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- from .io import read_tif_2Dor3D
- import matplotlib.pyplot as plt
- import logging
- import numpy as np
- def get_foto1_data(flags, p1):
- foto1_filename = flags.get_existing_filename_in_coor(p1.metadata.ex_name, ".morpho.tif")
- if foto1_filename is not None:
- foto1_data, _ = read_tif_2Dor3D(foto1_filename).astype(np.int32)
- else:
- logging.getLogger("VIEW").warning(f"Could not find {foto1_filename}. Using frame averaged data instead")
- foto1_data = p1.foto1
- return foto1_data
- def show_photo(foto1_data):
- if not plt.isinteractive():
- plt.ion()
- fig, ax = plt.subplots()
- ax.imshow(foto1_data.swapaxes(0, 1), cmap="gray", origin="lower")
- fig.canvas.draw()
- plt.show(block=False)
- def calc_foto1(raw1):
- return raw1[:, :, 1:6].mean(axis=2)
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