epilepsy-potassium-calculation/README.md

About

Model of Ictal and Interictal discharges during epilepsy. Please see this article for details.

Install

You need Python of version 3.6 or higher. Also I highly recommend to use environments for work. Anaconda is a good choice. The required dependencies are: matplotlib, scipy, numpy, numba, pyyaml.

pip install matplotlib scipy numpy numba pyyaml

Run

• Adjust params as you need in params_0d.py and params_2d.py.
• Execute python epileptor/model_2d_full.py. It gives 3 files as the result in results dir. These files have names: <YYYY-mm-dd_HH.MM>_plain.npz, <YYYY-mm-dd_HH.MM>_points.npz, <YYYY-mm-dd_HH.MM>_params.yml correspondingly, where <YYYY-mm-dd_HH.MM> is the date/time when your execution ended.
• To display results execute python -d results/<YYYY-mm-dd_HH.MM> epileptor/display_2D.py.
• Look up the display results in media directory. They all have <YYYY-mm-dd_HH.MM> part in common.

Example Your execution successfully ended. You have 3 results: 2019-01-27_17.14_plain.npz, 2019-01-27_17.14_points.npz, 2019-01-27_17.14_params.yml. <YYYY-mm-dd_HH.MM> is represented as 2019-01-27_17.14.