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  1. *************
    2. 

  2. Release Notes
    3. 

  3. *************
    4. 

  4. 

  5. Elephant 0.6.0 release notes
    6. 

  6. ============================
    7. 

  7. October 12th 2018
    8. 

  8. 

  9. New functions
    10. 

  10. -------------
    11. 

  11. * `cell_assembly_detection` module
    12. 

  12.     * New function to detect higher-order correlation structures such as patterns in parallel spike trains based on Russo et al, 2017.
    13. 

  13. *  **wavelet_transform()** function in `signal_prosessing.py` module
    14. 

  14.     * Function for computing wavelet transform of a given time series based on Le van Quyen et al. (2001)
    15. 

  15. 

  16. Other changes
    17. 

  17. -------------
    18. 

  18. * Switched to multiple `requirements.txt` files which are directly read into the `setup.py`
    19. 

  19. * `instantaneous_rate()` accepts now list of spiketrains
    20. 

  20. * Minor bug fixes  
    21. 

  21. 

  22. 

  23. Elephant 0.5.0 release notes
    24. 

  24. ============================
    25. 

  25. April 4nd 2018
    26. 

  26. 

  27. New functions
    28. 

  28. -------------
    29. 

  29. * `change_point_detection` module:
    30. 

  30.     * New function to detect changes in the firing rate
    31. 

  31. * `spike_train_correlation` module:
    32. 

  32.     * New function to calculate the spike time tiling coefficient
    33. 

  33. * `phase_analysis` module:
    34. 

  34.     * New function to extract spike-triggered phases of an AnalogSignal
    35. 

  35. * `unitary_event_analysis` module:
    36. 

  36.     * Added new unit test to the UE function to verify the method based on data of a recent [Re]Science publication
    37. 

  37.   
    38. 

  38. Other changes
    39. 

  39. -------------
    40. 

  40. * Minor bug fixes
    41. 

  41.   
    42. 

  42.   
    43. 

  43. Elephant 0.4.3 release notes
    44. 

  44. ============================
    45. 

  45. March 2nd 2018
    46. 

  46. 

  47. Other changes
    48. 

  48. -------------
    49. 

  49. * Bug fixes in `spade` module:
    50. 

  50.     * Fixed an incompatibility with the latest version of an external library
    51. 

  51. 

  52.   
    53. 

  53. Elephant 0.4.2 release notes
    54. 

  54. ============================
    55. 

  55. March 1st 2018
    56. 

  56. 

  57. New functions
    58. 

  58. -------------
    59. 

  59. * `spike_train_generation` module:
    60. 

  60.     * **inhomogeneous_poisson()** function
    61. 

  61. * Modules for Spatio Temporal Pattern Detection (SPADE) `spade_src`:
    62. 

  62.     * Module SPADE: `spade.py`
    63. 

  63. * Module `statistics.py`:
    64. 

  64.     * Added CV2 (coefficient of variation for non-stationary time series)
    65. 

  65. * Module `spike_train_correlation.py`:
    66. 

  66.     * Added normalization in **cross-correlation histogram()** (CCH)
    67. 

  67. 

  68. Other changes
    69. 

  69. -------------
    70. 

  70. * Adapted the `setup.py` to automatically install the spade modules including the compiled `C` files `fim.so`
    71. 

  71. * Included testing environment for MPI in `travis.yml`
    72. 

  72. * Changed function arguments  in `current_source_density.py` to `neo.AnalogSignal` instead list of `neo.AnalogSignal` objects
    73. 

  73. * Fixes to travis and setup configuration files
    74. 

  74. * Fixed bug in ISI function `isi()`, `statistics.py` module
    75. 

  75. * Fixed bug in `dither_spikes()`, `spike_train_surrogates.py`
    76. 

  76. * Minor bug fixes
    77. 

  77.  
    78. 

  78.  
    79. 

  79. Elephant 0.4.1 release notes
    80. 

  80. ============================
    81. 

  81. March 23rd 2017
    82. 

  82. 

  83. Other changes
    84. 

  84. -------------
    85. 

  85. * Fix in `setup.py` to correctly import the current source density module
    86. 

  86. 

  87. 

  88. Elephant 0.4.0 release notes
    89. 

  89. ============================
    90. 

  90. March 22nd 2017
    91. 

  91. 

  92. New functions
    93. 

  93. -------------
    94. 

  94. * `spike_train_generation` module:
    95. 

  95.     * peak detection: **peak_detection()**
    96. 

  96. * Modules for Current Source Density: `current_source_density_src`
    97. 

  97.     * Module Current Source Density: `KCSD.py`
    98. 

  98.     * Module for Inverse Current Source Density: `icsd.py`
    99. 

  99. 

  100. API changes
    101. 

  101. -----------
    102. 

  102. * Interoperability between Neo 0.5.0 and Elephant
    103. 

  103.     * Elephant has adapted its functions to the changes in Neo 0.5.0,
    104. 

  104.       most of the functionality behaves as before
    105. 

  105.     * See Neo documentation for recent changes: http://neo.readthedocs.io/en/latest/whatisnew.html
    106. 

  106. 

  107. Other changes
    108. 

  108. -------------
    109. 

  109. * Fixes to travis and setup configuration files.
    110. 

  110. * Minor bug fixes.
    111. 

  111. * Added module `six` for Python 2.7 backwards compatibility
    112. 

  112. 

  113. 

  114. Elephant 0.3.0 release notes
    115. 

  115. ============================
    116. 

  116. April 12st 2016
    117. 

  117. 

  118. New functions
    119. 

  119. -------------
    120. 

  120. * `spike_train_correlation` module:
    121. 

  121.     * cross correlation histogram: **cross_correlation_histogram()**
    122. 

  122. * `spike_train_generation` module:
    123. 

  123.     * single interaction process (SIP): **single_interaction_process()**
    124. 

  124.     * compound Poisson process (CPP): **compound_poisson_process()**
    125. 

  125. * `signal_processing` module:
    126. 

  126.     * analytic signal: **hilbert()**
    127. 

  127. * `sta` module:
    128. 

  128.     * spike field coherence: **spike_field_coherence()**
    129. 

  129. * Module to represent kernels: `kernels` module
    130. 

  130. * Spike train metrics / dissimilarity / synchrony measures: `spike_train_dissimilarity` module
    131. 

  131. * Unitary Event (UE) analysis: `unitary_event_analysis` module
    132. 

  132. * Analysis of Sequences of Synchronous EvenTs (ASSET): `asset` module
    133. 

  133. 

  134. API changes
    135. 

  135. -----------
    136. 

  136. * Function **instantaneous_rate()** now uses kernels as objects defined in the `kernels` module. The previous implementation of the function using the `make_kernel()` function is deprecated, but still temporarily available as `oldfct_instantaneous_rate()`.
    137. 

  137. 

  138. Other changes
    139. 

  139. -------------
    140. 

  140. * Fixes to travis and readthedocs configuration files.
    141. 

  141. 

  142. 

  143. Elephant 0.2.1 release notes
    144. 

  144. ============================
    145. 

  145. February 18th 2016
    146. 

  146. 

  147. Other changes
    148. 

  148. -------------
    149. 

  149. Minor bug fixes.
    150. 

  150. 

  151. 

  152. Elephant 0.2.0 release notes
    153. 

  153. ============================
    154. 

  154. September 22nd 2015
    155. 

  155. 

  156. New functions
    157. 

  157. -------------
    158. 

  158. * Added covariance function **covariance()** in the `spike_train_correlation` module
    159. 

  159. * Added complexity pdf **complexity_pdf()** in the `statistics` module
    160. 

  160. * Added spike train extraction from analog signals via threshold detection the in `spike_train_generation` module
    161. 

  161. * Added **coherence()** function for analog signals in the `spectral` module
    162. 

  162. * Added **Cumulant Based Inference for higher-order of Correlation (CuBIC)** in the `cubic` module for correlation analysis of parallel recorded spike trains
    163. 

  163. 

  164. API changes
    165. 

  165. -----------
    166. 

  166. * **Optimized kernel bandwidth** in `rate_estimation` function: Calculates the optimized kernel width when the paramter kernel width is specified as `auto`
    167. 

  167. 

  168. Other changes
    169. 

  169. -------------
    170. 

  170. * **Optimized creation of sparse matrices**: The creation speed of the sparse matrix inside the `BinnedSpikeTrain` class is optimized
    171. 

  171. * Added **Izhikevich neuron simulator** in the `make_spike_extraction_test_data` module
    172. 

  172. * Minor improvements to the test and continous integration infrastructure
    173.