ankursinha/Human-L2-3-Cortical-Microcircuit: NeuroML conversions of the Yao et al 2022 Human L2/3 cortical microcircuit: Yao, H. K. et al. Reduced inhibition in depression impairs stimulus processing in human cortical microcircuits. Cell Rep. 38, (2022). Non git-annex files can also be obtained from https://github.com/sanjayankur31/Human-L2-3-Cortical-Microcircuit/ @ feat/neuroml

Ankur Sinha (Ankur Sinha Gmail) 8f08c51568 feat: check in sim replicated data		2 weeks ago
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Readme.md	8f08c51568 feat: check in sim replicated data	2 weeks ago
SPIKES_Seed1234.npy	8f08c51568 feat: check in sim replicated data	2 weeks ago
SPIKES_Seed1234.pickle	8f08c51568 feat: check in sim replicated data	2 weeks ago
cell_positions_and_rotations.h5	8f08c51568 feat: check in sim replicated data	2 weeks ago
extract-spikes.py	8f08c51568 feat: check in sim replicated data	2 weeks ago
pop-0.txt	8f08c51568 feat: check in sim replicated data	2 weeks ago
pop-1.txt	8f08c51568 feat: check in sim replicated data	2 weeks ago
pop-2.txt	8f08c51568 feat: check in sim replicated data	2 weeks ago
pop-3.txt	8f08c51568 feat: check in sim replicated data	2 weeks ago
pop-spikes.txt	8f08c51568 feat: check in sim replicated data	2 weeks ago
raster_1234.png	8f08c51568 feat: check in sim replicated data	2 weeks ago
rates_1234.png	8f08c51568 feat: check in sim replicated data	2 weeks ago
spikerates_Seed1234.txt	8f08c51568 feat: check in sim replicated data	2 weeks ago
spiketimes_1234.png	8f08c51568 feat: check in sim replicated data	2 weeks ago

This folder contains data generated for a run of the code. The txt files include spikes that have been extracted from the pickle using the extract.py script. One can visualise the spikes using tools such as pynml-plotspikes from the PyNeuroML Python package.

Readme.md