randomized sound presentations + removed lights ON at the end

passive.ipynb

@@ -2,7 +2,7 @@
  "cells": [
   {
    "cell_type": "code",
-   "execution_count": 23,
+   "execution_count": 1,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -54,16 +54,16 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 24,
+   "execution_count": 2,
    "metadata": {},
    "outputs": [],
    "source": [
-    "cfg_filename = os.path.join('profiles', 'passive.json')"
+    "cfg_filename = os.path.join('profiles', 'passive_FDA.json')"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 25,
+   "execution_count": 3,
    "metadata": {
     "scrolled": false
    },
@@ -94,7 +94,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 26,
+   "execution_count": 4,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -137,7 +137,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 27,
+   "execution_count": 5,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -147,7 +147,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 28,
+   "execution_count": 6,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -158,7 +158,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 29,
+   "execution_count": 7,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -173,7 +173,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 30,
+   "execution_count": 8,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -199,7 +199,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 31,
+   "execution_count": 9,
    "metadata": {
     "scrolled": true
    },
@@ -209,6 +209,7 @@
      "output_type": "stream",
      "text": [
       "Webcam stream 1024.0:768.0 at 30.00 FPS started\n",
+      "{-1: 'noise', 0: 'silence', 1: 'F2', 2: 'F4', 3: 'D4', 4: 'D5', 5: 'F3', 6: 'I2', 7: 'D1', 8: 'F1', 9: 'I3', 10: 'D6', 11: 'I1', 12: 'I4', 13: 'F5', 14: 'D2', 15: 'D3'}\n",
       "Position tracker stopped\n",
       "Video writer stopped\n",
       "Camera released\n"
@@ -270,12 +271,23 @@
     "    0:  'silence'\n",
     "}\n",
     "\n",
-    "sound_order = 1\n",
-    "for s_type in ('F', 'D', 'I', 'L'):\n",
-    "    keys = sorted([key for key in sounds.keys() if key.startswith(s_type)])\n",
-    "    for key in keys:\n",
-    "        commutator[sound_order] = key\n",
-    "        sound_order += 1\n",
+    "# ordered sound presentations - F, D, I, L\n",
+    "# sound_order = 1\n",
+    "# for s_type in ('F', 'D', 'I', 'L'):\n",
+    "#     keys = sorted([key for key in sounds.keys() if key.startswith(s_type)])\n",
+    "#     for key in keys:\n",
+    "#         commutator[sound_order] = key\n",
+    "#         sound_order += 1\n",
+    "\n",
+    "# random sound presentations\n",
+    "sound_keys = [key for key in sounds.keys() if not key.startswith('noise')]\n",
+    "comm_keys  = [i+1 for i in list(range(len(sound_keys)))]\n",
+    "for i in comm_keys:\n",
+    "    key = sound_keys.pop(random.randrange(len(sound_keys)))\n",
+    "    commutator[i] = key\n",
+    "\n",
+    "print(commutator)\n",
+    "\n",
     "sc = mp.Process(target=SoundController.run, args=(sound, status, cfg['sound'], commutator))\n",
     "sc.start()\n",
     "\n",
@@ -443,9 +455,9 @@
     "    for t in timers:\n",
     "        t.cancel()\n",
     "    \n",
-    "    if board.is_light_off:\n",
-    "        board.switch_light()  # turn light back on\n",
-    "        time.sleep(0.1)\n",
+    "    #if board.is_light_off:\n",
+    "    #    board.switch_light()  # turn light back on\n",
+    "    #    time.sleep(0.1)\n",
     "    board.exit()\n",
     "    \n",
     "    if cfg['experiment']['enable_motors']:\n",
@@ -478,7 +490,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 32,
+   "execution_count": 10,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -490,14 +502,14 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 33,
+   "execution_count": 11,
    "metadata": {},
    "outputs": [
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "D:\\runSIT\\..\\pipeline\\postprocessing\\pack.py:59: UserWarning: loadtxt: Empty input file: \"sessions\\000000_hippoSIT_2023-07-11_09-32-45\\islands.csv\"\n",
+      "D:\\runSIT\\..\\pipeline\\postprocessing\\pack.py:59: UserWarning: loadtxt: Empty input file: \"sessions\\60_SIT_passive_2023-09-06_14-45-21\\islands.csv\"\n",
       "  data = np.loadtxt(filename, delimiter=',', skiprows=1)\n"
      ]
     },
@@ -508,7 +520,7 @@
      "traceback": [
       "\u001b[1;31m---------------------------------------------------------------------------\u001b[0m",
       "\u001b[1;31mIndexError\u001b[0m                                Traceback (most recent call last)",
-      "\u001b[1;32m<ipython-input-33-df6d003c4298>\u001b[0m in \u001b[0;36m<module>\u001b[1;34m\u001b[0m\n\u001b[0;32m      3\u001b[0m \u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m      4\u001b[0m \u001b[1;31m# do pack data to HDF5\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m----> 5\u001b[1;33m \u001b[0mh5name\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0mpack\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0msession_path\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m      6\u001b[0m \u001b[0mtrial\u001b[0m \u001b[1;33m=\u001b[0m \u001b[1;36m0\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n",
+      "\u001b[1;32m<ipython-input-11-df6d003c4298>\u001b[0m in \u001b[0;36m<module>\u001b[1;34m\u001b[0m\n\u001b[0;32m      3\u001b[0m \u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m      4\u001b[0m \u001b[1;31m# do pack data to HDF5\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m----> 5\u001b[1;33m \u001b[0mh5name\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0mpack\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0msession_path\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m      6\u001b[0m \u001b[0mtrial\u001b[0m \u001b[1;33m=\u001b[0m \u001b[1;36m0\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n",
       "\u001b[1;32mD:\\runSIT\\..\\pipeline\\postprocessing\\pack.py\u001b[0m in \u001b[0;36mpack\u001b[1;34m(session_path)\u001b[0m\n\u001b[0;32m    165\u001b[0m         \u001b[1;31m# head direction\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m    166\u001b[0m         \u001b[0mtemp_tl\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0mnp\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mcolumn_stack\u001b[0m\u001b[1;33m(\u001b[0m\u001b[1;33m[\u001b[0m\u001b[0mpos_at_freq\u001b[0m\u001b[1;33m[\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m,\u001b[0m \u001b[1;36m0\u001b[0m\u001b[1;33m]\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mx_smooth\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0my_smooth\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mspeed\u001b[0m\u001b[1;33m]\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m--> 167\u001b[1;33m         \u001b[0mhd\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0mhead_direction\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mtemp_tl\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m    168\u001b[0m \u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m    169\u001b[0m         \u001b[1;31m# trial numbers\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n",
       "\u001b[1;32mD:\\runSIT\\..\\pipeline\\postprocessing\\head_direction.py\u001b[0m in \u001b[0;36mhead_direction\u001b[1;34m(tl, hd_update_speed)\u001b[0m\n\u001b[0;32m     22\u001b[0m     \u001b[0mcrit\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0mnp\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mwhere\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mnp\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mdiff\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0midle_idxs\u001b[0m\u001b[1;33m)\u001b[0m \u001b[1;33m>\u001b[0m \u001b[1;36m1\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m[\u001b[0m\u001b[1;36m0\u001b[0m\u001b[1;33m]\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m     23\u001b[0m \u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m---> 24\u001b[1;33m     \u001b[0midle_periods\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mappend\u001b[0m\u001b[1;33m(\u001b[0m \u001b[1;33m(\u001b[0m\u001b[0midle_idxs\u001b[0m\u001b[1;33m[\u001b[0m\u001b[1;36m0\u001b[0m\u001b[1;33m]\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0midle_idxs\u001b[0m\u001b[1;33m[\u001b[0m\u001b[0mcrit\u001b[0m\u001b[1;33m[\u001b[0m\u001b[1;36m0\u001b[0m\u001b[1;33m]\u001b[0m\u001b[1;33m]\u001b[0m\u001b[1;33m)\u001b[0m \u001b[1;33m)\u001b[0m  \u001b[1;31m# first idle period\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m     25\u001b[0m     \u001b[1;32mfor\u001b[0m \u001b[0mi\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mpoint\u001b[0m \u001b[1;32min\u001b[0m \u001b[0menumerate\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mcrit\u001b[0m\u001b[1;33m[\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m-\u001b[0m\u001b[1;36m1\u001b[0m\u001b[1;33m]\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m     26\u001b[0m         \u001b[0midx_start\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0midle_idxs\u001b[0m\u001b[1;33m[\u001b[0m\u001b[0mcrit\u001b[0m\u001b[1;33m[\u001b[0m\u001b[0mi\u001b[0m\u001b[1;33m]\u001b[0m \u001b[1;33m+\u001b[0m \u001b[1;36m1\u001b[0m\u001b[1;33m]\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n",
       "\u001b[1;31mIndexError\u001b[0m: index 0 is out of bounds for axis 0 with size 0"
@@ -702,7 +714,9 @@
    "execution_count": null,
    "metadata": {},
    "outputs": [],
-   "source": []
+   "source": [
+    "import this\n"
+   ]
   },
   {
    "cell_type": "code",