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@@ -49,7 +49,7 @@ LE_loadExp = 35
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# Mother of all Folders of your dataset
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# On Windows, if you copy paths from the file explorer, make sure the string below is always of the form r"......"
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-STG_MotherOfAllFolders = r""
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+STG_MotherOfAllFolders = r"/Users/galizia/Nextcloud/VTK_2021/Bente_Test_2021"
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# path of the "Data" folder in VIEW organization containing the data
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# On Windows, if you copy paths from the file explorer, make sure the string below is always of the form r"......"
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@@ -80,8 +80,8 @@ default_values['Cycle'] = 0 # how many ms per frame
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default_values['DBB1'] = 'none' # file name of raw data
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default_values['UTC'] = 0 # recording time, extracted from file
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-default_values['PxSzX'] = '4.6' # um per pixel, 1.5625 for 50x air objective, measured by Hanna Schnell July 2017 on Till vision system, with a binning of 8
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-default_values['PxSzY'] = '4.6' # um per pixel, 1.5625 for 50x air objective, measured by Hanna Schnell July 2017 on Till vision system, with a binning of 8
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+default_values['PxSzX'] = '0.0' # um per pixel, 1.5625 for 50x air objective, measured by Hanna Schnell July 2017 on Till vision system, with a binning of 8
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+default_values['PxSzY'] = '0.0' # um per pixel, 1.5625 for 50x air objective, measured by Hanna Schnell July 2017 on Till vision system, with a binning of 8
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default_values['Lambda'] = 0 # wavelength of stimulus. In TILL, from .log file, In Zeiss LSM, from .lsm file
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@@ -135,6 +135,9 @@ def get_odorinfo_from_label(label):
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if len(parts) > 1:
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odor = parts[0]
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concentration = parts[1]
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+ # in the case the name is odor_conc.tif:
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+ if concentration[-4:] == '.tif':
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+ concentration = concentration[:-4]
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else:
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odor = 'odor?'
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concentration = 'conc?'
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