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- # List of inputs and outputs from @animal_warper
- AFNI package : linux_rocky_8
- AFNI version number : AFNI_24.2.01
- @animal_warper ver : 3.62
- List of main outputs (this file) : animal_outs.txt
- List of intermediate files : intermediate/guide_to_ints.txt
- Input dset (orig) : NMTv1.3.nii.gz
- Base dset (templ) : macMNI_rescale.nii.gz
- Base space : MACMNI
- Atlas dsets :
- Input dset center_out : native
- Alignment type : all (= nonlinear)
- Matrix, full aff xform (for AP) : NMTv1.3_composite_linear_to_template.1D
- Matrix, full aff xform, inv : NMTv1.3_composite_linear_to_template_inv.1D
- NL warp, aff2base (for AP) : NMTv1.3_shft_WARP.nii.gz
- NL warp, base2aff : NMTv1.3_shft_WARPINV.nii.gz
- Input in templ : NMTv1.3_warp2std.nii.gz
- Input in templ, no skull : NMTv1.3_warp2std_ns.nii.gz
- Input in templ, no skull, unifized : NMTv1.3_warp2std_nsu.nii.gz
- Mask of input : NMTv1.3_mask.nii.gz
- Input (orig), no skull : NMTv1.3_ns.nii.gz
- Input (orig), no skull, unifized : NMTv1.3_nsu.nii.gz
- Templ surf in orig : surfaces/MNImac_in_NMTv1.3.gii
- QC directory of images : QC/
- Info on atl/seg followers : QC/report_*.1D
- Scripts to view surfaces : surfaces/do*.tcsh
- Command : @animal_warper -ok_to_exist -base macMNI_rescale.nii.gz -base_abbrev MNImac -input NMT_1.3_SS.nii.gz -input_abbrev NMTv1.3 -outdir aw_NMTv1.3_to_MNImac
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