131/mri/aseg.mgz --inv --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --match 0 --match 3 --match 42 --match 4 --match 14 --match 15 --match 43 --match 44 --match 72 --match 75 --match 76 --match 2 --match 41 --match 7 --match 46 --match 251 --match 252 --match 253 --match 254 --match 255 --match 24 --match 31 --match 63 --match 77 --match 78 --match 79 --match 80 --match 81 --match 82 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/cluster/con_002/users/fsaverage_subjs/131/mri/aseg.mgz
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
Binarizing based on matching values
nMatch 29
 0     0
 1     3
 2    42
 3     4
 4    14
 5    15
 6    43
 7    44
 8    72
 9    75
10    76
11     2
12    41
13     7
14    46
15   251
16   252
17   253
18   254
19   255
20    24
21    31
22    63
23    77
24    78
25    79
26    80
27    81
28    82
binval        0
binvalnot     1
Found 16628536 values in range
Counting number of voxels
Found 16628536 voxels in final mask
mri_binarize done

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --min .0001 --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.131.mgh 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.131.mgh
Binarizing based on threshold
min        0.0001
max        +infinity
binval        1
binvalnot     0
Found 148680 values in range
Counting number of voxels
Found 148680 voxels in final mask
mri_binarize done
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.131.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.131.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/131/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.131.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.131.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/131/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0 
$Id: mri_convert.c,v 1.166 2010/04/15 19:03:33 nicks Exp $
reading from /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.131.mgh...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/131/mri/transforms/talairach.xfm...
Reading transform with LTAreadEx()
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/131/mri/transforms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
 1.120   0.013  -0.007   0.076;
-0.051   1.076   0.268  -10.794;
 0.021  -0.348   1.135  -40.251;
 0.000   0.000   0.000   1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: assumes that the dst volume given is the same as the dst for the transform
---------------------------------
Applying LTAtransformInterp (resample_type 0)
writing to /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.131.tal.mgh...
#@# 33/40 133 Wed Jun 30 16:44:19 EDT 2010

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/cluster/con_002/users/fsaverage_subjs/133/mri/aseg.mgz --inv --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --match 0 --match 3 --match 42 --match 4 --match 14 --match 15 --match 43 --match 44 --match 72 --match 75 --match 76 --match 2 --match 41 --match 7 --match 46 --match 251 --match 252 --match 253 --match 254 --match 255 --match 24 --match 31 --match 63 --match 77 --match 78 --match 79 --match 80 --match 81 --match 82 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/cluster/con_002/users/fsaverage_subjs/133/mri/aseg.mgz
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
Binarizing based on matching values
nMatch 29
 0     0
 1     3
 2    42
 3     4
 4    14
 5    15
 6    43
 7    44
 8    72
 9    75
10    76
11     2
12    41
13     7
14    46
15   251
16   252
17   253
18   254
19   255
20    24
21    31
22    63
23    77
24    78
25    79
26    80
27    81
28    82
binval        0
binvalnot     1
Found 16607631 values in range
Counting number of voxels
Found 16607631 voxels in final mask
mri_binarize done

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --min .0001 --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.133.mgh 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.133.mgh
Binarizing based on threshold
min        0.0001
max        +infinity
binval        1
binvalnot     0
Found 169585 values in range
Counting number of voxels
Found 169585 voxels in final mask
mri_binarize done
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.133.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.133.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/133/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.133.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.133.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/133/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0 
$Id: mri_convert.c,v 1.166 2010/04/15 19:03:33 nicks Exp $
reading from /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.133.mgh...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/133/mri/transforms/talairach.xfm...
Reading transform with LTAreadEx()
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/133/mri/transforms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
 1.093  -0.027   0.039  -3.127;
 0.043   1.034  -0.079  -2.014;
-0.082   0.132   1.163  -34.705;
 0.000   0.000   0.000   1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: assumes that the dst volume given is the same as the dst for the transform
---------------------------------
Applying LTAtransformInterp (resample_type 0)
writing to /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.133.tal.mgh...
#@# 34/40 136 Wed Jun 30 16:44:36 EDT 2010

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/cluster/con_002/users/fsaverage_subjs/136/mri/aseg.mgz --inv --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --match 0 --match 3 --match 42 --match 4 --match 14 --match 15 --match 43 --match 44 --match 72 --match 75 --match 76 --match 2 --match 41 --match 7 --match 46 --match 251 --match 252 --match 253 --match 254 --match 255 --match 24 --match 31 --match 63 --match 77 --match 78 --match 79 --match 80 --match 81 --match 82 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/cluster/con_002/users/fsaverage_subjs/136/mri/aseg.mgz
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
Binarizing based on matching values
nMatch 29
 0     0
 1     3
 2    42
 3     4
 4    14
 5    15
 6    43
 7    44
 8    72
 9    75
10    76
11     2
12    41
13     7
14    46
15   251
16   252
17   253
18   254
19   255
20    24
21    31
22    63
23    77
24    78
25    79
26    80
27    81
28    82
binval        0
binvalnot     1
Found 16626117 values in range
Counting number of voxels
Found 16626117 voxels in final mask
mri_binarize done

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --min .0001 --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.136.mgh 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.136.mgh
Binarizing based on threshold
min        0.0001
max        +infinity
binval        1
binvalnot     0
Found 151099 values in range
Counting number of voxels
Found 151099 voxels in final mask
mri_binarize done
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.136.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.136.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/136/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.136.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.136.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/136/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0 
$Id: mri_convert.c,v 1.166 2010/04/15 19:03:33 nicks Exp $
reading from /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.136.mgh...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/136/mri/transforms/talairach.xfm...
Reading transform with LTAreadEx()
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/136/mri/transforms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
 1.099   0.012  -0.067   2.615;
-0.032   1.099   0.312  -1.111;
 0.080  -0.360   1.218  -25.416;
 0.000   0.000   0.000   1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: assumes that the dst volume given is the same as the dst for the transform
---------------------------------
Applying LTAtransformInterp (resample_type 0)
writing to /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.136.tal.mgh...
#@# 35/40 138 Wed Jun 30 16:44:52 EDT 2010

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/cluster/con_002/users/fsaverage_subjs/138/mri/aseg.mgz --inv --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --match 0 --match 3 --match 42 --match 4 --match 14 --match 15 --match 43 --match 44 --match 72 --match 75 --match 76 --match 2 --match 41 --match 7 --match 46 --match 251 --match 252 --match 253 --match 254 --match 255 --match 24 --match 31 --match 63 --match 77 --match 78 --match 79 --match 80 --match 81 --match 82 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/cluster/con_002/users/fsaverage_subjs/138/mri/aseg.mgz
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
Binarizing based on matching values
nMatch 29
 0     0
 1     3
 2    42
 3     4
 4    14
 5    15
 6    43
 7    44
 8    72
 9    75
10    76
11     2
12    41
13     7
14    46
15   251
16   252
17   253
18   254
19   255
20    24
21    31
22    63
23    77
24    78
25    79
26    80
27    81
28    82
binval        0
binvalnot     1
Found 16589171 values in range
Counting number of voxels
Found 16589171 voxels in final mask
mri_binarize done

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --min .0001 --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.138.mgh 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.138.mgh
Binarizing based on threshold
min        0.0001
max        +infinity
binval        1
binvalnot     0
Found 188045 values in range
Counting number of voxels
Found 188045 voxels in final mask
mri_binarize done
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.138.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.138.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/138/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.138.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.138.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/138/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0 
$Id: mri_convert.c,v 1.166 2010/04/15 19:03:33 nicks Exp $
reading from /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.138.mgh...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/138/mri/transforms/talairach.xfm...
Reading transform with LTAreadEx()
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/138/mri/transforms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
 1.157   0.009   0.044  -0.137;
-0.024   1.104   0.178  -3.370;
-0.005  -0.105   1.162  -27.350;
 0.000   0.000   0.000   1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: assumes that the dst volume given is the same as the dst for the transform
---------------------------------
Applying LTAtransformInterp (resample_type 0)
writing to /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.138.tal.mgh...
#@# 36/40 140 Wed Jun 30 16:45:08 EDT 2010

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/cluster/con_002/users/fsaverage_subjs/140/mri/aseg.mgz --inv --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --match 0 --match 3 --match 42 --match 4 --match 14 --match 15 --match 43 --match 44 --match 72 --match 75 --match 76 --match 2 --match 41 --match 7 --match 46 --match 251 --match 252 --match 253 --match 254 --match 255 --match 24 --match 31 --match 63 --match 77 --match 78 --match 79 --match 80 --match 81 --match 82 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/cluster/con_002/users/fsaverage_subjs/140/mri/aseg.mgz
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
Binarizing based on matching values
nMatch 29
 0     0
 1     3
 2    42
 3     4
 4    14
 5    15
 6    43
 7    44
 8    72
 9    75
10    76
11     2
12    41
13     7
14    46
15   251
16   252
17   253
18   254
19   255
20    24
21    31
22    63
23    77
24    78
25    79
26    80
27    81
28    82
binval        0
binvalnot     1
Found 16583132 values in range
Counting number of voxels
Found 16583132 voxels in final mask
mri_binarize done

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --min .0001 --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.140.mgh 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.140.mgh
Binarizing based on threshold
min        0.0001
max        +infinity
binval        1
binvalnot     0
Found 194084 values in range
Counting number of voxels
Found 194084 voxels in final mask
mri_binarize done
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.140.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.140.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/140/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.140.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.140.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/140/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0 
$Id: mri_convert.c,v 1.166 2010/04/15 19:03:33 nicks Exp $
reading from /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.140.mgh...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/140/mri/transforms/talairach.xfm...
Reading transform with LTAreadEx()
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/140/mri/transforms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
 1.088   0.017  -0.017   1.708;
 0.004   1.016   0.185  -15.780;
-0.014  -0.125   1.109  -24.485;
 0.000   0.000   0.000   1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: assumes that the dst volume given is the same as the dst for the transform
---------------------------------
Applying LTAtransformInterp (resample_type 0)
writing to /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.140.tal.mgh...
#@# 37/40 141 Wed Jun 30 16:45:25 EDT 2010

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/cluster/con_002/users/fsaverage_subjs/141/mri/aseg.mgz --inv --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --match 0 --match 3 --match 42 --match 4 --match 14 --match 15 --match 43 --match 44 --match 72 --match 75 --match 76 --match 2 --match 41 --match 7 --match 46 --match 251 --match 252 --match 253 --match 254 --match 255 --match 24 --match 31 --match 63 --match 77 --match 78 --match 79 --match 80 --match 81 --match 82 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/cluster/con_002/users/fsaverage_subjs/141/mri/aseg.mgz
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
Binarizing based on matching values
nMatch 29
 0     0
 1     3
 2    42
 3     4
 4    14
 5    15
 6    43
 7    44
 8    72
 9    75
10    76
11     2
12    41
13     7
14    46
15   251
16   252
17   253
18   254
19   255
20    24
21    31
22    63
23    77
24    78
25    79
26    80
27    81
28    82
binval        0
binvalnot     1
Found 16590562 values in range
Counting number of voxels
Found 16590562 voxels in final mask
mri_binarize done

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --min .0001 --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.141.mgh 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.141.mgh
Binarizing based on threshold
min        0.0001
max        +infinity
binval        1
binvalnot     0
Found 186654 values in range
Counting number of voxels
Found 186654 voxels in final mask
mri_binarize done
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.141.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.141.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/141/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.141.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.141.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/141/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0 
$Id: mri_convert.c,v 1.166 2010/04/15 19:03:33 nicks Exp $
reading from /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.141.mgh...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/141/mri/transforms/talairach.xfm...
Reading transform with LTAreadEx()
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/141/mri/transforms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
 1.179  -0.015  -0.003   2.031;
 0.017   1.035  -0.022  -6.320;
 0.008   0.066   1.138  -37.722;
 0.000   0.000   0.000   1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: assumes that the dst volume given is the same as the dst for the transform
---------------------------------
Applying LTAtransformInterp (resample_type 0)
writing to /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.141.tal.mgh...
#@# 38/40 144 Wed Jun 30 16:45:42 EDT 2010

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/cluster/con_002/users/fsaverage_subjs/144/mri/aseg.mgz --inv --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --match 0 --match 3 --match 42 --match 4 --match 14 --match 15 --match 43 --match 44 --match 72 --match 75 --match 76 --match 2 --match 41 --match 7 --match 46 --match 251 --match 252 --match 253 --match 254 --match 255 --match 24 --match 31 --match 63 --match 77 --match 78 --match 79 --match 80 --match 81 --match 82 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/cluster/con_002/users/fsaverage_subjs/144/mri/aseg.mgz
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
Binarizing based on matching values
nMatch 29
 0     0
 1     3
 2    42
 3     4
 4    14
 5    15
 6    43
 7    44
 8    72
 9    75
10    76
11     2
12    41
13     7
14    46
15   251
16   252
17   253
18   254
19   255
20    24
21    31
22    63
23    77
24    78
25    79
26    80
27    81
28    82
binval        0
binvalnot     1
Found 16593528 values in range
Counting number of voxels
Found 16593528 voxels in final mask
mri_binarize done

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --min .0001 --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.144.mgh 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.144.mgh
Binarizing based on threshold
min        0.0001
max        +infinity
binval        1
binvalnot     0
Found 183688 values in range
Counting number of voxels
Found 183688 voxels in final mask
mri_binarize done
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.144.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.144.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/144/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.144.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.144.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/144/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0 
$Id: mri_convert.c,v 1.166 2010/04/15 19:03:33 nicks Exp $
reading from /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.144.mgh...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/144/mri/transforms/talairach.xfm...
Reading transform with LTAreadEx()
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/144/mri/transforms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
 1.010   0.040   0.048  -1.615;
-0.094   0.830   0.601  -19.629;
-0.049  -0.599   0.971  -13.235;
 0.000   0.000   0.000   1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: assumes that the dst volume given is the same as the dst for the transform
---------------------------------
Applying LTAtransformInterp (resample_type 0)
writing to /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.144.tal.mgh...
#@# 39/40 145 Wed Jun 30 16:45:57 EDT 2010

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/cluster/con_002/users/fsaverage_subjs/145/mri/aseg.mgz --inv --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --match 0 --match 3 --match 42 --match 4 --match 14 --match 15 --match 43 --match 44 --match 72 --match 75 --match 76 --match 2 --match 41 --match 7 --match 46 --match 251 --match 252 --match 253 --match 254 --match 255 --match 24 --match 31 --match 63 --match 77 --match 78 --match 79 --match 80 --match 81 --match 82 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/cluster/con_002/users/fsaverage_subjs/145/mri/aseg.mgz
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
Binarizing based on matching values
nMatch 29
 0     0
 1     3
 2    42
 3     4
 4    14
 5    15
 6    43
 7    44
 8    72
 9    75
10    76
11     2
12    41
13     7
14    46
15   251
16   252
17   253
18   254
19   255
20    24
21    31
22    63
23    77
24    78
25    79
26    80
27    81
28    82
binval        0
binvalnot     1
Found 16603759 values in range
Counting number of voxels
Found 16603759 voxels in final mask
mri_binarize done

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --min .0001 --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.145.mgh 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.145.mgh
Binarizing based on threshold
min        0.0001
max        +infinity
binval        1
binvalnot     0
Found 173457 values in range
Counting number of voxels
Found 173457 voxels in final mask
mri_binarize done
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.145.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.145.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/145/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.145.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.145.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/145/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0 
$Id: mri_convert.c,v 1.166 2010/04/15 19:03:33 nicks Exp $
reading from /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.145.mgh...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/145/mri/transforms/talairach.xfm...
Reading transform with LTAreadEx()
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/145/mri/transforms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
 1.014  -0.034   0.017  -0.059;
-0.001   0.962   0.384  -10.687;
-0.035  -0.432   1.021  -16.439;
 0.000   0.000   0.000   1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: assumes that the dst volume given is the same as the dst for the transform
---------------------------------
Applying LTAtransformInterp (resample_type 0)
writing to /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.145.tal.mgh...
#@# 40/40 149 Wed Jun 30 16:46:14 EDT 2010

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/cluster/con_002/users/fsaverage_subjs/149/mri/aseg.mgz --inv --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --match 0 --match 3 --match 42 --match 4 --match 14 --match 15 --match 43 --match 44 --match 72 --match 75 --match 76 --match 2 --match 41 --match 7 --match 46 --match 251 --match 252 --match 253 --match 254 --match 255 --match 24 --match 31 --match 63 --match 77 --match 78 --match 79 --match 80 --match 81 --match 82 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/cluster/con_002/users/fsaverage_subjs/149/mri/aseg.mgz
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
Binarizing based on matching values
nMatch 29
 0     0
 1     3
 2    42
 3     4
 4    14
 5    15
 6    43
 7    44
 8    72
 9    75
10    76
11     2
12    41
13     7
14    46
15   251
16   252
17   253
18   254
19   255
20    24
21    31
22    63
23    77
24    78
25    79
26    80
27    81
28    82
binval        0
binvalnot     1
Found 16607515 values in range
Counting number of voxels
Found 16607515 voxels in final mask
mri_binarize done

$Id: mri_binarize.c,v 1.23 2010/04/02 18:37:53 greve Exp $
cwd /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri
cmdline mri_binarize --i /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh --min .0001 --o /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.149.mgh 
sysname  Linux
hostname tanha
machine  x86_64
user     greve

input      /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/junk.mgh
frame      0
nErode3d   0
nErode2d   0
output     /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.149.mgh
Binarizing based on threshold
min        0.0001
max        +infinity
binval        1
binvalnot     0
Found 169701 values in range
Counting number of voxels
Found 169701 voxels in final mask
mri_binarize done
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.149.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.149.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/149/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0
mri_convert /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.149.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.149.tal.mgh --apply_transform /autofs/cluster/con_002/users/fsaverage_subjs/149/mri/transforms/talairach.xfm --resample_type nearest -oc 0 0 0 
$Id: mri_convert.c,v 1.166 2010/04/15 19:03:33 nicks Exp $
reading from /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.149.mgh...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/149/mri/transforms/talairach.xfm...
Reading transform with LTAreadEx()
INFO: Applying transformation from file /autofs/cluster/con_002/users/fsaverage_subjs/149/mri/transforms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
 1.106  -0.018  -0.003   0.309;
 0.048   0.948   0.571  -0.368;
-0.025  -0.633   1.059   13.632;
 0.000   0.000   0.000   1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: assumes that the dst volume given is the same as the dst for the transform
---------------------------------
Applying LTAtransformInterp (resample_type 0)
writing to /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.149.tal.mgh...
mri_concat /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.004.tal.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.008.tal.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.017.tal.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.021.tal.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.032.tal.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.039.tal.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.040.tal.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.045.tal.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.049.tal.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.067.tal.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.073.tal.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.074.tal.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.080.tal.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.084.tal.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.091.tal.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.092.tal.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.093.tal.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.095.tal.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.097.tal.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.099.tal.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.102.tal.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.103.tal.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.106.tal.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.108.tal.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.111.tal.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.114.tal.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.123.tal.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.124.tal.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.128.tal.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.129.tal.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.130.tal.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.131.tal.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.133.tal.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.136.tal.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.138.tal.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.140.tal.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.141.tal.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.144.tal.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.145.tal.mgh /autofs/space/crash_001/users/greve/freesurferx86/subjects/fsaverage/mri/tmpdir.make_average_subcort/subcort.mask.149.tal.mgh --mean --o subcort.prob.mgz
ninputs = 40
Checking inputs
nframestot = 40
Allocing output
Done allocing
nframes = 40
Computing mean across frames
Writing to subcort.prob.mgz
Wed Jun 30 16:49:03 EDT 2010
make_average_subcort done