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- # List of inputs and outputs from @animal_warper
- AFNI package : linux_centos_7_64
- AFNI version number : AFNI_21.3.17
- @animal_warper ver : 3.52
- List of main outputs (this file) : animal_outs.txt
- List of intermediate files : intermediate/guide_to_ints.txt
- Rerun notice, see backup info : animal_outs_mvd_2022_01_11_18_08_56.txt
- Input dset (orig) : Yerkes19.nii.gz
- Base dset (templ) : NMT_v2.0_sym_SS.nii.gz
- Base space : NMT2
- Atlas dsets :
- Input dset center_out : native
- Alignment type : all (= nonlinear)
- Matrix, full aff xform (for AP) : Yerkes19_composite_linear_to_template.1D
- Matrix, full aff xform, inv : Yerkes19_composite_linear_to_template_inv.1D
- NL warp, aff2base (for AP) : Yerkes19_shft_WARP.nii.gz
- NL warp, base2aff : Yerkes19_shft_WARPINV.nii.gz
- Input in templ : Yerkes19_warp2std.nii.gz
- Input in templ, no skull : Yerkes19_warp2std_ns.nii.gz
- Input in templ, no skull, unifized : Yerkes19_warp2std_nsu.nii.gz
- Mask of input : Yerkes19_mask.nii.gz
- Input (orig), no skull : Yerkes19_ns.nii.gz
- Input (orig), no skull, unifized : Yerkes19_nsu.nii.gz
- Templ surf in orig : surfaces/NMTv2sym_in_Yerkes19.gii
- QC directory of images : QC/
- Info on atl/seg followers : QC/report_*.1D
- Scripts to view surfaces : surfaces/do*.tcsh
- Command : @animal_warper -ok_to_exist -input yerkes19_abox.nii.gz -input_abbrev Yerkes19 -base NMT_v2.0_sym_SS.nii.gz -base_abbrev NMTv2sym -outdir aw_Yerkes19_to_NMTv2sym
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