Merge remote-tracking branch 'refs/remotes/origin/master'

Readme.md

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+# Collection of Datasets for testing PyVIEW
+
 This repository contains datasets for testing pyview (https://github.com/galizia-lab/pyview).
 
-Each folder contains a dataset. A brief description of the datasets follow.
+For more information please consult: [About pyVIEW](https://github.com/galizia-lab/pyview/wiki), [Getting Started](https://github.com/galizia-lab/pyview/wiki/Getting-Started), [Unit-Testing](https://github.com/galizia-lab/pyview/wiki/Unit-Testing)
+
+**Reference Publication:** Kumaraswamy A., Raiser G., Galizia C. G. (2022). PyView: A general purpose tool for analyzing calcium imaging data. Journal of Open Source Software, ....., \<DOI\>
+
+## Acknowledgements
+We would like to thank Dr. Ana Silberling, Dr. Hanna Schnell, Dr. Inga Petelski, Dr. Latha Mukunda, Marylin Roswell, Dr. Marco Stucchi, Dr. Sercan Sayin, Dr. Alja Luedke and Dr. Elena Ian for allowing us to use examples of data acquired by them here. 
+
+-- please add funding info here --
+
+## Licensing
+"Collection of Datasets for testing PyVIEW" by Galizia Lab, University of Konstanz, Germany and Bente Lab, NTNU, Trondheim, Norway is licensed under Creative Commons Attribution 4.0 International License (https://creativecommons.org/licenses/by/4.0/). 
+
+## Updates
+Updated versions of "Collection of Datasets for testing PyVIEW", if any, will be available here: https://gin.g-node.org/ag_galizia/pyview_test_data. 
+
+## Description of Contents
+Each folder contains a dataset and has the subfolder structure as described [here](https://github.com/galizia-lab/pyview/wiki/Recommended-folder-structure). A brief description of the datasets follows.
 
 | Folder Name              |Experimenter|Lab|Setup| Description                                                                                                                                            | LE_loadExp |LE_CalcMethod|
 |--------------------------|------------|---|-----|--------------------------------------------------------------------------------------------------------------------------------------------------------|------------|---------------|
@@ -10,7 +28,7 @@ Each folder contains a dataset. A brief description of the datasets follow.
 | HS_Till                  |Hanna Schnell|Galizia Lab, University of Konstanz, Germany|Till Photonics| Calcium measurements in the Honeybee Antennal Lobe using GCamp. Short measurements, single wavelength.                                                 | 3          |3|
 | IP_Fura                  |Inga Petelski|Galizia Lab, University of Konstanz, Germany|Till Photonics| Calcium measurements in the Locust Antennal Lobe using Fura. Short measurements, dual wavelength.                                                      | 4          |4|
 | LM_Till_only_FID         |Latha Mukunda|Galizia Lab, University of Konstanz, Germany|Till Photonics| Calcium measurements in the Drosophila Antenna using GCamp. Long measurements, single wavelength.                                                      | 3          |3|
-| MR_Till                  |Marylin Rowswell|Galizia Lab, University of Konstanz, Germany|Till Photonics| Calcium measurements in the Drosophila Antenna using GCamp. Long measurements, single wavelength.                                                      | 3          |3|
+| MR_Till                  |Marylin Roswell|Galizia Lab, University of Konstanz, Germany|Till Photonics| Calcium measurements in the Drosophila Antenna using GCamp. Long measurements, single wavelength.                                                      | 3          |3|
 | MS_LSM                   |Marco Stucchi|Galizia Lab, University of Konstanz, Germany|Zeiss LSM510| Calcium measurements in the Drosophila Mushroom Body using GCamp. Very Long measurements, single wavelength.                                           | 20         |3|
 | SS_LSM                   |Sercan Sayin|Galizia Lab, University of Konstanz, Germany|Zeiss LSM510| Calcium measurements in the Locust Antennal lobe using Oregon green. Short measurements, single wavelength.                                            | 20         |3|
 | SS_LSM_Pixel_Calibration |Sercan Sayin|Galizia Lab, University of Konstanz, Germany|Zeiss LSM510| Calibration measurements using a very small scale. Short measurements, single wavelength.                                                              | 20         |3|

datacite.yml

@@ -0,0 +1,74 @@
+# Metadata for DOI registration according to DataCite Metadata Schema 4.1.
+# For detailed schema description see https://doi.org/10.5438/0014
+
+## Required fields
+
+# The main researchers involved. Include digital identifier (e.g., ORCID)
+# if possible, including the prefix to indicate its type.
+authors:
+  -
+    firstname: "Ajayrama"
+    lastname: "Kumaraswamy"
+    affiliation: "Universität Konstanz, Konstanz, Germany"
+    id: "ORCID:0000-0001-7928-877X"
+  -
+    firstname: "C. Giovanni"
+    lastname: "Galizia"
+    affiliation: "Universität Konstanz, Konstanz, Germany"
+    id: "ORCID:0000-0001-8292-6031"
+
+# A title to describe the published resource.
+title: "Collection of Datasets for testing PyVIEW"
+
+# Additional information about the resource, e.g., a brief abstract.
+description: |
+  These datasets can be used for unit-testing PyVIEW, which is a general purpose for analyzing calcium imaging data. The datasets also serve as examples for illustrating the folder structure recommeded when using PyVIEW.
+
+# Lit of keywords the resource should be associated with.
+# Give as many keywords as possible, to make the resource findable.
+keywords:
+  - Neuroscience
+  - calcium imaging
+
+# License information for this resource. Please provide the license name and/or a link to the license.
+# Please add also a corresponding LICENSE file to the repository.
+license:
+  name: "Creative Commons Attribution 4.0 International (CC BY 4.0) "
+  url: "https://creativecommons.org/licenses/by/4.0/"
+
+
+
+## Optional Fields
+
+# Funding information for this resource.
+# Separate funder name and grant number by comma.
+# funding:
+#   - "DFG, AB1234/5-6"
+#   - "EU, EU.12345"
+
+
+# Related publications. reftype might be: IsSupplementTo, IsDescribedBy, IsReferencedBy.
+# Please provide digital identifier (e.g., DOI) if possible.
+# Add a prefix to the ID, separated by a colon, to indicate the source.
+# Supported sources are: DOI, arXiv, PMID
+# In the citation field, please provide the full reference, including title, authors, journal etc.
+# references:
+#   -
+#    id: "doi:10.xxx/zzzz"
+#    reftype: "IsSupplementTo"
+#    citation: "Citation1"
+#  -
+#    id: "arxiv:mmmm.nnnn"
+#    reftype: "IsSupplementTo"
+#    citation: "Citation2"
+#  -
+#    id: "pmid:nnnnnnnn"
+#    reftype: "IsReferencedBy"
+#    citation: "Citation3"
+
+
+# Resource type. Default is Dataset, other possible values are Software, DataPaper, Image, Text.
+resourcetype: Dataset
+
+# Do not edit or remove the following line
+templateversion: 1.2