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deeplabcut example

asobolev il y a 1 an
Parent
commit
98fed08594

Fichier diff supprimé car celui-ci est trop grand
+ 48 - 20
analysis/performance - positional.ipynb


Fichier diff supprimé car celui-ci est trop grand
+ 28 - 26
analysis/spatial - allocentric.ipynb


Fichier diff supprimé car celui-ci est trop grand
+ 13 - 10
analysis/spatial - egocentric.ipynb


Fichier diff supprimé car celui-ci est trop grand
+ 28 - 19
analysis/state separation.ipynb


Fichier diff supprimé car celui-ci est trop grand
+ 119 - 99
analysis/timeline.ipynb


Fichier diff supprimé car celui-ci est trop grand
+ 940 - 0
postprocessing/deeplabcut.ipynb


+ 8 - 9
postprocessing/execute.ipynb

@@ -2,7 +2,7 @@
  "cells": [
   {
    "cell_type": "code",
-   "execution_count": 10,
+   "execution_count": 5,
    "id": "c37dce82",
    "metadata": {
     "scrolled": true
@@ -39,7 +39,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 11,
+   "execution_count": 6,
    "id": "a8ea2991",
    "metadata": {},
    "outputs": [
@@ -75,7 +75,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 13,
+   "execution_count": 8,
    "id": "3891b792",
    "metadata": {},
    "outputs": [],
@@ -95,15 +95,15 @@
     "#sessions = [filebase]\n",
     "sessions = processed_008228 + processed_008229\n",
     "sessions = [\n",
-    "    \"008229_hippoSIT_2022-05-13_09-48-00\",\n",
-    "    \"008229_hippoSIT_2022-05-18_14-36-18\"\n",
+    "'008229_hippoSIT_2022-05-31_11-00-02',\n",
+    "#'008229_hippoSIT_2022-05-31_16-38-23'\n",
     "]\n",
     "\n",
     "# FIXME move occupancy outside units\n",
     "# FIXME Move 'processed' into H5NAMES\n",
     "\n",
     "steps = {\n",
-    "    'write_trajectory': True,       # Packing to HDF5 (trajectory, trials, sound events)\n",
+    "    'write_trajectory': False,       # Packing to HDF5 (trajectory, trials, sound events)\n",
     "    'write_units': True,            # Loading units (spikes times, trajectory indices, instantaneous rate)\n",
     "    'write_spiking_metrics': True,  # Spiking metrics (mean firing rate, ISI metrics etc.)\n",
     "    'write_spatial_metrics': True,  # Spatial metrics\n",
@@ -113,7 +113,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 14,
+   "execution_count": 9,
    "id": "24cd2f6e",
    "metadata": {},
    "outputs": [
@@ -121,8 +121,7 @@
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "session 008229_hippoSIT_2022-05-13_09-48-00 done\n",
-      "session 008229_hippoSIT_2022-05-18_14-36-18 done\n"
+      "session 008229_hippoSIT_2022-05-31_11-00-02 done\n"
      ]
     }
    ],

+ 16 - 115
postprocessing/video.ipynb

@@ -2,7 +2,7 @@
  "cells": [
   {
    "cell_type": "code",
-   "execution_count": 11,
+   "execution_count": 2,
    "id": "5a3bd93e",
    "metadata": {},
    "outputs": [],
@@ -12,7 +12,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 12,
+   "execution_count": 3,
    "id": "94180e22",
    "metadata": {},
    "outputs": [
@@ -48,7 +48,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 13,
+   "execution_count": 4,
    "id": "f96839aa",
    "metadata": {},
    "outputs": [],
@@ -60,12 +60,17 @@
     "    [\"pellet_search\", \"008229_hippoSIT_2022-05-20_15-54-39\", 1193, 1218],\n",
     "    [\"pellet_search\", \"008229_hippoSIT_2022-05-20_15-54-39\", 560, 575],\n",
     "    [\"grooming\", \"008229_hippoSIT_2022-05-20_15-54-39\", 1252, 1264]\n",
+    "]\n",
+    "\n",
+    "to_cut = [\n",
+    "    ['DLC-test1', \"008229_hippoSIT_2022-05-17_21-44-43\", 0, 600],\n",
+    "    ['DLC-test2', \"008229_hippoSIT_2022-05-20_15-54-39\", 0, 600],\n",
     "]"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 10,
+   "execution_count": 5,
    "id": "6f0c28f1",
    "metadata": {},
    "outputs": [
@@ -92,63 +97,15 @@
       "    encoder         : Lavf58.45.100\n",
       "  Duration: 00:39:59.90, start: 0.000000, bitrate: 3019 kb/s\n",
       "    Stream #0:0: Video: mpeg4 (Simple Profile) (XVID / 0x44495658), yuv420p, 1024x768 [SAR 1:1 DAR 4:3], 3015 kb/s, 20 fps, 20 tbr, 20 tbn, 20 tbc\n",
-      "File '/home/sobolev/nevermind/Andrey/analysis/PPC/active_listening_008229_hippoSIT_2022-05-17_21-44-43_120_145.avi' already exists. Overwrite ? [y/N] Not overwriting - exiting\n",
-      "ffmpeg version 4.2.4-1ubuntu0.1 Copyright (c) 2000-2020 the FFmpeg developers\n",
-      "  built with gcc 9 (Ubuntu 9.3.0-10ubuntu2)\n",
-      "  configuration: --prefix=/usr --extra-version=1ubuntu0.1 --toolchain=hardened --libdir=/usr/lib/x86_64-linux-gnu --incdir=/usr/include/x86_64-linux-gnu --arch=amd64 --enable-gpl --disable-stripping --enable-avresample --disable-filter=resample --enable-avisynth --enable-gnutls --enable-ladspa --enable-libaom --enable-libass --enable-libbluray --enable-libbs2b --enable-libcaca --enable-libcdio --enable-libcodec2 --enable-libflite --enable-libfontconfig --enable-libfreetype --enable-libfribidi --enable-libgme --enable-libgsm --enable-libjack --enable-libmp3lame --enable-libmysofa --enable-libopenjpeg --enable-libopenmpt --enable-libopus --enable-libpulse --enable-librsvg --enable-librubberband --enable-libshine --enable-libsnappy --enable-libsoxr --enable-libspeex --enable-libssh --enable-libtheora --enable-libtwolame --enable-libvidstab --enable-libvorbis --enable-libvpx --enable-libwavpack --enable-libwebp --enable-libx265 --enable-libxml2 --enable-libxvid --enable-libzmq --enable-libzvbi --enable-lv2 --enable-omx --enable-openal --enable-opencl --enable-opengl --enable-sdl2 --enable-libdc1394 --enable-libdrm --enable-libiec61883 --enable-nvenc --enable-chromaprint --enable-frei0r --enable-libx264 --enable-shared\n",
-      "  WARNING: library configuration mismatch\n",
-      "  avcodec     configuration: --prefix=/usr --extra-version=1ubuntu0.1 --toolchain=hardened --libdir=/usr/lib/x86_64-linux-gnu --incdir=/usr/include/x86_64-linux-gnu --arch=amd64 --enable-gpl --disable-stripping --enable-avresample --disable-filter=resample --enable-avisynth --enable-gnutls --enable-ladspa --enable-libaom --enable-libass --enable-libbluray --enable-libbs2b --enable-libcaca --enable-libcdio --enable-libcodec2 --enable-libflite --enable-libfontconfig --enable-libfreetype --enable-libfribidi --enable-libgme --enable-libgsm --enable-libjack --enable-libmp3lame --enable-libmysofa --enable-libopenjpeg --enable-libopenmpt --enable-libopus --enable-libpulse --enable-librsvg --enable-librubberband --enable-libshine --enable-libsnappy --enable-libsoxr --enable-libspeex --enable-libssh --enable-libtheora --enable-libtwolame --enable-libvidstab --enable-libvorbis --enable-libvpx --enable-libwavpack --enable-libwebp --enable-libx265 --enable-libxml2 --enable-libxvid --enable-libzmq --enable-libzvbi --enable-lv2 --enable-omx --enable-openal --enable-opencl --enable-opengl --enable-sdl2 --enable-libdc1394 --enable-libdrm --enable-libiec61883 --enable-nvenc --enable-chromaprint --enable-frei0r --enable-libx264 --enable-shared --enable-version3 --disable-doc --disable-programs --enable-libaribb24 --enable-liblensfun --enable-libopencore_amrnb --enable-libopencore_amrwb --enable-libtesseract --enable-libvo_amrwbenc\n",
-      "  libavutil      56. 31.100 / 56. 31.100\n",
-      "  libavcodec     58. 54.100 / 58. 54.100\n",
-      "  libavformat    58. 29.100 / 58. 29.100\n",
-      "  libavdevice    58.  8.100 / 58.  8.100\n",
-      "  libavfilter     7. 57.100 /  7. 57.100\n",
-      "  libavresample   4.  0.  0 /  4.  0.  0\n",
-      "  libswscale      5.  5.100 /  5.  5.100\n",
-      "  libswresample   3.  5.100 /  3.  5.100\n",
-      "  libpostproc    55.  5.100 / 55.  5.100\n",
-      "Input #0, avi, from '/home/sobolev/nevermind/Andrey/data/008229/008229_hippoSIT_2022-05-16_20-36-44/video.avi':\n",
-      "  Metadata:\n",
-      "    encoder         : Lavf58.45.100\n",
-      "  Duration: 00:39:59.90, start: 0.000000, bitrate: 2993 kb/s\n",
-      "    Stream #0:0: Video: mpeg4 (Simple Profile) (XVID / 0x44495658), yuv420p, 1024x768 [SAR 1:1 DAR 4:3], 2989 kb/s, 20 fps, 20 tbr, 20 tbn, 20 tbc\n",
-      "Output #0, avi, to '/home/sobolev/nevermind/Andrey/analysis/PPC/escape_searching_jumps_008229_hippoSIT_2022-05-16_20-36-44_330_343.avi':\n",
+      "Output #0, avi, to '/home/sobolev/nevermind/Andrey/analysis/PPC/DLC-test1_008229_hippoSIT_2022-05-17_21-44-43_0_600.avi':\n",
       "  Metadata:\n",
       "    ISFT            : Lavf58.29.100\n",
-      "    Stream #0:0: Video: mpeg4 (Simple Profile) (XVID / 0x44495658), yuv420p, 1024x768 [SAR 1:1 DAR 4:3], q=2-31, 2989 kb/s, 20 fps, 20 tbr, 20 tbn, 20 tbc\n",
+      "    Stream #0:0: Video: mpeg4 (Simple Profile) (XVID / 0x44495658), yuv420p, 1024x768 [SAR 1:1 DAR 4:3], q=2-31, 3015 kb/s, 20 fps, 20 tbr, 20 tbn, 20 tbc\n",
       "Stream mapping:\n",
       "  Stream #0:0 -> #0:0 (copy)\n",
       "Press [q] to stop, [?] for help\n",
-      "frame=  260 fps=0.0 q=-1.0 Lsize=    6074kB time=00:00:13.00 bitrate=3827.6kbits/s speed= 126x    \n",
-      "video:6062kB audio:0kB subtitle:0kB other streams:0kB global headers:0kB muxing overhead: 0.196274%\n",
-      "ffmpeg version 4.2.4-1ubuntu0.1 Copyright (c) 2000-2020 the FFmpeg developers\n",
-      "  built with gcc 9 (Ubuntu 9.3.0-10ubuntu2)\n",
-      "  configuration: --prefix=/usr --extra-version=1ubuntu0.1 --toolchain=hardened --libdir=/usr/lib/x86_64-linux-gnu --incdir=/usr/include/x86_64-linux-gnu --arch=amd64 --enable-gpl --disable-stripping --enable-avresample --disable-filter=resample --enable-avisynth --enable-gnutls --enable-ladspa --enable-libaom --enable-libass --enable-libbluray --enable-libbs2b --enable-libcaca --enable-libcdio --enable-libcodec2 --enable-libflite --enable-libfontconfig --enable-libfreetype --enable-libfribidi --enable-libgme --enable-libgsm --enable-libjack --enable-libmp3lame --enable-libmysofa --enable-libopenjpeg --enable-libopenmpt --enable-libopus --enable-libpulse --enable-librsvg --enable-librubberband --enable-libshine --enable-libsnappy --enable-libsoxr --enable-libspeex --enable-libssh --enable-libtheora --enable-libtwolame --enable-libvidstab --enable-libvorbis --enable-libvpx --enable-libwavpack --enable-libwebp --enable-libx265 --enable-libxml2 --enable-libxvid --enable-libzmq --enable-libzvbi --enable-lv2 --enable-omx --enable-openal --enable-opencl --enable-opengl --enable-sdl2 --enable-libdc1394 --enable-libdrm --enable-libiec61883 --enable-nvenc --enable-chromaprint --enable-frei0r --enable-libx264 --enable-shared\n",
-      "  WARNING: library configuration mismatch\n",
-      "  avcodec     configuration: --prefix=/usr --extra-version=1ubuntu0.1 --toolchain=hardened --libdir=/usr/lib/x86_64-linux-gnu --incdir=/usr/include/x86_64-linux-gnu --arch=amd64 --enable-gpl --disable-stripping --enable-avresample --disable-filter=resample --enable-avisynth --enable-gnutls --enable-ladspa --enable-libaom --enable-libass --enable-libbluray --enable-libbs2b --enable-libcaca --enable-libcdio --enable-libcodec2 --enable-libflite --enable-libfontconfig --enable-libfreetype --enable-libfribidi --enable-libgme --enable-libgsm --enable-libjack --enable-libmp3lame --enable-libmysofa --enable-libopenjpeg --enable-libopenmpt --enable-libopus --enable-libpulse --enable-librsvg --enable-librubberband --enable-libshine --enable-libsnappy --enable-libsoxr --enable-libspeex --enable-libssh --enable-libtheora --enable-libtwolame --enable-libvidstab --enable-libvorbis --enable-libvpx --enable-libwavpack --enable-libwebp --enable-libx265 --enable-libxml2 --enable-libxvid --enable-libzmq --enable-libzvbi --enable-lv2 --enable-omx --enable-openal --enable-opencl --enable-opengl --enable-sdl2 --enable-libdc1394 --enable-libdrm --enable-libiec61883 --enable-nvenc --enable-chromaprint --enable-frei0r --enable-libx264 --enable-shared --enable-version3 --disable-doc --disable-programs --enable-libaribb24 --enable-liblensfun --enable-libopencore_amrnb --enable-libopencore_amrwb --enable-libtesseract --enable-libvo_amrwbenc\n",
-      "  libavutil      56. 31.100 / 56. 31.100\n",
-      "  libavcodec     58. 54.100 / 58. 54.100\n",
-      "  libavformat    58. 29.100 / 58. 29.100\n",
-      "  libavdevice    58.  8.100 / 58.  8.100\n",
-      "  libavfilter     7. 57.100 /  7. 57.100\n",
-      "  libavresample   4.  0.  0 /  4.  0.  0\n",
-      "  libswscale      5.  5.100 /  5.  5.100\n",
-      "  libswresample   3.  5.100 /  3.  5.100\n",
-      "  libpostproc    55.  5.100 / 55.  5.100\n",
-      "Input #0, avi, from '/home/sobolev/nevermind/Andrey/data/008229/008229_hippoSIT_2022-05-16_20-36-44/video.avi':\n",
-      "  Metadata:\n",
-      "    encoder         : Lavf58.45.100\n",
-      "  Duration: 00:39:59.90, start: 0.000000, bitrate: 2993 kb/s\n",
-      "    Stream #0:0: Video: mpeg4 (Simple Profile) (XVID / 0x44495658), yuv420p, 1024x768 [SAR 1:1 DAR 4:3], 2989 kb/s, 20 fps, 20 tbr, 20 tbn, 20 tbc\n",
-      "Output #0, avi, to '/home/sobolev/nevermind/Andrey/analysis/PPC/escape_searching_jumps_008229_hippoSIT_2022-05-16_20-36-44_60_75.avi':\n",
-      "  Metadata:\n",
-      "    ISFT            : Lavf58.29.100\n",
-      "    Stream #0:0: Video: mpeg4 (Simple Profile) (XVID / 0x44495658), yuv420p, 1024x768 [SAR 1:1 DAR 4:3], q=2-31, 2989 kb/s, 20 fps, 20 tbr, 20 tbn, 20 tbc\n",
-      "Stream mapping:\n",
-      "  Stream #0:0 -> #0:0 (copy)\n",
-      "Press [q] to stop, [?] for help\n",
-      "frame=  300 fps=0.0 q=-1.0 Lsize=    7187kB time=00:00:15.00 bitrate=3925.3kbits/s speed= 121x    \n",
-      "video:7175kB audio:0kB subtitle:0kB other streams:0kB global headers:0kB muxing overhead: 0.179222%\n",
+      "frame=12000 fps=2393 q=-1.0 Lsize=  272526kB time=00:10:00.00 bitrate=3720.9kbits/s speed= 120x    \n",
+      "video:272233kB audio:0kB subtitle:0kB other streams:0kB global headers:0kB muxing overhead: 0.107543%\n",
       "ffmpeg version 4.2.4-1ubuntu0.1 Copyright (c) 2000-2020 the FFmpeg developers\n",
       "  built with gcc 9 (Ubuntu 9.3.0-10ubuntu2)\n",
       "  configuration: --prefix=/usr --extra-version=1ubuntu0.1 --toolchain=hardened --libdir=/usr/lib/x86_64-linux-gnu --incdir=/usr/include/x86_64-linux-gnu --arch=amd64 --enable-gpl --disable-stripping --enable-avresample --disable-filter=resample --enable-avisynth --enable-gnutls --enable-ladspa --enable-libaom --enable-libass --enable-libbluray --enable-libbs2b --enable-libcaca --enable-libcdio --enable-libcodec2 --enable-libflite --enable-libfontconfig --enable-libfreetype --enable-libfribidi --enable-libgme --enable-libgsm --enable-libjack --enable-libmp3lame --enable-libmysofa --enable-libopenjpeg --enable-libopenmpt --enable-libopus --enable-libpulse --enable-librsvg --enable-librubberband --enable-libshine --enable-libsnappy --enable-libsoxr --enable-libspeex --enable-libssh --enable-libtheora --enable-libtwolame --enable-libvidstab --enable-libvorbis --enable-libvpx --enable-libwavpack --enable-libwebp --enable-libx265 --enable-libxml2 --enable-libxvid --enable-libzmq --enable-libzvbi --enable-lv2 --enable-omx --enable-openal --enable-opencl --enable-opengl --enable-sdl2 --enable-libdc1394 --enable-libdrm --enable-libiec61883 --enable-nvenc --enable-chromaprint --enable-frei0r --enable-libx264 --enable-shared\n",
@@ -168,7 +125,7 @@
       "    encoder         : Lavf58.45.100\n",
       "  Duration: 00:39:59.70, start: 0.000000, bitrate: 2944 kb/s\n",
       "    Stream #0:0: Video: mpeg4 (Simple Profile) (XVID / 0x44495658), yuv420p, 1024x768 [SAR 1:1 DAR 4:3], 2940 kb/s, 20 fps, 20 tbr, 20 tbn, 20 tbc\n",
-      "Output #0, avi, to '/home/sobolev/nevermind/Andrey/analysis/PPC/pellet_search_008229_hippoSIT_2022-05-20_15-54-39_1193_1218.avi':\n",
+      "Output #0, avi, to '/home/sobolev/nevermind/Andrey/analysis/PPC/DLC-test2_008229_hippoSIT_2022-05-20_15-54-39_0_600.avi':\n",
       "  Metadata:\n",
       "    ISFT            : Lavf58.29.100\n",
       "    Stream #0:0: Video: mpeg4 (Simple Profile) (XVID / 0x44495658), yuv420p, 1024x768 [SAR 1:1 DAR 4:3], q=2-31, 2940 kb/s, 20 fps, 20 tbr, 20 tbn, 20 tbc\n",
@@ -181,64 +138,8 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "frame=  504 fps=0.0 q=-1.0 Lsize=    6886kB time=00:00:25.00 bitrate=2256.5kbits/s speed= 205x    \n",
-      "video:6868kB audio:0kB subtitle:0kB other streams:0kB global headers:0kB muxing overhead: 0.258359%\n",
-      "ffmpeg version 4.2.4-1ubuntu0.1 Copyright (c) 2000-2020 the FFmpeg developers\n",
-      "  built with gcc 9 (Ubuntu 9.3.0-10ubuntu2)\n",
-      "  configuration: --prefix=/usr --extra-version=1ubuntu0.1 --toolchain=hardened --libdir=/usr/lib/x86_64-linux-gnu --incdir=/usr/include/x86_64-linux-gnu --arch=amd64 --enable-gpl --disable-stripping --enable-avresample --disable-filter=resample --enable-avisynth --enable-gnutls --enable-ladspa --enable-libaom --enable-libass --enable-libbluray --enable-libbs2b --enable-libcaca --enable-libcdio --enable-libcodec2 --enable-libflite --enable-libfontconfig --enable-libfreetype --enable-libfribidi --enable-libgme --enable-libgsm --enable-libjack --enable-libmp3lame --enable-libmysofa --enable-libopenjpeg --enable-libopenmpt --enable-libopus --enable-libpulse --enable-librsvg --enable-librubberband --enable-libshine --enable-libsnappy --enable-libsoxr --enable-libspeex --enable-libssh --enable-libtheora --enable-libtwolame --enable-libvidstab --enable-libvorbis --enable-libvpx --enable-libwavpack --enable-libwebp --enable-libx265 --enable-libxml2 --enable-libxvid --enable-libzmq --enable-libzvbi --enable-lv2 --enable-omx --enable-openal --enable-opencl --enable-opengl --enable-sdl2 --enable-libdc1394 --enable-libdrm --enable-libiec61883 --enable-nvenc --enable-chromaprint --enable-frei0r --enable-libx264 --enable-shared\n",
-      "  WARNING: library configuration mismatch\n",
-      "  avcodec     configuration: --prefix=/usr --extra-version=1ubuntu0.1 --toolchain=hardened --libdir=/usr/lib/x86_64-linux-gnu --incdir=/usr/include/x86_64-linux-gnu --arch=amd64 --enable-gpl --disable-stripping --enable-avresample --disable-filter=resample --enable-avisynth --enable-gnutls --enable-ladspa --enable-libaom --enable-libass --enable-libbluray --enable-libbs2b --enable-libcaca --enable-libcdio --enable-libcodec2 --enable-libflite --enable-libfontconfig --enable-libfreetype --enable-libfribidi --enable-libgme --enable-libgsm --enable-libjack --enable-libmp3lame --enable-libmysofa --enable-libopenjpeg --enable-libopenmpt --enable-libopus --enable-libpulse --enable-librsvg --enable-librubberband --enable-libshine --enable-libsnappy --enable-libsoxr --enable-libspeex --enable-libssh --enable-libtheora --enable-libtwolame --enable-libvidstab --enable-libvorbis --enable-libvpx --enable-libwavpack --enable-libwebp --enable-libx265 --enable-libxml2 --enable-libxvid --enable-libzmq --enable-libzvbi --enable-lv2 --enable-omx --enable-openal --enable-opencl --enable-opengl --enable-sdl2 --enable-libdc1394 --enable-libdrm --enable-libiec61883 --enable-nvenc --enable-chromaprint --enable-frei0r --enable-libx264 --enable-shared --enable-version3 --disable-doc --disable-programs --enable-libaribb24 --enable-liblensfun --enable-libopencore_amrnb --enable-libopencore_amrwb --enable-libtesseract --enable-libvo_amrwbenc\n",
-      "  libavutil      56. 31.100 / 56. 31.100\n",
-      "  libavcodec     58. 54.100 / 58. 54.100\n",
-      "  libavformat    58. 29.100 / 58. 29.100\n",
-      "  libavdevice    58.  8.100 / 58.  8.100\n",
-      "  libavfilter     7. 57.100 /  7. 57.100\n",
-      "  libavresample   4.  0.  0 /  4.  0.  0\n",
-      "  libswscale      5.  5.100 /  5.  5.100\n",
-      "  libswresample   3.  5.100 /  3.  5.100\n",
-      "  libpostproc    55.  5.100 / 55.  5.100\n",
-      "Input #0, avi, from '/home/sobolev/nevermind/Andrey/data/008229/008229_hippoSIT_2022-05-20_15-54-39/video.avi':\n",
-      "  Metadata:\n",
-      "    encoder         : Lavf58.45.100\n",
-      "  Duration: 00:39:59.70, start: 0.000000, bitrate: 2944 kb/s\n",
-      "    Stream #0:0: Video: mpeg4 (Simple Profile) (XVID / 0x44495658), yuv420p, 1024x768 [SAR 1:1 DAR 4:3], 2940 kb/s, 20 fps, 20 tbr, 20 tbn, 20 tbc\n",
-      "Output #0, avi, to '/home/sobolev/nevermind/Andrey/analysis/PPC/pellet_search_008229_hippoSIT_2022-05-20_15-54-39_560_575.avi':\n",
-      "  Metadata:\n",
-      "    ISFT            : Lavf58.29.100\n",
-      "    Stream #0:0: Video: mpeg4 (Simple Profile) (XVID / 0x44495658), yuv420p, 1024x768 [SAR 1:1 DAR 4:3], q=2-31, 2940 kb/s, 20 fps, 20 tbr, 20 tbn, 20 tbc\n",
-      "Stream mapping:\n",
-      "  Stream #0:0 -> #0:0 (copy)\n",
-      "Press [q] to stop, [?] for help\n",
-      "frame=  304 fps=0.0 q=-1.0 Lsize=    6843kB time=00:00:15.00 bitrate=3737.0kbits/s speed= 117x    \n",
-      "video:6830kB audio:0kB subtitle:0kB other streams:0kB global headers:0kB muxing overhead: 0.189575%\n",
-      "ffmpeg version 4.2.4-1ubuntu0.1 Copyright (c) 2000-2020 the FFmpeg developers\n",
-      "  built with gcc 9 (Ubuntu 9.3.0-10ubuntu2)\n",
-      "  configuration: --prefix=/usr --extra-version=1ubuntu0.1 --toolchain=hardened --libdir=/usr/lib/x86_64-linux-gnu --incdir=/usr/include/x86_64-linux-gnu --arch=amd64 --enable-gpl --disable-stripping --enable-avresample --disable-filter=resample --enable-avisynth --enable-gnutls --enable-ladspa --enable-libaom --enable-libass --enable-libbluray --enable-libbs2b --enable-libcaca --enable-libcdio --enable-libcodec2 --enable-libflite --enable-libfontconfig --enable-libfreetype --enable-libfribidi --enable-libgme --enable-libgsm --enable-libjack --enable-libmp3lame --enable-libmysofa --enable-libopenjpeg --enable-libopenmpt --enable-libopus --enable-libpulse --enable-librsvg --enable-librubberband --enable-libshine --enable-libsnappy --enable-libsoxr --enable-libspeex --enable-libssh --enable-libtheora --enable-libtwolame --enable-libvidstab --enable-libvorbis --enable-libvpx --enable-libwavpack --enable-libwebp --enable-libx265 --enable-libxml2 --enable-libxvid --enable-libzmq --enable-libzvbi --enable-lv2 --enable-omx --enable-openal --enable-opencl --enable-opengl --enable-sdl2 --enable-libdc1394 --enable-libdrm --enable-libiec61883 --enable-nvenc --enable-chromaprint --enable-frei0r --enable-libx264 --enable-shared\n",
-      "  WARNING: library configuration mismatch\n",
-      "  avcodec     configuration: --prefix=/usr --extra-version=1ubuntu0.1 --toolchain=hardened --libdir=/usr/lib/x86_64-linux-gnu --incdir=/usr/include/x86_64-linux-gnu --arch=amd64 --enable-gpl --disable-stripping --enable-avresample --disable-filter=resample --enable-avisynth --enable-gnutls --enable-ladspa --enable-libaom --enable-libass --enable-libbluray --enable-libbs2b --enable-libcaca --enable-libcdio --enable-libcodec2 --enable-libflite --enable-libfontconfig --enable-libfreetype --enable-libfribidi --enable-libgme --enable-libgsm --enable-libjack --enable-libmp3lame --enable-libmysofa --enable-libopenjpeg --enable-libopenmpt --enable-libopus --enable-libpulse --enable-librsvg --enable-librubberband --enable-libshine --enable-libsnappy --enable-libsoxr --enable-libspeex --enable-libssh --enable-libtheora --enable-libtwolame --enable-libvidstab --enable-libvorbis --enable-libvpx --enable-libwavpack --enable-libwebp --enable-libx265 --enable-libxml2 --enable-libxvid --enable-libzmq --enable-libzvbi --enable-lv2 --enable-omx --enable-openal --enable-opencl --enable-opengl --enable-sdl2 --enable-libdc1394 --enable-libdrm --enable-libiec61883 --enable-nvenc --enable-chromaprint --enable-frei0r --enable-libx264 --enable-shared --enable-version3 --disable-doc --disable-programs --enable-libaribb24 --enable-liblensfun --enable-libopencore_amrnb --enable-libopencore_amrwb --enable-libtesseract --enable-libvo_amrwbenc\n",
-      "  libavutil      56. 31.100 / 56. 31.100\n",
-      "  libavcodec     58. 54.100 / 58. 54.100\n",
-      "  libavformat    58. 29.100 / 58. 29.100\n",
-      "  libavdevice    58.  8.100 / 58.  8.100\n",
-      "  libavfilter     7. 57.100 /  7. 57.100\n",
-      "  libavresample   4.  0.  0 /  4.  0.  0\n",
-      "  libswscale      5.  5.100 /  5.  5.100\n",
-      "  libswresample   3.  5.100 /  3.  5.100\n",
-      "  libpostproc    55.  5.100 / 55.  5.100\n",
-      "Input #0, avi, from '/home/sobolev/nevermind/Andrey/data/008229/008229_hippoSIT_2022-05-20_15-54-39/video.avi':\n",
-      "  Metadata:\n",
-      "    encoder         : Lavf58.45.100\n",
-      "  Duration: 00:39:59.70, start: 0.000000, bitrate: 2944 kb/s\n",
-      "    Stream #0:0: Video: mpeg4 (Simple Profile) (XVID / 0x44495658), yuv420p, 1024x768 [SAR 1:1 DAR 4:3], 2940 kb/s, 20 fps, 20 tbr, 20 tbn, 20 tbc\n",
-      "Output #0, avi, to '/home/sobolev/nevermind/Andrey/analysis/PPC/grooming_008229_hippoSIT_2022-05-20_15-54-39_1252_1264.avi':\n",
-      "  Metadata:\n",
-      "    ISFT            : Lavf58.29.100\n",
-      "    Stream #0:0: Video: mpeg4 (Simple Profile) (XVID / 0x44495658), yuv420p, 1024x768 [SAR 1:1 DAR 4:3], q=2-31, 2940 kb/s, 20 fps, 20 tbr, 20 tbn, 20 tbc\n",
-      "Stream mapping:\n",
-      "  Stream #0:0 -> #0:0 (copy)\n",
-      "Press [q] to stop, [?] for help\n",
-      "frame=  248 fps=0.0 q=-1.0 Lsize=    3480kB time=00:00:12.00 bitrate=2375.5kbits/s speed= 190x    \n",
-      "video:3468kB audio:0kB subtitle:0kB other streams:0kB global headers:0kB muxing overhead: 0.334269%\n"
+      "frame=12000 fps=2525 q=-1.0 Lsize=  263588kB time=00:10:00.00 bitrate=3598.9kbits/s speed= 126x    \n",
+      "video:263295kB audio:0kB subtitle:0kB other streams:0kB global headers:0kB muxing overhead: 0.111215%\n"
      ]
     }
    ],

Fichier diff supprimé car celui-ci est trop grand
+ 7331 - 12547
sorting/ss-neurosuite.ipynb